RNA id: XM_021620541.2


Basic Information

Item Value
RNA id XM_021620541.2
length 2141
RNA type mRNA
GC content 0.47
exon number 16
gene id LOC110535505
representative False

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 23666722 ~ 23675483 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aatctaccgcacctgattctaataatgaCCTGGTTGATCagatgaatcaggttagttacaactggggttggagtgaaaacctacagaagGGTAACTTTCCAGGGACAGGGTTGGAGACTCCCtgtgtagtgtgtctgtctgAAAGATGGATCGATACATATTGATCATTGCGTGTGTTCTGCGGGTCGTGCGGTGCTACAGCTCCGGAGAGGTGACTGAGGCGTGTGACGATATGGCACCGCAACACTTCGTAACCGCACAGCAGAGCCCTGCGCCATTCTCTGTCACCGCTGACCGGTCCAGCTTCAAGGAGGGCGATGAAATCACAGTCCGGCTCCTGGCAGATTCCACTCCATTCATTGGGTTCATGTTACAAGCCAGAGCAGTTAATGGAAGCAGTCCTCTGGGAGTCTTCACTGTAACAGGTGGAGAGGCCCAGCTCCTCACCTGCAACGGACAACCTAAGTCTGCAGTTTCTCACACATCAGCATCAGCTAAATTATCCATCCAGGGAACATGGAGGGCCCCCACATCAGATGGCCTTAACTCTATCCAATTCAGTGCATCCTTTGTAATAGATTTCTCCATCTTCTGGGTTGGCGTGACAAGTTATCCAGTCACGTTCAGTGGCACTACTGCAACACCAGCTAACAGCACATCCATACCCATCACCTCGACCACCTCCGCCTCATCTACAGCAGTATTTCCATCCCAATCCTCATTGTCCATCTCGAGTGCTGGATGTGGCAGCAGTAAGGTCTGTTTCAGGCAACCTCTGAACTGTGACCCTGGGGTCAGCCCAGACTGTTACTTCCTATCTGCTATGACCTCTACCAGGGATACAGCCATCCATTTGGAAATGACTGGCCCTTCAGATGGCTACATCGCCATCGGCTTCTCAGATGACCAGATGATGGGAAATGATGATATCTTTATTTGTGGCCGGGACAGTAACGGGTTCATCCAATTGCAACATGCCTATTCAACAGGAAGAAGGCGGCCGGACATAGTTCCTCTGGGAAATGTTTCTGATGTTAAATCCTCAATGCAGGATGATATCATTAGCTGTTCCTTCACGACTAGGAGCCCCATCTCAATTCCGCGATCGGTACGGTCCAGTTCCCCCTACTACCTCATGTTTGCTCACGGACCAACCAGTAATGGGGAAATTGGGCATCATACAAGCACCTTCCTCAGTGACACTAAGATGGATATTTCAAGACCTCGGGGCATCACCAATGCAATCCAGCCTCCTATTATCAAAGCACATGGTGCCCTGATGTTGATAGCATGGATGACCACAGGTAGTCTAGGAATGATCACAGCCAGGTATCTCAAAGGTGTGGCCAATGGGAAGGAATGTTGGCACGATGTTTGGTTTCTGGTACACGTGTTTCTTATGACACtaactgttgctgccaccatcatTGCCTTCATCTTGTCCTTCTCACATGTTAGAGGCTGGAGTGGGGGAGCCCATCCTGTGTTGGGCTGCGTCATGATGATTCTGGCCTTCTTCCAGCCGATCGTTGCCATGTTCCGATGTGGACCTCACCATCGCTGGCGATTCCTCTTTAATTGGTCGCATGCTTTAAATGCAGTGGCGATAAAAGTTTTAGCTGTGGTGGCCATATTCACTGGGTTGTCGTTGATTGACAGCTCTGAGGATAAGTGGCTTCTGAAGGTGATGGGTGGTTTTGTTGGATGGGAGGCAACACTGTACATCCTGCTAGATGTTCACATGCGCTGCAAGTGCAGTGATAACGAAGAGGGTGCTTCTGAATCGGCATGCAAGGCTTTGTTACTACTGGTCCTGTTTTTCCTAGGAAATATGGCCTTTTTGGGAGCACTACTTGTTGGAATTGCCATGTCATGAAGAGCTGCTGAGCAATGGACAGATGCGCTGTCATGATATTTCTATAATATAGCTCACTTTGACTGTATATTTGAAATTTTATAACGTTATGCTCAGAATCATACCGAAAATAGTTGTGATACCTTGTTTACACTGGATGATAAAACGGTATTTTAAATTGACTTCACCCATAATGTTTAAATTGCATGTATATCATTATTAATACTGTAAGTGACTTATAATAAAGTAATTGTTCAAAATGTGTAATAAACAATTGTGCAAACTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1090760 lncRNA upstream 121994 23544494 ~ 23544728 (+) True G956682
TU1090735 lncRNA upstream 173276 23493072 ~ 23493446 (+) True G956657
TU1090665 lncRNA upstream 250433 23412325 ~ 23416289 (+) True G956597
TU1090608 lncRNA upstream 278821 23385279 ~ 23387901 (+) True LOC110535498
TU1090636 lncRNA upstream 296159 23370317 ~ 23370563 (+) True G956569
TU1090811 lncRNA downstream 2597 23678080 ~ 23681424 (+) True G956732
TU1090818 lncRNA downstream 12792 23688275 ~ 23688480 (+) True G956739
TU1090823 lncRNA downstream 22296 23697779 ~ 23698068 (+) True G956744
TU1090851 lncRNA downstream 51614 23727097 ~ 23727416 (+) True G956771
TU1090852 lncRNA downstream 52847 23728330 ~ 23728626 (+) True G956772
XM_021620532.2 mRNA upstream 5197 23635899 ~ 23661525 (+) False LOC110535501
XM_021620533.2 mRNA upstream 5197 23635899 ~ 23661525 (+) True LOC110535501
XM_021620534.2 mRNA upstream 61805 23563675 ~ 23604917 (+) False palmdb
XM_021620535.2 mRNA upstream 61805 23595438 ~ 23604917 (+) True palmdb
XM_036935211.1 mRNA upstream 72708 23590839 ~ 23594014 (+) True LOC118936499
XM_036935212.1 mRNA downstream 101 23675584 ~ 23678294 (+) True eif1b
XM_021620549.2 mRNA downstream 47730 23723213 ~ 23747923 (+) False itprid1
XM_021620548.2 mRNA downstream 47731 23723214 ~ 23747923 (+) False itprid1
XM_036935213.1 mRNA downstream 47732 23723215 ~ 23747923 (+) False itprid1
XM_021620550.2 mRNA downstream 59980 23735463 ~ 23747923 (+) True itprid1
TU1090807 other upstream 792 23665288 ~ 23665930 (+) True G956728
TU1089657 other upstream 925475 22726553 ~ 22741247 (+) True tlcd4a
TU1086071 other upstream 3897369 19761265 ~ 19769353 (+) False phldb2b
TU1085033 other upstream 4539637 19126665 ~ 19127085 (+) True G951511
TU1081800 other upstream 7064830 16554200 ~ 16601892 (+) True G948710
TU1090885 other downstream 100289 23775772 ~ 23776845 (+) True G956797
TU1092128 other downstream 924988 24600471 ~ 24601653 (+) True G957942
TU1092512 other downstream 1119117 24794600 ~ 24795736 (+) True G958300
TU1095116 other downstream 3038142 26713625 ~ 26797294 (+) False G960696
TU1095111 other downstream 3073937 26749420 ~ 26751554 (+) True G960696

Expression Profile