RNA id: TU1095837


Basic Information

Item Value
RNA id TU1095837
length 2920
lncRNA type sense_over
GC content 0.43
exon number 3
gene id waca
representative True

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 27357766 ~ 27401629 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

accaccacctccacaccctccagctcctccacccgGCCAGCCTCCTGCTCCTTCACCCCAACCCTAGCGTCACACTTCAACGAGAATCTCATCAAGCATGTCCAGGGCTGGCCCGCCGACCACGCAGAGAAACAGGCGTCCAGGCTACGTGATGAGGCCCACACCATGGGAAGCATCAACATGTCTGAAAATTGCACCGAGCTCAAAAATCTGAGATCCTTAGTTCGAGTCAGTGAAATTCAAGCGACATTGCGCGAGCAGAGGATATTATTTTTGAGACAACAAATTAAAGAACTTGAAAAGTTGAAGAATCAGAATTCCTTCATGGTCTGAGGACTTGACttgaagagaggaaaggggggagagaccCATTGCACATGGTTGGAAGAGAGCTCTTGGTTGGGAGAACCATTGTGTTCTTGTTCTGTGCCCAGTCTTAACACTTTTGAGCTGCAGTTGGATTGGCTTTGGACCACTGGACTGGGCTTTGAGAGGGCTTGGTTAGGTGGAGAGAGTGAGTGGTTGATGGTTGTTGTGGAGGAGAAGAGCGGAGAgaagggttagacatggcttgcatcccaaatggcacccttttcaaTTTATACTGCGCTACTTTTGAACGGGGCCAACAGGACGCAATCATGGTTGGTTTTTGTGCCCTGGAGATGTAGATTTCTTGTAGATGTCATCCATGTTGTAAATATGTTTTGTAGATGACTGAAGCCATGGAAAGCCATGTTTATCAAAGCTTTTGACATCCAAACGAGTCAACGTTATGCCCGAGGAATCAACAGCTTCAGTTCATAGCCTTCTTCATGTTAAACGCATCAGTTgggatatgtcccaaatggcaccctattccttatatagtgcacactattccctatatagtacactacttttgaccggaaccctatgggccatggtcgatagtagtgcactaaatagggaatagggtgccatttgggacaaaggcaCTCAGTCTGCAGACTTCAAGCTTTTTTGTTAATAGATCAGTGAACCATTGCCTTGAGCATGTCTGTGACCTATGACCTGCATGGAACTGGAAGTTAGCGTTATAATAACtgaaacataaaaaaataccGTAACGCAAACAAAACAAACTCACGTTTTAATTTTCTAGTTTTCTCTGCTCttgcataataataataataatgctctATGGATGAAACCCAGTCATATTTGACGAATGTATTACCCTCTGGTGGAAGTATTAaggttacacaaacacacacgatgtctctcaaatggcacccttttccctttatatGCCAGTACTTTTggcaaatgtagtgcactatatagggaatagggtgatgtTTGGGAGACAGGTACCCATCTCCACCATCCTCCTAAAAAGGTTAATCATGCCTGGTTGCAATGGTTCAGAGATCTGTTTGTTCACAGCTCACAGTAGCCAAACCAGTGCCTGATggtgtgatgggggggggggggaattatgAAAGAGCACAGCAATGTTGTGATGTTTTTTACATCCAGGTTAATTCCCGATGCTAGTCCCTCCCTAAACCCTGCCCCTGGCCACACCCATTACGTGCCGAAGCCCAACCCCCCTGGTCTAGCTCTTCTGAGGAGCCGCGGAGCAGTTGTCTTTCTAAAACCCTCCTGTTGGTTTTTTCTTTCTCAAACTTTCCAGCtaagttatttttgtattttttgggggggagaacTGTACTTTTATTAAATGTGAGGTGGCACCATCTCGGTTCAACTAAGAGTTCATTCCTATGTACATTTGATAAGGTAATAATGGAGTTTAAGAAGAGGTTTTAACAAGTTTAAAAAGTTGCAGTGATTACTAGTATATCAGAATGTTATAAATTATTACTACACATTTTCCTTTGCACCCTGTTGTGAATGAGTGCGAATGAGAGCTATTAAAGAAGTGGTTTGGGGGGGCACTACCGAGGCAAGGTGTggggtgtgtctgaaatggcaccggATTCCATTTTGTactgcactacctttgaccagggcccataagcaAGACTAAAATGGAGAAGACAGCGATGTCATCATTTTCAAGATTCTTCAGCAGGTCCACTGGGAGCCAAATGGAGCGCCCGGTGAACTTACCTGAATGACGCAGTTGGAGCGCTTAGCATGTTCTTTGTTATGACATTGTCTCAGTCTTCTCTTTTAGTCTTCCTGCCCATAGGGACTGGTCAaaatgtagtgtactatataggaaatagggtaccattaGGGACGTAGGCATGGAGATTATGATCGCTGCCCCCACACACCATGGTCAGAGGTCGGGCAGGGCAATTACAGCCAGGTCAAATGTGAAATGTACGTATTGTAATAAACATGCTAAACTCAAGCGAGCACTGGTTATTTTATTGGAGTTTTCTGTTAGGTTTTACATttgtattattactattataacgCTAGTGCCTTGTTGAAAGTCTTAAGTCACACAGCCTCTGACATGGAAATAAATGTACCAAGTTTGTTTTCGGTTTGATCAGTAACAAAGATATTCAATAAGCATGCCATGCATCAATCTACATAGGGTTGTTTTGGCACTCCAACCCAGAATTGCATCTTTGTATATGTTGTGTTTGTTCCCCTGTTCACTCTGAGTCAGAGCGGGAACAGTGTTtctatcccaaatagcaccctattccctatgtagtgcactacttttgactgggttccataggactcttgtcaaaagtagtgcactatatagggtatctggtgccatttgggaaccaTATGTGTCCTCAGCTGTGACATGTTTTTCTCCACTGTTCTATTATTCTAGTGAGTCTGTGATTTGAGCTGCACCAACACATTCAGTAAATATGACCACATTGCTTTGTATATTGTTTTCCTCTGAGTATattgaataaaataaataaaatatgcc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1095836 lncRNA upstream 40627 27357510 ~ 27357720 (+) True G961345
TU1095358 lncRNA upstream 214307 27179188 ~ 27184040 (+) True G960911
TU1095360 lncRNA upstream 214452 27183240 ~ 27183895 (+) True G960912
TU1095356 lncRNA upstream 217525 27177389 ~ 27180822 (+) False G960910
TU1095357 lncRNA upstream 217776 27180327 ~ 27180571 (+) True G960910
TU1095851 lncRNA downstream 4375 27405995 ~ 27406206 (+) True G961357
TU1095858 lncRNA downstream 19298 27420918 ~ 27421124 (+) True G961364
TU1096001 lncRNA downstream 230546 27632166 ~ 27632484 (+) True G961502
TU1096013 lncRNA downstream 248596 27650216 ~ 27650418 (+) True G961514
TU1096259 lncRNA downstream 283670 27685290 ~ 27685530 (+) True G961739
XM_021620609.2 mRNA upstream 574525 26812026 ~ 26823822 (+) True rab18a
XM_021620606.2 mRNA upstream 588383 26760317 ~ 26809964 (+) True LOC110535543
XM_036935246.1 mRNA upstream 646789 26713595 ~ 26751558 (+) True LOC118936350
XM_036935244.1 mRNA upstream 698071 26619583 ~ 26700276 (+) False LOC110536591
NM_001160484.1 mRNA downstream 7933 27409553 ~ 27412913 (+) False bambia
XR_002475481.2 mRNA downstream 191506 27593126 ~ 27597600 (+) True LOC110536609
XM_021620616.2 mRNA downstream 337761 27739381 ~ 27764170 (+) False mtpap
XM_036935257.1 mRNA downstream 408429 27810049 ~ 27845341 (+) False jcada
XM_036935258.1 mRNA downstream 408429 27810049 ~ 27845341 (+) False jcada
TU1095242 other upstream 469320 26928676 ~ 26929027 (+) True G960816
TU1095116 other upstream 601053 26713625 ~ 26797294 (+) False G960696
TU1095111 other upstream 646793 26749420 ~ 26751554 (+) True G960696
TU1092512 other upstream 2602611 24794600 ~ 24795736 (+) True G958300
TU1092128 other upstream 2796694 24600471 ~ 24601653 (+) True G957942
TU1095841 other downstream 7382 27409002 ~ 27412903 (+) False bambia
TU1095839 other downstream 7487 27409107 ~ 27412903 (+) True bambia
TU1096304 other downstream 361368 27762988 ~ 27765414 (+) True mtpap
TU1096389 other downstream 427126 27828746 ~ 27829177 (+) True G961864
TU1096561 other downstream 495546 27897166 ~ 27941575 (+) True G961984

Expression Profile