RNA id: XM_036935240.1


Basic Information

Item Value
RNA id XM_036935240.1
length 7155
RNA type mRNA
GC content 0.52
exon number 23
gene id LOC110535542
representative False

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 25858845 ~ 26401631 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tgtgcccaacatttttgagaaataagctttttgtgagtatggaacatttttggaaccttttacttcagctcatgaagcatgggaccaacactttacatgttgcgtttagatttttgttcagaataCATGACGTGTCCATAGTAAAATGCCCAGCGGTGACACACGGCTCCAACTACTACTAACTATCACATGGAATTCTGAAAGAGACTTGGGAAGTTTCGGTTCATGGTGAGTCACCACAGTACTCGTGGTCACCAGCGCGGGGAGAGAGACTCCAGTCACGCCACCCTCCCAGCACTGTGCTGTGTATGATTGCCGCGATGCAGGCAGGCTATTCGTCCAAGGAATAGGATCGTAGTTGGAACACTTTAGAGAACAGGTGGTCGGTAAAACGTTAACGTTTAGACGGTATGAAGAGACGATGAAGATTATTGCGGTCTGCTTGTTTGGAATACAGTCTTTTTGACACCAAAGGAAATTCATAATTGGAACATCCTACAAAGTAGTGAGGAATACACCTCAACGGAAGTACATCGGGATTCGGGAACTAATATGAAAGTGACAGTGTGTTTTGGGAGAACCAGGGTGGTGGTTCCTTGTGGCAATGGAACTATTAAAGTCCGCAGTCTTATCGAGCAAGCCGCCATGAGATATAAAAAGGCTATTGCGAAGgaTCCTGACTACTGGCTACAGGTGCACAGGTTGGAGCATGGGGACGGAGGCATACTGGATCTGGACGACACACTGTGCGATGTGGCCGATGACAAAGACAGGctggtGGCAGTGTATGAGGAGCAGGACCCTCACCATGGAGGTGATGGCACCAGTGCCAGCTCAACGGgcacacagagccctgacccctTCACTGCCGTCGCAGAGCTCAACTCCAGCAACATGTCCGCCTTCCAGCCCTACCAGACCAGCAGCGAGATAGAGGTTACCCCCTCCGCCCTGCGCAGCAacATGCCTCTCCATGTTCGGCGCAGTAGCGACCCCTCTCTGGCGGGCCTTCCCCTGGGTGACCCACATACAGCACCGGAGGAACCATCCCGTAAGAACCCCACACGATGGTCCACCACGGCAGGCTTCCGCaagcacaaccaccaccacagccacagccacagccaaaACACTGGGACCAACAGCCTGGAACGCAAGGATGTAGATGCGTACCGGAGTCTCCCACGTGAttcagcagtttgggccacccaGTTCCAGAGAGAGACTGCCCGCTCCTCACTCAGCGCCAACCACCCCATGGTGGACCGCTGGCTGGACAGACAGGATCAGgaggaggaggaggaagaggagagggtgaagcaggaagagaggaatgggagaatagAGCCGGTGGGGAGAGCCGACTCCTGTGTGGAACACTCCCCAACGTTATCTCTGAATGACATGCTAAAGCTGGTAGAGGTGTCCAATGTCGGCGGGCCTCTGGGGATCCACGTTGTGCCTTTCAGTGCCACGGACAGAAGGACCCTTGGGTTGTTAGTGAAGCGTCTGGAGCGCGGCGGCAAGGCGGAGCAGGAAGGTCTGTTCCAGGAGAACGACTGTGTCGTCAAGATTAATAACGGGGATCTGAGGAACATCCGATTTGAAcaagCCCAGAACATGTTCAGGCAGGCCATGCGTTCTCCTGTCATTCTGTTCCATGTGGTCCCAGCCTCCATGAAGAGCCAGTATGAGCAGCTCTCCCAGGAGGAGCTTAGCCCCCCATGTCCGAGGGGGGAGAGGGGTAACCGGGGAAGCTTCACCTCCAGCCAGGCCTCGGACCCCCAGGCCCCGCAGCCCGGGGAAAGGGGTAGTCTGGTGGTCCACGGGGGGGTGGGGTTGGACCACAACCCACAGAGGATGTCCTCCAGATCAAGACCACACCCCATTCCCATCCCCAACATCAAACACCAGAACCATGGTCCTCTACCACAGCGTGTACCAGACCAGCGCTTCTCCACCTCGCTACCTCACAGCGGAAGCAACAACGTCTCCTCggccccctctccatccctgcaGAGGAAAGTTAGTGCCAACCCTACTGCAGGCTACTTAAAGAAAACCGGCCGGAGACTGAACATCCAGCTGAAGAAAGGTCCTGAGGGTCTTGGATTCAGCATCACATCACGTGACGTCCCCATAGGAGGCTCCGCCCCCATCTATGTCAAGAACATCCTGGCTCGGGGTGCTGCTATCCAAGATGGCCGCCTGAAGGCTGGCGACCAGCTGCAAGAGgtgaatGGGGTAGACCTGAATGGGAGGAGTCAGGAGGAGGTGGTAGCTCTACTCAGGATCACCCCCATGGGAGGAACAGTCAGTCTGCTAGTCCTACGCCAAGAGGACTCCTATCTACCTAGAGAAGTGAAGTCAGAAGAAGAGGACCTGGTGTTGACCCCAGATGGTACCAGGGAGTTCCTGACCTTTGAGATCCCTCTGAGTGACTCGGGGTCGGCAGGTCTGGGGGTCAGCGTCAAGGGAAACCGCTCCAAGGAGAACCACGCCGACCTGGGCATCTTTGTCAAGTCCATCATCAACGGAGGGGCCGCCTGCAAGGATGGCCGACTGAGAGTCAACGACCAGCTGATTGCCGTCAATGGCGAGTCGTTGCTAGGGACACCCAACCAGGATGCCATGGAAATGCTTCGCCTGTCCATGTCGACGGAGGGCAACAAACGAGGGATGATCCAACTCATCGTTGCCAGGAGGGTTGCCAAGAGCAACGAGGAGGTTCCAGGAAGCTTGCGGGTGGAGGAGCAGCCTCTGACAGACCCTCTGGACGACCATGAGCGCCACATCTCCCACTCCATGTTCGGGACCAGAGAGTCCATGGACGACCAGCCCTCCATGCCGCCACGCAATGTCATGATGGGACCGCGCATGATGGGTAACTACCAGCTGTCTCCGACTGTGAACATGCCCCAGGACGACACCGTCATGATCGAAGATGATAGGCCACCTGTGATCCCCGCCCACATGTCTGACCAATCATCCTCCAGCTCCCACGATGACATGGGCTTTGCTGCAGATAACCCAGTGACTTGGGCTCAGGACGTGCCAAGCCAAAATGAgtgcTCCCTCAGTCCGGACACAGAAGACCCAGAAGATTCCTTTCAGAGGGAGGGGTTTGGACGCCAGAGCATGTCAGAGAAACGCACCAAACAGTTTGGCGACAATGCCAATCAGCTTGAGATCATCAAGACGCGCAAGTCCAAGAGCATGGACCTAGGCTCTTCGACAGGAGAAACAATTGGTCCCTCTCTGGGCCTGAAGAAGTCCAGCTCCCTGGAGAGCCTCCAGACTGCCGTTGCTGAGGTTACACTCAACGGGGAAATTAACCTCCACAGGCCACGCCCACGAATCATCAGGGGGCGGGGCTGCAACGAGAGCTTCCGGGCAGCCATTGACAAATCGTACGACAAGCCAGGAGTAATCGTTACTGCTATGGAAGAGTGTGACCTGAAGGGAATGGAGACATTGGAGGAGGACACCGAGGGGAGTTCTCGGTCAGGCCGGGACTCCATATCTACGGCCACTGACCTGACCCTGCCACCCGGCAATTCTGTAACCATGGAGAGACAGGTGAATGGCAACGACGATAAAAAGAGGGTGAAGAGCGTGAGGGACAAGAAGAAGcctgagagagataaagagaaggagaaagaaaaagagagagaaaaaaacaaagcCAAGAAAGGGTTGCTGCTGAAGGGCCTGGGAGATATGTTCAGGTTTGGGAAGCACCGCAATGGAGACAAGATGGAGCGTAAGGGGTCGAGTAAATCTAAGATGGAGGACACACAGGCGTCTGAGGAGGAGATGCTACGGATGAAACTGGAGCAGGagagGATCCAGGCGAAGACGAGGGAGTTCCGTGAACGTCAAGCGTCGGTGGCAAGGGAGAGGGAGTACGCTGAGATCCTGGACATCAACCCCAACCTGAACTGCACCTTCAGCTCCAATGAGGACGAGGAACACCCCTACGCAGGCATCGGCTCCCTGGACGGGTCATCCGAAGACAGCAGACAGGAGCCCCACCAAGGGCCCCAGCCCCCCCAGGACAGCGGTCCAGACCAGCCTGACCTGGAAGCCCTCTATGCTCAGGTCAACAAGCCTCGCAACGGACACCCTCCCTCAGCTGACAGCAACCGACTGGCGCCAAGTAACCATGACCGGATACGGCGTCTGAGGGTTGAGTTCCAGCaggccagaggagaggaggaccctGATGACCGACGGCGCACATACAGCTTCGAGCAGCCCTGGGCTAACTCGGAGACCTATACCCTGACCGGACACCAATCTGTGTCTGTGGAGTCACAGGTGCAGAGACCGAGACAAGACAAGAGACGAGACTCATTTACACAGGCCCAAAGACAGTACAGTTCCCTGCCACGGCAACCTCGTAAGACCCCCAGCACAGTGTCCCAGGAGTCGTGTGACAAAGCGTTCCCGCCGGGCGAGGTCTTCCAGACGGCCAAGGAGAACCCCCGCTACTCCAGCTACCAGGGCTCCAGGAATGGCTACCTGCACAGCGGGGCCAGTGGCTTCAACGCCCGCGTCCTGCTGGAGACCCAGGAGCTGCTGAGGCAGGAGCAGAGACGCAGGGAGCAATCTGAGGCCAAGATGAGGCTACCGCCACCACAGGAGGGGGTCCCTGTCACCAACACCGGCTACGATGACATTCACCCAGCCCCGACTCCAACTCTTCCCCAGGATCCAGTCCTGACCCAGGCCCCGATCCTTGTCACAGCCACACCCAAGGGCCCGTACCGCCAGGATGtgcccccctctccatctcagcTGGCCAGGCTCAACAGGCTGCAGGGCTCAGAGAAAGGACATCCATTTTACTCCTGATGGGCAAAGGAGGGATAAGAGGaactggaggatggaggaggggttgATGATTATCACCAGCAATAATATAAGAGAGTCTGGATCTTTTTAAAGTCCGCTAGATCTCTTTGAATGGTTTCAACACAGAGGTTTAAttaattgtatttctatgttggtgtttttatAACAAACTTTACAGTCAGGATTCCTTTCACCCCAATCACCAGTTGTCTGGTCTGTGTCTGCCATCGTGATCTTCCCACTTTAAGTGCCTTGTGGGAAGACTGTTCTGCCTTAAAGGTcgaatgcagccgtttttatctcaatatcaaatcatttatgGGTAACAATAAAGTAcgttactgtgattgttttaaattaaaatggtcaaaaagaaactaAAATAACTTCTTAGTAAAGAGCAATTTCTTAAACAAGAATTTTGATAGGGAGTGGTCTAAGAAGGGTGAGGAAAacagaaaactagctgttatgTCGATGTcatcaggcaggccaaaactccactCCACCAAAGCAGGCtcaaatttcaggcggtcttttcaaacagcacttacactaaaagggcattatcataattttcacaatttcacagcatTATTTCAAAATAGTGAGGTTGTATGCTCTACCAAATCACGTATTTGGCTGTACTGGGCCTTTAAGAGTCTAGTCCTCACCCTTCCTGTGGCTTGTGTATTTGGACACCTTCATCATCCTGCATTGTATCTACAAAACATTCTGTCAATCAACACCCCACAGTATTTTCACCCACACATCATGAGCAACTTCTGACACAAGTGTATACTCCCAAGTGTTTGTGTAGGACCTAGATTGTGTTTGGGTGTGTTTCTGTAGGGTTCTATATGCTGTTGTGCTGACATAAAGAGCTACTGGGTTAACCAGCACGTCCGAATTCTGGGGTAAGACAACCCTACAGTTCCCAGTTACACTACAGAGGAAAATTCCCCCTGGTCTATGACACCCTTCTTATTTAAACTCAGCctcgcatgctctctctctctctctctctctctctcactctctctctcacgctctctctcacacactctctttctctctctctctcactctctctctcactctctctcacgctctctctctcacacactctctttctctctctctctctctctctctcactctcactctctctctctctcacattttaTCCTCTACCCTTGttttttcttctcctttctctTGTAGTTCTCCTCCTCAACCAGAGGTTAACCTTTTAGATCTCATTTCACTgtggggtttcaggctgggtttctgtttgcGCACTttttgacatctgctgatgtaaaaagggctttataaatacatttgttttgacTTGATATAAAACTCCTTTCATCTGGGCGATTCATCAGTATAAACGAggtcagggttgggttattaATTAAtgtagctcatgaaacatgtatCTGTGTTGTGTCTGGGCGGCGCTAGTGAGGGGGGGGTGGATGGGTTAGAGGTAGAGTGGgatggttagggtgtgtgtgtgtgccatggtGTTTCTGCCTGACTGTTTGGCCGTTGACTTGGCTGAGTCACTGTAATTAAAGCCAGTCTGTAACCAGTCTGTCCTGACCCGTCCGACGGACTGCTGCTCCACATTTTTCATTAAGGTGGTTACCGGGAAACCACCTACTGTTCACTTCAACGTTCCTAAACAGCGTCACATACAGCCTCACAGCATGACTGTCTGTCTTTCCCAAGGCCCAGCTAAAACAACAATCTctgtttcatttcatttcattctATTACCATTCATAAGTAATCAATACTGTCGTAATTCATGTTTCAACCACCGTTGCCATATTCTTTTCTCAACTGTGTGTGGgtgcgaatgtgtgtgtgtgtgggtgtgtgggtgggtgggtgggtgggtgggtgcctGTAATGTGATGCCTCCCATGTCTTTGAATATACCTTGGCAGATGTTGAAACAATGGGTGTCAATGAAACGGCAATAGGAGAGGAGTGAAGCGAATAAGACAAGTGGGAGGTGGGAATGAGGCAGTCTGTAAGGGTAGATTGACCCGACTAGTGATGTATTCTATTGCTTCCTCAGAAGTATTCCACTGAGCCGCTGGAACAGACCAGGGCTGGAGAAAAGGCACATTTGACATTTCCATACTTCCATATTCACGCTCTCTCTTTCACAATTTGTTATCGctttctctcttgctttctctctctttctctcttcgcccctctctctctctctctttctctcttcgcccctctctctctctctctttctctttgcccctc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1093778 lncRNA upstream 89006 25769055 ~ 25769839 (+) True G959510
TU1093727 lncRNA upstream 169142 25689336 ~ 25689703 (+) True G959464
TU1093726 lncRNA upstream 169857 25688764 ~ 25688988 (+) True G959463
TU1093717 lncRNA upstream 174573 25684049 ~ 25684272 (+) True G959454
TU1093664 lncRNA upstream 213063 25645549 ~ 25645782 (+) True G959401
TU1094172 lncRNA downstream 40007 26440942 ~ 26441293 (+) True G959852
TU1094869 lncRNA downstream 114061 26514996 ~ 26515221 (+) True G960486
TU1095028 lncRNA downstream 256790 26657725 ~ 26690205 (+) True G960633
TU1095093 lncRNA downstream 300017 26700952 ~ 26701181 (+) True G960689
TU1095094 lncRNA downstream 301115 26702050 ~ 26702275 (+) True G960690
XM_036935234.1 mRNA upstream 2650 25834975 ~ 25856195 (+) True LOC110536590
XM_036935233.1 mRNA upstream 2770 25834973 ~ 25856075 (+) False LOC110536590
XM_036935235.1 mRNA upstream 2770 25834974 ~ 25856075 (+) False LOC110536590
XM_021620593.2 mRNA upstream 128039 25728061 ~ 25730806 (+) True fzd8a
XM_021620586.2 mRNA upstream 636180 25194454 ~ 25222665 (+) True pfkpa
XM_036935242.1 mRNA downstream 217213 26618148 ~ 26700276 (+) False LOC110536591
XM_036935241.1 mRNA downstream 218646 26619581 ~ 26700276 (+) False LOC110536591
XM_036935244.1 mRNA downstream 218648 26619583 ~ 26700276 (+) False LOC110536591
XM_036935243.1 mRNA downstream 218668 26619603 ~ 26700276 (+) True LOC110536591
XM_036935246.1 mRNA downstream 312660 26713595 ~ 26751558 (+) True LOC118936350
TU1092512 other upstream 1063109 24794600 ~ 24795736 (+) True G958300
TU1092128 other upstream 1257192 24600471 ~ 24601653 (+) True G957942
TU1090885 other upstream 2082000 23775772 ~ 23776845 (+) True G956797
TU1090807 other upstream 2192915 23665288 ~ 23665930 (+) True G956728
TU1089657 other upstream 3117598 22726553 ~ 22741247 (+) True tlcd4a
TU1095116 other downstream 312690 26713625 ~ 26797294 (+) False G960696
TU1095111 other downstream 348485 26749420 ~ 26751554 (+) True G960696
TU1095242 other downstream 527741 26928676 ~ 26929027 (+) True G960816
TU1095841 other downstream 1008067 27409002 ~ 27412903 (+) False bambia
TU1095839 other downstream 1008172 27409107 ~ 27412903 (+) True bambia

Expression Profile