RNA id: XM_021620532.2


Basic Information

Item Value
RNA id XM_021620532.2
length 5318
RNA type mRNA
GC content 0.51
exon number 31
gene id LOC110535501
representative False

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 23635899 ~ 23661525 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATAGCGTGTTCTTTCACACGGTGGCGTTATCTCTCATGACTTCGGTCTCTCCCCCTATTGAAGTGAGTGTCATGTAGGAATCTGGGGGCACCGCTTCCTGCTTGAAAAGGACACCCTAAAAAAGGAACGTCAAAATGGTTCGAAGCAGACAGACCAGAGTACTGTTCCTGAATGACATGGAGCGACTAGAGAGGACTCTGTTCCGACTAGAGCAAGGCTTTGAGCTCCAGTTCCGGTTGGGGCCCACTCTGCAGGGGAGGCATGTGCAGGTCCACACTAACTACCCTGCGGAGGGAGAGAAGTTTGACCGGCTTAAGTTCTGGCCTCTGAACTGGATAAACCCAACGGGGAGAGACGATGACTCGGACAAGTACTGCAAACTGGACCTGCAGGTGGCAGGGTCCTACCAGTATTACTTTTGTGCTGGGACTGAAGAGAAGACTGGTAGTGGCTACATAGTGGTGGACCCAGTGCTGCGTGTGGGTGCTGATAACCATGTCCTACCCCTGGACTGTATTGCCATTCAGACATACCTGGCCAAGTGCCTGGGGCCTCTGGACGAATGGCAGGACAGGCTCAGGGTTGCCAAGGAGACCGgtTATAACATGATCCACTTCACCCCGCTGCAGAAGTTAGGGATGTCTCGCTCCTGCTATTCTCTGGCCGACCAACTGGAGCTCAACCCAGAGTTCTCTACTGAAGGGAAGAACTACACCTGGATGGATGTGGGCAACCTGGTGGAGAAACTGAAGAAAGAGTGGAACATGGTCTGCATCACTGACGTGGTCTACAACCATACAGctgCTAACAGTAGGTGGTTATGTCTACACCCTGAGTGTGGCTATAATCTGGTGAACTCGCCTCACCTGAAGCCAGCCTGGGTGCTGGACAGGGCTCTGTGGCACCTCACCTGTGACATCGCAGACGGGAAGTACAGTGGCCATGGTGTTCCTGCTCACATCGAGAATGAACACCAACTCCACATGCTGCGAGGTGTCCTGTGGGATGAGATCTACCCCAGGACCAAGCTGTGGGAGTTCTACCAGGTGAACGTGGAGAAGGCTGTGGAACAGTTCAGGAAGCTGCTTCAGGCAGGAGGCAAAGCAGTGAGATTAGAGAATGAGGATAAGAAGCGTCTGAGGATCCTCCCGGACCCCCATTGTCGACGCTTCGGTAACACCGTGGACATGACCTCAGCCTTGGAGACCTTCATACCCAATGGCAATGAGCCCTCATCCATCCAAGAGTGTTGTAACTGGTTGAGGAACAGACTGGAGGAGTTGAATGTGGAGAGCTATAAGGAGATGCACTACCATGAGGAACAGGCCACCaactgcattgtgggaaatgtagtgtACGAACGCCTTGCAGACCACGGGCCTAAGTTGGGACCTATTACCAGGAACCATCCAGTGGTGTGTGGATATTTCACCTTCCCGTTTGAGGACAACTTGACCTTTGACCAGGAAATGCAGCTGATGAGCCAGACAGACAAAGCGTGTCACTTCCTGGCCCACAACGGCTGGGTGATGTCAGACGACCCCCTGAGGAACTTTGCAGAGCCAGGCTCTAACGTGTACCTGAGGAGGGAGCTGATCTGCTGGGGAGACAGTGTGAAGCTGCGTTACGGTGAGAAACCAGCGGACTGTCCCTACCTGTGGGCCCACATGAAGAAGTATACAGAGATCACAGCCCAACACTTTGCGGGCGTGCGCTTGGACAACTGTCACTCCACTCCTCTACATGTGGCCGAGTACATGTTGGAGAGAGCTCGCGAGCTGAAGCCTGACCTGTATGTGGTGGCTGAGCTGTTCACGGGCAGCGAGGAGCTGGACAATGTCTTTGTCACTAGACTGGCCATTACCTCCCTCATCAGAGaGGCTATGAGTGCAGGGGACAGTCATGAGGAGGGCAGGCTGGTCTACAGGTTTGGTGGAGAGCCTGTGGGCTCTTTCGTCCAGCCCAGCCTCAGACCTCTGGTGCCCTCTATCGCCCATGCCATGTTCCTGGATGTTACTCATGACAACGAGTGCCCTGTCCAGATTCGCTCTGTGTACGACTCCCTCCCGAGCTCTGCTATCGTCTCCATGGCCAGTTGTGCTACAGGCAGTACTAGAGGATATGACGAGCTGGTCCCTCACCAGATCTCTGTTGTGAAGGAGGAGCGCTTCTATCCAAAGTGGAACTCGGAGGCCAAGCCCTCCTCTGCAGGGGAGGTGAACTCCCAGAGTGGTATCATCGCTGGGAAACTGGCACTCAACAAGTTGCACCAGGAACTGGCCTCTAAGGGCTTCTCGCAGgtcTATGTGGACCAGGTGGATGAGGACATAGTGGCAGTAACCAGACATTGTCCCAGCACACACCAGTCTGTGGTAGCTGTGTGTCACACTGCCTTCAGGAACCCCAAGACCTATCAATATAGACAGGAGGTTCCCCCCATGTGCATCCCAGGTAAAATAGAGGAGGTGGTACTGGAGGCCAGGACCGTGGAGAGGATAGCTGGGTCGTACCAGAAAGACCGGAAGAGCATCAACGGTCTCCCTGATCACACATTAGAGATCAGAGAACACATCCAGCTACATGACAGCAAGATTGTGAAACAGGATGATGTCATGTGTAAGGGCCGCAGTGAATTTGTCCAGGAGATTGAATTCGAACACCTCAGCCCTGGTAGTGTGATAGTGTTCAGGGTGAGTCTGGACCCCAGGTCCCAGGAGCTGGTGGGGGTTCTGAGGAGACACCTGGTCCAGTTCAGTGACCATTACAAGACGGGCAGTATGCCTGACAACAACGCCCCAGCCATACTCACTACTCCACTGGCAGCTATTATGTCCAAGGTGACCCTGGCGGACATGAACGTGTTGCTGTTCCGTTGTGACGCTGAAGAGCAGGAGGACGGTGGAGGCTGCTACAACATCCCTTCCTGGATGAGTCTCAAGTACGGAGGCCTGCAAGGTCTGATGTCAGTGATGGGGGACATTCGTCCCAAAAACGACCTGGGACACCCCTTCTGTGACAACCTGAGACGGGGCGATTGGATGATCGACTACGTCAGCAACCGGCTGGTCATCAAGGGAGGAGCACTGGGCGAGGTAGGCAAGTGGTTCCAGGCCATGTTTACCTATCTGAAGCGGATCCCTCGCTACCTGGTGCCATGCTACTTCGACTCCATCATTGTTGGGGCTTATACCACCGCCTTGGATATTGTGTTCAATAAAATGTCAAACTTCATCCAGACCGGTTCCACCCTGGTGAAGCAGTTAGCTCTGGGCTCAGTACAGATGTGTGGAGTGGGCCTGCACCCCGCCCTTCCCCCCCTGGCACCCACCCTGCTTGACGTGCCCTACCGTCTCAATGGCGTTACCAACGAGAAAGAGCAGTGCTGTGTGTCACTGGCTGCAGGTCTTCCTCATTTTGCGACTGGGATGGTCCGTTGCTGGGGCCGGGACACTTTCATGGCACTGCGAGGTCTGATGCTGGTGACAGGAAGACACCTGGAGGCCAGAAACATAATCCTGGCGTTCGCTGGCACCCTGAGGTATGGCCTGATCCCCAACCTGCTGGGACAGGGGACTGGCGCCCGCTATAACTGCCGTGACGCagtatggtggtggctgcagTGCATCCAGGACTACTGCAACATGGTGCCTGACGGAGTCAACATCCTCATGTGCCCTGTGTCAAGGATGTATCCCACCAATGTGTCCCAGCCACAGCCCGCTGGAGCCTGGATCCAGCCCCTGTATGATGTCATTCATGAGGCGATGACGCGTCATATGCAGGGGACGGAGTTCAGGGAGAGGAACGCTGGACCACAGATAGATCGCAACATGACCGATGAAGGGTTTAATGTTGAGGCCAAGGTGAATGAAGATACTGGGTTTGTCTATGGAGGAAATCGCTTCAACTGCGGGACATGGATGGACAAGATGGGAGAGAGTGACAAGGCTCATAACAAAGGAATCCCAGCTACACCTAGGGATGGCTCTGCAGTGGAGATAGTGGGTCTCTGTAAGTCCACAGTGCGCTGGTTAGTGGACCTTCATACGCACGGCTTCTTCCCTTACGCAACCCTCACCATCCTTAGTGATGGTCGTAACATCTCTGTGTCCTATGAAGAGTGGAACAGAAAGATCCAGGAGAACTTTGAGAAGATGTTTTACGTGTCTCACAACCTTCAGGACCCCAATGAGAAACACCCAGACCTGGTGCACAAGAGAGGCATCTACAAGGACAGCTATGGGGCCTCCAGTCCCTGGTGTGACTACCAGCTCAGGCCCAACTTTGCTATCACCATGGTGGTGGCTCCAGAGCTGTTCACAGTGGAAAGGGCCTGGGAGGCACTAGAGATGGCAGAGAAGAAGCTGCTCGGCCCCCTGGGAATGAAGACGTTAGATCCAGATGACATGAAGTACTGTGGTGTCTACGATAATGCTCTGGATAGTGAGAATTTCAATGTTGCTAAGGGCTTCAACTACCATCAAGGACCTGAGTGGCTCTGGCCAGTCGGCTATTTCCTACGAGCCAAACTGTACTTTGCCAAGAAGATGGGGCCAGATATATATGACAAGACTGTGTACCTGGTGAAGAATGTCCTCTCTAGGCATAACATCCACTTCGAGAGATCGTCTTGGAAGGGTCTACCTGAGCTGACTAATGAGAATGGCCAGTACTGTCCCTTCAGCTGTGAGACTCAGGCCTGGTCTATCGCCACCATACTGGAGGTGCTGCATGATCTGTAGATGGAGAATATATTATTTTCTTTTGCAGTTTTCAAAAATGTTTCCTTTATGCAATATTTTCGTGAAGCCCTTTTAACCATTATCACATACCGTAGCTAGAACCATGTGGCTATCTCTACAAAACTGCCTTAAACAACAAACCCCTAAACCTCTTTGTTACATGTTGATATCCATGTCAATGTATGCTTTCATAAATGTGGCTTGCATGTTCATTGTAGTCAATACATATTTAATTGCTTTAAAATCGGTTAGACTATTCAATACATTCAGAAGTACTTTTTTCTTAATTCTGCATTCTCATCGCTGCAGGGATGAATTGTCCCTTCTTCCCATTCTAAATGCTGTctcataatatatatattatatatatatatatatatatatattattattttgtcCTTGTGACTGATGAGACGTTGAACTGTGAATCAGAAATATGAATCAGATCCACCACAAGAATATGCATCACATGCTACACCAccataataaaaaatgtatttaaaaaaaatcacatttgtgTTCCAGTCCAAACTTGTGTGGATAACACCAGTAGAAATAAATCATGAAGTAATCCTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1090760 lncRNA upstream 91171 23544494 ~ 23544728 (+) True G956682
TU1090735 lncRNA upstream 142453 23493072 ~ 23493446 (+) True G956657
TU1090665 lncRNA upstream 219610 23412325 ~ 23416289 (+) True G956597
TU1090608 lncRNA upstream 247998 23385279 ~ 23387901 (+) True LOC110535498
TU1090636 lncRNA upstream 265336 23370317 ~ 23370563 (+) True G956569
TU1090811 lncRNA downstream 16555 23678080 ~ 23681424 (+) True G956732
TU1090818 lncRNA downstream 26750 23688275 ~ 23688480 (+) True G956739
TU1090823 lncRNA downstream 36254 23697779 ~ 23698068 (+) True G956744
TU1090851 lncRNA downstream 65572 23727097 ~ 23727416 (+) True G956771
TU1090852 lncRNA downstream 66805 23728330 ~ 23728626 (+) True G956772
XM_021620534.2 mRNA upstream 30982 23563675 ~ 23604917 (+) False palmdb
XM_021620535.2 mRNA upstream 30982 23595438 ~ 23604917 (+) True palmdb
XM_036935211.1 mRNA upstream 41885 23590839 ~ 23594014 (+) True LOC118936499
XM_021620531.2 mRNA upstream 104545 23494909 ~ 23531354 (+) True LOC110535500
XR_005034600.1 mRNA upstream 158749 23475135 ~ 23477150 (+) True LOC118937334
XM_021620541.2 mRNA downstream 5197 23666722 ~ 23675483 (+) False LOC110535505
XM_021620542.2 mRNA downstream 5197 23666722 ~ 23675483 (+) False LOC110535505
XM_021620543.2 mRNA downstream 5429 23666954 ~ 23675483 (+) True LOC110535505
XM_036935212.1 mRNA downstream 14059 23675584 ~ 23678294 (+) True eif1b
XM_021620549.2 mRNA downstream 61688 23723213 ~ 23747923 (+) False itprid1
TU1089657 other upstream 894652 22726553 ~ 22741247 (+) True tlcd4a
TU1086071 other upstream 3866546 19761265 ~ 19769353 (+) False phldb2b
TU1085033 other upstream 4508814 19126665 ~ 19127085 (+) True G951511
TU1081800 other upstream 7034007 16554200 ~ 16601892 (+) True G948710
TU1081652 other upstream 7090610 16543815 ~ 16545289 (+) False LOC110535387
TU1090807 other downstream 3763 23665288 ~ 23665930 (+) True G956728
TU1090885 other downstream 114247 23775772 ~ 23776845 (+) True G956797
TU1092128 other downstream 938946 24600471 ~ 24601653 (+) True G957942
TU1092512 other downstream 1133075 24794600 ~ 24795736 (+) True G958300
TU1095116 other downstream 3052100 26713625 ~ 26797294 (+) False G960696

Expression Profile