RNA id: XM_021620549.2


Basic Information

Item Value
RNA id XM_021620549.2
length 5693
RNA type mRNA
GC content 0.50
exon number 15
gene id itprid1
representative False

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 23723213 ~ 23747923 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCATGTAAGTCTTTTCATTCAAAGGTGAGTCCTTTCATTCCAATGAACCACGATGTGCAGTTTTGTTCTTCACCGTTTTACTAATCTATGTTGACTGTCACAGTTTGAATGAAATTGAGCTATCATTGTTATAGGTACTATAAACGTTATGAAGACCTAGGGTATATTTAGTATTCTGTTAACCATAGTAGGGACTTAGCCAACACTGTGTCAGCCAATTTATGTGTCTTGGTTGAAGGATGTGAGTCTAGCCTACGTTATGAATGTCAGCGGtgttttggacatttttgcaagtGTTGGATTTCAAATATAATCTCCTCTTAGTAactaaaatgtttaaaaagtgtATTGAAACATGATAATCCACATGGAGTATAAATTACTTTAAGTGGAAGTGACTGGCATTATAAAAGCCCCAAATCCTCCTGGAATATGTCTTGAAATGAGTCTGTTTCATGTATCAAGTATTTGCCAATGCAGTTTACAGTTCACAGTGTCCAGAATACTGACCCAGTTACAGTAAGACAAACCACCATATGGTATTTGAACCATGCAATAAAAaggaaatcattgaaattgtcaTATAAATTGATAACATACATATAATATGATTTTCTTTTTTCTATAGAAGTGACTGAGGCTTTTGACTATCACCTATAGCTTATGCCAGAAAATAGACCATCCAGTTGGACTGATTGACTTCTACTTCCTGCTGGGAATAGAAGGGGGAGGTTGAACTTGAGATAGAGTTCCTGAAAAAGCACATCCCTTTGGCAGGAGCTGCTCGTAACCGATAAACACTGGGACAGGAAACGGTGAAAGCATTTAAATAAGCCAGCAGGAAACAATATTTCTGTGTGTGTCAGAGAAGCAGGGGTGAGCTGTGATGTGTTCGCTGTTGAAGTTTTGACATCATTTGCATCTCTTCCATGACTGGTGTGTTTACTAGTGTAGATAGTGTAGCCTGGATGCCTGGGTGCAACCCAATCCTGTGGTGTTTGCTTGAGCCTCATGTTGCAGTGGATTTTCAGGTTGACTGACGGACGGTGTTGTGTGGTTCTGATCTTAAGAGAGAGACACCAGGATGGCAGCTGAAGGGGCCACAGAGAAGAGAGCCAACTTGGTGGCATCTAAAGTCATGTGGAGTAACAGGGATGACGTACCTATGTCAGCACCAGAACGGTCACATGGCAGTGACAGAGCTGGAATCTGTAGACAGAACAACGTCCAGCAGTGGCTTAGAAGTCATGAGGCGGATGCaaaaccagaccacaccagagaAGCTGCAGCAGGGCTTTTAAAGAGGAACGCCAGCAGTGAGGATGACTTAGCGTTGGGCGTCGAAGCATCTTTATATGGTAAACAGGGAGTGAGGACCGTCCAGGAATTTCTGAGGGGTTCCAGGTCCAGCCCAGTTCTCACCAGGTGGAACAGCTTGACCTCAGCCTTCTCAGCACAGTCGGCTCCACTCAGTGTAATGGATGTGCTGAATCTGTGGAGTGATGACCCAGAGGAGGTCCTACTAGATCTGGGCTTCGGCTGTGACGAGCCTGACATCTCTGGACGGATCCCAGCCCGCTTCATCAACAACCAGTCCAGCGCCCGGGGAATCAACATCCAGGTGTTCCTGGATGCCCAGAAGAACCGCATGGACATAGAGAACCCTGATGTCAGCAataGGTTCAGGCAGTTGGAGGTGCTGCAGCAGGTTACCACTGCGTTCTCATCCCTGGTCGGTGGTGCGTCTACAGACTCCCTCTCCGAGAGCGGAGTTCCAGCTTTAGCTTCAGCCGAGGccagggagaagaggaagaggatgggCATGCTGCTCCGCCGGGTCTCCAGAAAAACCCTCAGCCAGACCCAAATCCAGACCCAGGACTCCCAGGACACAAACCCAACTCCCCACAGTCCCGTAGCCCACTTACAGCAGCCTCTGGCCGGCCCCCCTGACAGGCGGACCCCGCTGAAACGAGCCAGACAGGGCCTGGCTGAGAGTATATGTCTGACCCCACTGGTAGAGGAGCAAGGCCTAGCCTCGGAAGCACCAGAGCCCCACTCGGTCCCCCAGGAGGGTGCGCTCAGGCTCGAGGTGGGGAAGGAGTATCAACCCCTGATCTCCAGTGGTATTCCAACCAGAAAGAAAAGTCCTGGGGAGGCCAGGGAGTCCTTTGAGATGGAGGAGATCCAGAGCTTTGATGAGGGCAGTATTTCTGGGAGCTACATGGGAGCATCTGACACCACAGcagtgtgtgtgatgAGGACTAACAGCTGCCAGTCTGACAGCAGTGGTTTCCTGGAAGAGCCCTTCATCCCGTCCATTACCCAGCATCCCTCACCTGGACCCGAGCTCATGAAGGCTTTGTCGGGAATATCTGGAGGCAGCACTGACAGCCAGATCACTGTAAAAGGAGcttcacccccctcctcccccccatccACTTCCCTGGacccttcccctccttccctctccacgTGCCACCCAAGACCCGAGTCTCCTCTATACAGACCAGAGACAACAAGCCCTACAGAGGAGACACCCAGACACCAGGATTTCCCCAcaccccactccctcctctctgatGCCTTGGAGATGACTAACTCTGCGTTTGGAGCCAGGCCAAGCCTAATGGAAAACACTGTCACTGAGGAAGATGGATTCTCTTCGGCCTGCTGTGCACCTTGTCATAAGCCAGACTCTCCGTTACGGCACGTTATTATTATCATGAAAACAGATAGAGAAACAGAACACTTTACTCTGGAATCAGAGGAAGCTGTTCCAATAGAAGGAGAGGAAAAGGCCATAGCGGAACAAAGTGGTAATGTTCAGACAGGAACAGAGGCTGTTGGTGATCAGGACACCGATTGTTATGGGTCACATGAAGGCTCTCTGATGGACTCGGTGGCTCTGGTGCAGATGAAGGAAGAGATGGAGATGAAGATGGAAGTACAGATTAGTTCTGGTTTGGAAGGTCCAGTGTTGGGTCCTATCGCTGTTCCTGAGGTGGTAGATCAAGGCTCTGAGACTGGATCTGTTTGTCAGGACCGGTCCTCTGAAGATCCTCTATTAGGATCTGACCCTAACCTCTCAGCAGTGCTAagccctgcctcctctctccccgcAGCAgaacctctctctgcctcctctctccccccagcagagcctccctctgcctcctctccccccccagTGCACTGGGAAACGGGTGGCTCAGAGATTTCAGAGGGATCCTCAAGCTTGGTTGTCCAAGAGCCTGTTCCACCACTAAATCAACCAACAAACCCATCAACAGACCTACCTCCAGGCCCAGCTTTAACCTCACCTTCAGAGCAAGTGTCACTTCCATCCCCAGCCTATTCCCCACCACCATCTCCGTCCCCAGCCTCATGTCCACACCAACCTCCAGCCTCAGCTTTTCTGGCAGCATCCAGCTCATCTCCAACACAATCCCATTCCCCAATCCCAAACCATCCTCTATCAGCCCTAACCACAACACCAATCCCATCCTCAATTCCAAACTCACCATCAGCCCATTCCTTAACCGTAGCTCCATCTCAAGCCCCAACCCCACTCGTCCCCCACAGTGGTGCTTTCAGGTCAGGTCGATCTGTGTCTGTCCAGATGCCCTCCTCCCTGCCCTCTGTCTCCCACTCTGCCCTCCGGAGAGGTGCTGTCCCCCACACCCCCTCCCCGCTCGGTCCTTCCTTCGAGCCCCTACCCCTGACTGACCTGACGCTCCGGCAGAGGCGGAACTCCTTCTCCAGGAAGGCGTGGTCAGATGCTGATGTCTCCCACCTTGCAGAACACAGAAACACTGCGGTTGCCATGGGAAAGGCAGACATGACACCTGAGACAATATCCCTCCCGTccccctgcccctccccctccatgTCATCGTCCAATCGGTGGCTGTCTCGCGACGGTTCACGAAGATCCGGAAGTTTCCAGATGAAGTCCACCTCCTTGGACACTGGGCTGTGGCAGGAGGAAGTGGGGGAAGAAGTGGGGGATGAGGATAGACGGTGGGAACGAGCCCTGTTCTCTGGGCTttcctgctgctgctcctgtgATAACCGCTGTCGCTGCTGTTCTCAGAACAATCGCCTCAAACCGTCCTCCGTTTCAGCTTTCCCTTATTCACTGGATGAGCTGGAGGGGATGATGCACTGTATGAGGAAGTTCCGCTGTGTCCTGACAGACATCGAGGAACAGCTGTCAGAAGACCAGGCCTCGGTGTACAGCTCACTCTCTGACACTGACAGAGAGGAAGTGCGAGACATCTTGGAGCTGAGGAAAGCTGTGAAACAGGAAGCAGGAGAGTTGGAACTGCAGCTCACTGACCTGGTTCATCGCTATGACGACAGCTTCAAAATGAAGATGCACAGACTACTCGATGAACAATCTCACCTCTACACCCAGCTAAGGCTCCTGCCCCTGATCCCTACGACCACATCCACCCCTGGTTCTGCCTCCTCCAGGAGCATGGCCACTCAGTGCTGCCTGCTGCCCTGGCTGCCTTTGACGGACATGTCCAGGCCACGCCCCTCATCGCAGGCCACCTGGGATTTGGAGTCCAGATCAGCTCTGCCAGATTCCAGTTCTATGGGCCAGAGGCTAAAACATGGTTCTACAGGCACCAAGCCAGACAAACTGGACATTGTGGGTTTCATCCAGAGAGTAAGGGACCTTTGACCCCTGCTGAAGGAGTCCATACGCCACTCTGTCAATACTGACTCACTGGAGTAAAAGAGAGGTGGGGTAGCCCTGACTGACAGATCTAGGCCAGGATTCAATCCTAAGCGTTTCCTAGGGCAGCGTACAATACAGGCGACAATTTGCCTTTCAAAGGCATTTTCCCTGACGTTCGCAGAGATCGCGTTCATGGTAAACGCTGTGCATGTCGGCTCAGACGTACAGTGCCTTTGAAAAGTCTTATAATAGTGCTCTGCTCTGTAACACGCCTTCGCGTGAATACCAGACCTATACCCTCTAAACTTGACTGAAAAAAACACTGCCTGTGTCCTCACCCACCCGTGGATTGTTTTTCTGTCTTACAGATGCTGCTTCTGCTGTAGCTAACTGAAGATGATCTGCTGTCTAAGTTATAGTGTGTCCAATCAACCTGGACTCGGGTAGatgtaacatgataaatgtaaatctgtctccctccatttagtatgatatgttaggtGTGGTAAGGTATGTATTtctttgtggatgtccatcatccattatGTTTTaacaattcatatgatatgttacgaattgcaatttgtacaatatgtcaCGAAATTGCGATTTAAGTATGATATGTCACAAATTCCAGTTTGATGTGGCTAACCCTAACATTCGTTAAGTAGCTTACGTTAACTAGgcaaagggttagctaacatgctaagtagttgcaaaaagTAGTACGTTTCAAAATAGCTAATTAGCCTAAACGctcaagttgtccgtgatgagatcgGAAGACGCAACATTCCCACCTATCCACCCCGACCCACCACCCTCCCTTCGTTTTTGCCTCATGTAACCTTACCAAACATACCATATCATAttaatttgagtgtcctggatttacgttgactatgtctagtctatgaaACCAGGCTGGTGTAATCAATGGATTCCATTACTACTAAAGTAGTCCAGTGTCCACATGATGAATAAAAAGCATGAATGCATGAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1090823 lncRNA upstream 25145 23697779 ~ 23698068 (+) True G956744
TU1090818 lncRNA upstream 34733 23688275 ~ 23688480 (+) True G956739
TU1090811 lncRNA upstream 41789 23678080 ~ 23681424 (+) True G956732
TU1090760 lncRNA upstream 178485 23544494 ~ 23544728 (+) True G956682
TU1090735 lncRNA upstream 229767 23493072 ~ 23493446 (+) True G956657
TU1090861 lncRNA downstream 2087 23750010 ~ 23750258 (+) True G956781
TU1090863 lncRNA downstream 3939 23751862 ~ 23752291 (+) True G956783
TU1090865 lncRNA downstream 5353 23753276 ~ 23753502 (+) True G956785
TU1090872 lncRNA downstream 13837 23761760 ~ 23762039 (+) True G956792
TU1090883 lncRNA downstream 20115 23768038 ~ 23768562 (+) True G956795
XM_036935212.1 mRNA upstream 44919 23675584 ~ 23678294 (+) True eif1b
XM_021620541.2 mRNA upstream 47730 23666722 ~ 23675483 (+) False LOC110535505
XM_021620542.2 mRNA upstream 47730 23666722 ~ 23675483 (+) False LOC110535505
XM_021620543.2 mRNA upstream 47730 23666954 ~ 23675483 (+) True LOC110535505
XM_021620532.2 mRNA upstream 61688 23635899 ~ 23661525 (+) False LOC110535501
XM_021620553.2 mRNA downstream 15105 23763028 ~ 23765913 (+) False ppp1r17
XM_021620551.2 mRNA downstream 15107 23763030 ~ 23765913 (+) False ppp1r17
XM_021620552.2 mRNA downstream 15208 23763131 ~ 23765913 (+) True ppp1r17
XM_021620558.2 mRNA downstream 229425 23977348 ~ 23996262 (+) True trdmt1
XM_021620557.2 mRNA downstream 248665 23996588 ~ 24049588 (+) True cubn
TU1090807 other upstream 57283 23665288 ~ 23665930 (+) True G956728
TU1089657 other upstream 981966 22726553 ~ 22741247 (+) True tlcd4a
TU1086071 other upstream 3953860 19761265 ~ 19769353 (+) False phldb2b
TU1085033 other upstream 4596128 19126665 ~ 19127085 (+) True G951511
TU1081800 other upstream 7121321 16554200 ~ 16601892 (+) True G948710
TU1090885 other downstream 27849 23775772 ~ 23776845 (+) True G956797
TU1092128 other downstream 852548 24600471 ~ 24601653 (+) True G957942
TU1092512 other downstream 1046677 24794600 ~ 24795736 (+) True G958300
TU1095116 other downstream 2965702 26713625 ~ 26797294 (+) False G960696
TU1095111 other downstream 3001497 26749420 ~ 26751554 (+) True G960696

Expression Profile