RNA id: XM_036935233.1


Basic Information

Item Value
RNA id XM_036935233.1
length 3155
RNA type mRNA
GC content 0.47
exon number 23
gene id LOC110536590
representative False

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 25834973 ~ 25856195 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTATTAGATATACATGTTTTCATTGTGCACGATACACATTTACATTCTCTGATATTATTATATTAAATTCAAATAATTACTACTCCAATACAGTACACCCTACAGCTGATACAATGGTATTTTCCATAAGGTAGGGTAATGGAGAGCTGTAGCTAAGCGAAAGCGATCAAGCCTGTGACAGTGAAGAAACTTGACTTTTATTAACACATATATTAGTTAGAGCAACATTCTCCGAAAGTGACAAGCTAGCTTGAATGACGAATGGAtagctgcaagctagctagccaggCCTAAAAAAAAGTATTGCGGGATATCTAAGCCTGAAGAAGAAGCCATACGATGTCCTTGAAGCCGCGGGTGGTGGACTTTGATGAAACATGGAACAAGCTACTGACGACAATCAAGGCTGTGGTGATGCTTGATTATGTGGAGAGGGCCACATGGAACGACAGATTCTCTGACATCTATGCCTTGTGTGTTGCTTACCCAGAGCCTCTGGGTGAAAAGTTATACACAGAGACCAAGGTGTTCCTGGAGAACCATGTCAGACAATTGTACAAGAAAGTTCTGGAGTCGGAGGAGAAGGTTTTAGTTATGTACCACAGATACTGGGAGGAGTATAGCAAGGGAGCAGACTACATGGATTGCTTGTACAGGTACCTCAACACACAGTTCATCAAGAAGAACAAACTGACAGAGGCAGACTTGCAGTATGGCTATGGAGGGGTTGACATGAATGAACCACTTATGGAGATAGGAGAGCTAGCACTAGACATGTGGAGGAAACTGATGATCGAGCCCCTGCAAGCTGTCCTGATACGGATGCTGCTGAAAGAAGTCAAAAATGACCGGTGCGGTGAGGACCCTAATCAGAAAGTAATCCATGGGGTTATCAACTCCTTTGTTCATGTTGAACAGTACAAGAAAAAGTTTCCTCTCAAGTTTTATCAGGAAATCTTCGAAGGGCCTTTTCTGACGAAAACAGGAGAGTATTACAAACAGGAAGCCTCCAATTTACTGCAAGAGTCCAACTGCTCACAGTATATGGAAAAGGTTTTAGGACGGTTGAAAGACGAGGAGGTGCGATGTCGAAAGTACCTGCATCCCAGCTCCTACGCCAAAGTCATCCACGAATGCCAGCAGAGGATGGTGGCGGACCACCTGCAGTTCCTCCATGGGGAGTGTCAGAACATCATCCGCCAGGAGAAGAGAGACGGTCAGTCTGGTTACAGGAGCGACGACATGGCTAACATGTACACCCTGCTGCGAGCCGTGTCCAGTGGTTTACCTCACATGATCCAGGAGCTCCAGGTCCATATCCACGACGAGGGCATCCGAGCCACCAGTAACCTCTCTCAGGAAAACATGCCAACCCTGTTTGTGGAGTCCGTGTTGGAGGTTCACAGTAAATTTGTTCAGCTCATTAACACAGTGCTGAATGGGGATCAGCACTTCATGAGCGCACTTGATAAGGCTTTGACGTCAGTGGTTAACCACAGGGAGCCCAAATCCATCTGCAAAGCACCTGAACTGCTCGCCAAGTATTGTGACAATCTGCTGAAGAAGTCTGCAAAGGGAATGACAGAGAACGAGGTGGAAGACAAGCTGACCAGCTTCATTACCGTGTTCAAGTACATAGATGACAAGGACGTTTTTCAAAAGTTTTATGCAAGAATGTTAGCCAAGCGGTTAATACACGGGCTGTCTTTGTCTATGGACTCGGAAGAAGCCATGATCAACAAACTAAAGCAAGCGTGCGGCTACGAGTTCACAAGCAAGCTCCACAGAATGTACACAGACATGAGCGTCAGCGCAGACCTGAACAACAAATTCAACAACTTCATCAAGACCCAGGAATCACCGGTCGAACTGGGCATCAGCTTCCAGATCTACGTATTACAGGCAGGAGCCTGGCCCCTCACACACGTCCCCTCCTCTACCTTTGCCATCCCACAAGAGCTGGAGAAGAGTGTTCAGATGTTTGAGTTGTTCTATAATCAGCACTTCAGCGGGAGGAAGTTGACCTGGCTGCACTATCTctgcacagGTGAGGTGAAGATGAACTATCTCTCCAAGCCCTACGTTGCCATGGTGACCACCTACCAGATGGCGGTGCTGCTGGCGTTCAACAACAGTGAGACGGTAGGCTACAAGGAGCTCCAGGACTCCACCCAGATGAATGAGAAAGAGCTTCAGAAGACCATCAAGTCCCTGCTGGATGTCAAGATGCTCAACCACGACTCCcaaaaggtcaggggtcaggtgTCAGCAGCCACAGATTCACCTGGAGATCTGGAGTCAGCAGGGTCTTCTTTATTGGAGGAAATCGAGGCAGAGTCCACATTTTCACTAAATATGAGTTTCACCAGTAAAAGAACAAAGTTCAAGATCACAACGTCAATGCAGAAAGACACACCACAGGAGATGGAGCAGACGAGGAGTGCAGTGGACGAGGACCGCAAAATGTATTTACAAGCTGCTATCGTGAGAATCATGAAGGCACGCAAAGTGCTCAGACACAATGCCCTCATACAGGAGGTCATCAACCAGTCCAAAGCCAGATTTAACCCCAGTATCAGCATGATCAAGAAGTGCATTGAGGTGCTCATCGACAAGCAGTACATCGAGAGGAGCCAGAGCTCTGCAGACGAGTATAGCTACGTGGCGTAATGGTGTATAAGGCCCCTACCCCAACCAACTGCTGGCTAAGCAAAGAACGACAGAGGCCATTCTTCATTTATTTTTGGGCTGTCGCTGTCTCGCATGCTCCTatacggagggagggatgaagcAGGTCTGTGGGCCTCCATCTTGGAAACAAACAAAACTGTTCAACCCAGACAGCCACCGAGTCATGACACCCTCTGGCCCCCATCCCCCCCCTCATCTGATTTTATGCTGTTTACAACATCACCAGTGCCACGCACCCATTGCGTCAATGGAAAATGCCTGTAGGTATCTGAGCGCAAAGCTGATAATACATTTTTGGTCGACTTAGCCGAAAACAAAAAAAGAATGGGGGGAAAAAAGCGAGTGAGCTGTGACATTGACAAAAAATGTTAGAGACTAGACGCGGAAAACCATGCTTTCTTTTCTCACGTTTGcagttgtttttaaatgtatCGAAGTTTAAAAGAAATATTGTAATAAAACCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1093778 lncRNA upstream 65134 25769055 ~ 25769839 (+) True G959510
TU1093727 lncRNA upstream 145270 25689336 ~ 25689703 (+) True G959464
TU1093726 lncRNA upstream 145985 25688764 ~ 25688988 (+) True G959463
TU1093717 lncRNA upstream 150701 25684049 ~ 25684272 (+) True G959454
TU1093664 lncRNA upstream 189191 25645549 ~ 25645782 (+) True G959401
TU1093926 lncRNA downstream 202078 26058153 ~ 26072686 (+) True G959637
TU1093952 lncRNA downstream 240975 26097050 ~ 26154913 (+) True G959659
TU1093803 lncRNA downstream 544500 26400575 ~ 26401631 (+) True LOC110535542
TU1094172 lncRNA downstream 584867 26440942 ~ 26441293 (+) True G959852
TU1094869 lncRNA downstream 658921 26514996 ~ 26515221 (+) True G960486
XM_021620593.2 mRNA upstream 104167 25728061 ~ 25730806 (+) True fzd8a
XM_021620588.2 mRNA upstream 612308 25194453 ~ 25222665 (+) False pfkpa
XM_036935238.1 mRNA downstream 2770 25858845 ~ 26400935 (+) False LOC110535542
XM_036935240.1 mRNA downstream 2770 25858845 ~ 26400935 (+) False LOC110535542
XM_036935237.1 mRNA downstream 60757 25916832 ~ 26400935 (+) False LOC110535542
XM_036935239.1 mRNA downstream 60758 25916833 ~ 26400935 (+) False LOC110535542
XM_036935242.1 mRNA downstream 762073 26618148 ~ 26700276 (+) False LOC110536591
TU1092512 other upstream 1039237 24794600 ~ 24795736 (+) True G958300
TU1092128 other upstream 1233320 24600471 ~ 24601653 (+) True G957942
TU1090885 other upstream 2058128 23775772 ~ 23776845 (+) True G956797
TU1090807 other upstream 2169043 23665288 ~ 23665930 (+) True G956728
TU1089657 other upstream 3093726 22726553 ~ 22741247 (+) True tlcd4a
TU1095116 other downstream 857550 26713625 ~ 26797294 (+) False G960696
TU1095111 other downstream 893345 26749420 ~ 26751554 (+) True G960696
TU1095242 other downstream 1072601 26928676 ~ 26929027 (+) True G960816
TU1095841 other downstream 1552927 27409002 ~ 27412903 (+) False bambia
TU1095839 other downstream 1553032 27409107 ~ 27412903 (+) True bambia

Expression Profile