RNA id: XM_021620561.2


Basic Information

Item Value
RNA id XM_021620561.2
length 3719
RNA type mRNA
GC content 0.46
exon number 2
gene id c1ql3a
representative False

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 24097090 ~ 24103710 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tgtaAATCATAAGTGCTGTATTGATTGTAGTCTAAAGAAACACATAGAGATGTTGCCACATAGCCCTGAGTAAACGCTAAAGTAAAATAATCCAATGTGTCTAAGCTTGAAACATTTATATCCTCTATAGCAGTGATTAATGCCATCTTTGTCCAAGGCCTGATTGCATCCCTCCAAGCCTCTCCTCCTAGTGATGCCAAGTCTGAGTTTTGGACCGAGCGAGATATCAAGATAACGGAATGGGTGGTGTTACTCTGCACTATATTTCCATCTTTTATAAGACGGTGCACTATCTtgccctccctctctgtttttcttctctctctgtgcagTGCAGAGTACTGCGCATACAACTCTGTAAGCTACGCGCTCTGATCAGAGGCACTCCGCTCTCCACACAGGGCTTAATGACATTACCAGCGGTTTATAGAGTCGTGCTTACACCTGATATGCTGCTATTCTTTAACAAACTCTGGACTGTGTACACAGTGGTAGACTTTTAGACCAGTTGGCTTTGGATATAAGCTGTGGATCGTTGGAAaataaaggagaggaaggagtgcgTTCTCCCACCGAAGTGTTTTTTGTGTGCCTCGCGTCCACACGTGGCTGCTTACAGCAGGGCTTTAAAGTACAGCCGCCACCTCACAGATGCTGAAGACAGTGTTTTTTTAACCACTGACGACTTAAAGCGCGAGCAGCCAGGAAAAGGGCTGAACTTTCCGATTCGGTGAGACTTAGATAAGCAAACATCAGCACAAAAAGTAAAGAgcggaaagaagaaaaaaaaacagacgcGCAGGGGGCTTGGCCCAAAAAAAAGTTCATTACCATTAACTTACCAACAAACCAATATTGGCtgtatatttttttctttttaaaaGCGTACCTCATCAACCACCAAGATTTCACCCAAAAGCAGACAAGAGGATCGCCCTGCGCTGACGAGACTGGTCGGCAGGAAGCGGCTAATAGCGGCTGGAGTGCTTGGAGTCGTCATGGTGTTAGTGCTGGTGATTCTGATCCCAGTTCTGGTTAACTCCGCTGGAACTTCAGCGCACTATGAGATGCTGGGAACCTGCAGGATGGTATGTGATCCATATGGAACCAAGTCACCGACCGCTACGGCAGACACGGTGCGAGCGGACAACAGCCTCATGCAGTCTTTACCAACTTTTATAACAGGTCCGAAAGGGGAACCGGGCCGCCCGGGGAAGGCTGGACCCAGAGGCATCCCAGGTGATCAGGGCCCGCCCGGTCCGATGGGGCCACCCGGGGAGAAGGGGGAACCGGGACGGCCTGGACTACCGGGGCCACCGGGACCCAATGCCGCGGCGGGGGCTATCAGCGCGGCTACGTACAGCACCGTTCCCAAAATCGCGTTTTACGCAGGCCTTAAAAAACAGCACGAGGGCTACGAGGTGCTGAAATTCGACGACGTGGTCACTAATCTGGGGAACCATTACGACCCCACAACCGGGAAGTTTACCTGCTCCATACCTGGGATATACTTCTTCACTTATCACGTCCTGATGCGGGGAGGGGACGGAACCAGCATGTGGGCAGATCTCTGCAAAAACAATCAGGTTCGAGCCAGTGCCATAGCCCAGGACGCTGACCAGAACTATGATTATGCCAGTAACAGTGCCGTGCTGCATCTGGAGCCTGGAGACGAGGTCTACATCAAACTGGACGGGGGCAAGGCCCATGGGGGCAACAACAACAAGTACAGCACCTTCTCTGGATTCATCATCTACGCAGATTAGCTAACAGACCTAGCCTCAAACCTCAGTCAACCTACAGCCTCACCTCTCAGTCAACCGACAGCCTCACCTCTCAGTCATACGGAACACCCTCTCCATGATCTGTCCTATAGTAACTATAGGCCCTAGTTACTAAAGTTACCATAGTGACTAATACTATATTTGAGAGTTGAGGCTATAGGACCTAGCCTCAACTCTCATTCCTCCCTACAACTTCAACCCTCAGTCACCTACTTACAGAGCCCCCTCTCCATCTATATGATCTAGCCTCAACTTTCAACCCTCAGTCATCTAATAATAGCCCTccccataacccccccccccccccccccccccctggctgTAGAGGGTGGGTGTTTCACAACGACAGAGTAATTGAGTTTTGTCCAATCCTGCTACTGGATCCAAAGCTGCCTGCGGGAACTGCCTGTGTGTAAAGAAAATGAAAGAAGAATTGAAGAAGAAGAGTTACGGAAGGAAAATGTCAAAACATAAATTGTAAGTCAAACAGAAGTGCTGGCCTTCATTATTCTACCACCAAAGCAGTAAACTAGTGTACATCTTTGTTTGTGTAGCTATATAAACAAAGCCTAATCGTGTGATGACGAGAGTTTTTATGAACACAGAACCAGATGATTGTTTGCAATAACCCACATAAACAAACCATAATTGTCCTTGCTGTGCGTGACGTGTTAAAACCGAAGGCAATACAATACTTTCTGAGGGTTGCCAAGCAACTCGGATGCTTACATGTTGGAGAAAGGTTGGTTGTGTTGTTGtagggagagggggggatgatGACATCATCTTAAATCTGGTTTCAGTTCATGGTTGGGAATGGACTGTGTATATGGTGAAGTCTCTACTAGCTCTATAAATAGTCATTCCTTTCCCTTATTAATTAAGTAGACTTTAAGGCCTTATAAAAAAATACCTTCAACATcatatttaaagggatagttcctTTATGGCAGAGCTGCTTTCTTATGGTTATAGCAGACACAGCCTTTTTGTTTACAAATGGTACACATGGTTTCTATACATTTTTAGaaaaaaaggtgttatctagaTCCTAAAAGAGTTATTTGactgtcccaataggagaaccctttgaagaaccctttttgattcaaggtagaacccttttgggttccatgtagaacggGTTCTAGTTGGAACAACAAATGGTTCTagttggaaccaaaagggttctcctacggggacagctgacaaacccttttggaacccttttttctaagtgtacagtatgtatacttTTTCTGAAGGTCAAACCTAGACTGTTTAGTGGTTAGGTCCACTTAGAACCACCTTGTTTTACACTAGATGAATCATCGAGTGCTGTGTGGGAGTGGCGCTACCTGACGTGAAACAATGCTTAGCCCCATTAGTTCAACACAACAGTGTGAAGTTACAGTATTGGAATGCTACTGGAGGAAAGCACTATGCAGAACTACGAGTACGGCTACTATGtaaatgtatatgtatgtatcCTAAAGAAAGTTTAACAAGAATGTGGATAGCACCACTGAATTACTGTGTAAATATTGTAGTGATTATGAAATTGTTCTTATTTTTCGCCCCTATAAATGTACAAAACTGTTGAAAGAAAGAGCACGGGTTGGATAACCTACCGCTTCGTATTAGAACCATAGTCTAACTTAATGGGACATGCAGTACCAGTCCTATACTTACTGATACGTGTGTGACTATGTCTGCGTCTGagatggcacactattccctatatagtgcacagctTTTGATCCGAACCCTATGggtccttgtcaaaagtagtgcactatatagagaatagggtgccatttcagaccgAGGCTATTAGATCAGGACACGTTCTTCTATTGTATTCCCTGGACACACTTCACCTTGTGTACTGTTTACTCAAATCATGTTGCCATTAAATGGACAAATCGAATCAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1091477 lncRNA upstream 105982 23990555 ~ 23991124 (+) True G957344
TU1091449 lncRNA upstream 163637 23933013 ~ 23933469 (+) True G957316
TU1091440 lncRNA upstream 177147 23919699 ~ 23919959 (+) True G957307
TU1091434 lncRNA upstream 194274 23902619 ~ 23902832 (+) True G957301
TU1091432 lncRNA upstream 195784 23900958 ~ 23901322 (+) True G957299
TU1091543 lncRNA downstream 37113 24140823 ~ 24141306 (+) True G957406
TU1091544 lncRNA downstream 37735 24141445 ~ 24141684 (+) True G957407
TU1091552 lncRNA downstream 48264 24151974 ~ 24152283 (+) True G957414
TU1091553 lncRNA downstream 49361 24153071 ~ 24153331 (+) True G957415
TU1091556 lncRNA downstream 52032 24155742 ~ 24156009 (+) True G957417
XM_021620559.2 mRNA upstream 2121 24058724 ~ 24094985 (+) False rsu1
XM_021620560.2 mRNA upstream 3643 24059776 ~ 24093463 (+) True rsu1
XM_021620557.2 mRNA upstream 47518 23996588 ~ 24049588 (+) True cubn
XM_021620558.2 mRNA upstream 100844 23977348 ~ 23996262 (+) True trdmt1
XM_021620551.2 mRNA upstream 331193 23763030 ~ 23765913 (+) False ppp1r17
XM_021620562.2 mRNA downstream 42766 24146476 ~ 24149671 (+) True dtx3l1
XM_021620565.2 mRNA downstream 69386 24173096 ~ 24188768 (+) False LOC110535520
XM_021620566.1 mRNA downstream 69595 24173305 ~ 24188768 (+) False LOC110535520
XM_021620564.2 mRNA downstream 70056 24173766 ~ 24188767 (+) True LOC110535520
XM_021620563.2 mRNA downstream 85431 24189141 ~ 24198511 (+) True steap2
TU1090885 other upstream 320261 23775772 ~ 23776845 (+) True G956797
TU1090807 other upstream 431176 23665288 ~ 23665930 (+) True G956728
TU1089657 other upstream 1355859 22726553 ~ 22741247 (+) True tlcd4a
TU1086071 other upstream 4327753 19761265 ~ 19769353 (+) False phldb2b
TU1085033 other upstream 4970021 19126665 ~ 19127085 (+) True G951511
TU1092128 other downstream 496761 24600471 ~ 24601653 (+) True G957942
TU1092512 other downstream 690890 24794600 ~ 24795736 (+) True G958300
TU1095116 other downstream 2609915 26713625 ~ 26797294 (+) False G960696
TU1095111 other downstream 2645710 26749420 ~ 26751554 (+) True G960696
TU1095242 other downstream 2824966 26928676 ~ 26929027 (+) True G960816

Expression Profile