RNA id: XM_021620617.2


Basic Information

Item Value
RNA id XM_021620617.2
length 9297
RNA type mRNA
GC content 0.52
exon number 7
gene id jcada
representative True

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 27810049 ~ 27845341 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGCTGAAAAAAAGCATACTGTATTCATTCTGTCGCTAACCAGGGCGCGTTGAGGAGAGCTGCTGCTCCTGCGTCCCTCCAGTTGCCGCCCCGAATAGGCATGCTAAGCAAATgcccagcacagtacagcacagagcTCTCTCGGCCGCAGATACTGAACGCAGGGAACTATAGCCTACCAGACGATAACGCGACCGACGCATCTCCCAGGAGGAGAACTCAACATAACCTTTAGGGAGAGGAGTGGCGTCGAAAGGAAGGAAAAGAGGAAGCAAGTTTTGCCAGGCGTCACTTATCTTGGATTACGTGGAGAGAAGTGATGGCCAGTCAGCTGTGCAGCTGTGCTCGGGCTCCTTTCGCTGCGTCTAGCAACCAGGTCTGAGTGACGCCCCCCACCCGCCCCTCTTTCAAAAACAACACCAGCAAAACAAATGCGACCATGTACAGCGTGGAGGACCTGCTTATCTCTCATGGATACAAGCTGCCCCAAAACACCTCTACCGCCCCCACTGCCGTCTCCCCCACCCCCCCGTCCTCATACGATAACAAGCGTTATGGCGACCCTTCCTCCTGTCGCCAGGAGATCTTAGAGAGCCGGTCTGGTGGTGGTCACGGCACGGTGAACGGGTATGAGATAGACTCTGCGCCGGGGGTATATGTGTACGGCAACAATAACTGCAGGAagccccagcccccagccccaacCAAAAGCTACTCCTCGAGTCACACTGACAATGCATGGAGGGACAGGAACAGCCAAACACAGAGGAGGGAAGCCGACAGCGGTAACCAAGGTGACACCCACTCCTTGGGCGATTCTCTCACGACAGATAGCGGGTTCTGTGAGGGGCCCAGAGGGGTGTATTCAGAGTCCAGGGGCCACCGAGACGTGTCCtactggaggaggagaggccaggACTTCAGTGTTCTCCTGGATTACGCTGACTTCAGAGAACCTCGAGGAGGAGGCTATAGGTCAGAGGGGGTGCAGCAGCCGCAGAGACAGGAGGTGCCCCCAGAGGATCAGCGGCAGCAGCGTGAGAGGCAGCGTTGGGCAGTCCAGTCCCAGGCCCAGTCCCGCTCCAAGCAGAGAGAGGCAGCGCTGCAGCAGTGGACGACGGCTGCCGTGGAGAGGAAGTGTCAGAGCCTGGGCACGGACGAGTGGCGACCCGCCGTGGTCAGCTTCGCCCGCCAGCTCTCGGACAGCGAGGGCGACAGTTGGGCTCGGGCTCAGGAGCAGCAGCAACTGCAGCAGCGCCACCTCCGGACACCGGATGGCGCTGTGGTTGTAATGGGGCCCAGGAACAAAGGGAAGTCCCAGTCTCTGCCCCGAATGCTGCCGCCGGACAGCCTGCAATACGTGGCCATGTCTGGGTCTGTTGGGTCTGGGCAGGACGTGTACAGGAAGGTCAACGGCCATCCAGGGTCCCATCACGACCCTTACAACAGATATAACCACAACCAGGctgggacaggggacagggacaGGTGGTCTGAGAATGACAGCAGACCATCCAGTCAGGCTAGTATGGCCAGCCAGCTTAGCCAGGCCTCTCTGGTACCAAAGACCCGGTTCAGCCGTCCCCTGCGGCCTCCGTCCTACGAGGTGCACCAGCAGACCCGGGGGAGTTCTGAGACGCTGTCAGGAGACCCAGCAGCAGCATCAACTCCACAGCCCCAGGCCAGGGACagaacccccctcccccaccccaggATGGGTGACCCCAGGCTGGACTATTATTCACAAGATGGAGGGTCCGGCACGGATCCTCCGGGTTATATCCCTCCCCCATCGTATCCCCCCAAGAGAGCTCCTCTTATGAGAGGGGGCCATGGAGGTCACAGGGGCTATGGAGAGGTCCCAGTGAACTACAGGTACCACCAGGTGTTCCAGCAGCAACAGATGCGTGGGACCCCGGACCCCTGGTTCAGTAGCAGACACACCGGTGGAGGAGGGTCCTGGCCGGAGCCTCAGAGAGAGCCCCTCCGAGAGAGGAGCGTGCCCCACCGGAAGCAGCTCTACCCTGGCTACAGCGAGCAGCAGCACCAGCCGGGCCTGGGTCCTGGCATCCAGTACGTCCACGACCCACGTGTCCGACAAAATTCCGGGGGAGGAAGCTCGTCTCTAGGCGGCGGAGGTAACTCCATGACGGACCCCGACAACATTCGCCACATCCGTAACTCCACATCCTCTGAGCTTCCCAGTGTCACCGTGTCAGACCACTCGTCTGATGACAGTGCCTTCCTGTCCCTCGCCTCCACGGGGGCCCCGCCGACACTTGCCAGCACGTCAGATCCAGCCAGTCCGACAACGCCGAAGTCTACTAGCGACTATGACAATAAGAATAACCGGTGGAAGCAGCAGCACAGCGATTTGCACAAAGAGACTGACTCACTAGATAACTTCCCAGCAGCAACTGACCAAAACTGTAACAGGTATATTCCCAAAAACAACCTAGGTGGTTTCTCTGCCTTCCAGCCCCCAGCCACGGCTTCATCGGTGCTTCTTAGCTCCAGCTCAGACCAAGGATTCTCGGAAACAACCATCACGCAGGTGAAGAAGATAGTTCCAGGAGACTCGGGGGTAGACCACAACAACAGAAACTCTAAGAGGAAGTCTCACAGTGAGACCATATTCTGCCTGGTGTCTGTCCCCATCCACATGCAGCAACAACAAACCAATAAAGACTCAGTCTCCACAGCAGACCAGAACAATAACGAGAAGATGCCTGACAGTCTGCCAAGTAGTCTGCCTATCGTGAGCGTCTTCGCCACAGAAGACAACCAAAACACTGTGGTCCAATCAGACAACAGCCAAAGCCTCCGTAGCAAGTCGTTATCAGACATGGGTCTCAAACCCCCCTCCCACACCAGCAGCTTCAGTTCTATGAGAAGCACCAGGAAGGGTCCTCTGAGGAAGGAGATAGTAGACGCCTGGTCACTCCAGGCCAGTGCTGACAAGGAGCTGTGCTATGCCGGCTCCTGGCCCGGGGACCAGTACAGGAACCAGGAAACCCAGACCAGCTCCCCCGTGAAGGGTCCTGGGTGTACAGGGGGGACAGGTCAGCCTGGAGGACAGGGGGGTCAGGAGCCAGGCCACCCGGCCTCAGACACAACCACAGACAGCAGCGTGGGCCCCGACTGCAGCTCTGTGTCCGCATCCTACGGCGTGGGCTACCCCATGAAAGGCCAGAAGAACCTCCACCCGTCCAGCAACAGCGCCTTCTCCCGCCTCAGTATCAGCCCGGCCCAGCCCCTGTCACTTCCATCACTCCCACCCCAGCCTCCACCCTCTGGatctggggaggagagagaccaaCATACCTTCACATCCAGAAAGACTGGtgctactaccaccacctccaACACCACTACCAAACCCCCAGACGATGTCAACGCTAATAGCCAGGGCCAGGTGGCGTTTGGTCAGTTCCTGCTGAAGCCGGTGAGCCGGCGGCCGTGGGACGCCATCGAGGAGCTGGAGTGTTTCAACAAGGCTGCAGGCGTAGAACTAGACCAGATCCAGAAGAACCAGAAGGTCCAGCCCAGGAGACCCAGTGTGGACCAGTGTATAGATGACCTGGACGAGGTGTACAGGAACATCATGGAGCTGAGCGGAGAAGACACACAACATCAACATCAGCCCATAGCCCCTCCCCCTCTAGATTCTGAGCGGGAGACAGTTAGCCTTCCAGACCAGCGCCTGAATAACAAACCCAACAACAACGTCCCTACCATCAGGCCCAGACTAGACAGCTGGGGCCCTGGTTCCTCTATAGACCCAGAATATAGGGAGGTGAGGAGTGCCTTCTTCAGGCCCCAGCCCCAGAACAGGACCAGCATCCCCAGACCACTGAGAGAGGACCTGGTGCCAACTGGTTTCAGAGACTACAAACTCCACAATGAACAGAGTGACCACAGGGAAACCTATGACCCCAGGCTTACCTACAGGCAGGAGCAGGACGTCGCCAAGGAGTCTCTACTGAGGGACGTGGGGCTCACCGTCTACACTGAGGCCCCTGGGTGTCTCGGAGAGCAGGACCAGCACTGTGGCCCCACACCGCTCACATCGTTAGACCTCGAGGAACTATGTCAGAACGTACAGCTATTATGGGAGAGCGGAGAGAAACCATCTCTAGCCAAAAGCAGCCAGGTTGAGGTTGCGCACATCTGTGAGGGCAGTAATAAGGACGAGCTGGGCCCCACTAAAgtagtggaagaggagaggaaggtaaAGCCGGATAATGTACCCGTCGTGCTACCCAGATTCAGAGGCCATGTGCCCAATCTGAACATCCGCAGGGCACGGAGTGAGAACAGCAGGTCGCCAAGAGGTGAAGGGTTGCGGGGGTCACCACGACCCGGCAGGCTGACCCGGGAGGCAGCGATCGCCTTCAAGGATGGCGACTACAGATACAGCGTCAGCTCCGATCCTCTGAGTTGGCGTAACGAGGCGACGTTGGCAGATCGACACCTGGAGACCCTGCTGATCAAGGAGAAGGCGAACACCAGGCCCACGGAGGACCTGAGTAATCTATATGAGGTGAAGTGTGCCAAGGGGATCCCTGAGAACGAGACGATGGAGCAGAGAGCAGCCAGGATACTGGGGATAGACGTAGCCCCGGATTCACTGCAGAGCCGggtccaggagagagaggaggagtcacTGCAGAGCCGggtccaggagagagaggaggagtcacTGCAGGGGGTGGTggaagagagcgaggaggagggagagactggCATAGGTGAAACGCAGGCGCACAGCCCTTACAGAGAGCAGCAGAACCAATATGACACAAAGACTGGGGAAGAGACACCAGAACTCCATCCAGAAGGAGCACAGGCTGTGGAATCACTGGGCCTGGTTGAACAgaaagaggaggagcaggagcatagagacaacacagagaatCAGAGGCAACACAAAGAAGAAACCCAGGAGCACAGTCCAGACAGAGACACGGAGACAAAGCATGTGAGAAGACAGTACGAACGGATGATGGAGGTAGACGTATCCGTGGTTACCttgggagaggagaaaggaggaggaccCAGTAAGGATGACAGCCTATCAGTATATGAAGACAGACAtgctggaggaggtggagagagccAGAGCCACCCCTCCATGGTGCTGGAGCTACCGGAGTTCCCTCCCAGTAGTCTGCCCCTGTCTCTGCCCATGACCCGAGATGAGGAGCTGGCCCTCAGCGTGCTGAGTGtgggagggggtggggagaggcaAGGAAAGAAGGGACACGGTAGTGGTGGTGCCTCCCCCAGGCTCTCCTCGTCCCCCTCCTCCATATCACCTGGCTGCACGGAGAGCATGGCCCACATGGATGAGCCGTTCTCCGTCTCCTGCATCCGTGTCAGGAGTTCAGGAGAGGCAGAACCAGAACAAGAGACCGGGGTAGTGgtagaggcagagcgagagaacgACACAAACCCAGGGGAAGGGATGAGGcaggcagaggagaagagagagaggggggagatggaggagttgAGGATGGAGTCCAAGGCGGATGGGAAAAAGATAGAAGATGAGCCAGATGTcgtgcaggaggaggaggagaaagaggaagtcAAAATCAAGGGGAAGAAGGATGAGGAAAAAGAGCCAAAGAcgaaaagagaggagaagacaagAGAGGGGCAGGAGGCGGAGAAGGATGAGGTGTTAGAGCCAGATGAGAAAATAGAGGggcaggaggtggagaaggatgaGGTGGTAGAGCCAGATGAGAAAAGAGAGGGGCAGGAGGCGGAGAGGAGTGAGAAACCAGATGTCCAACAGGAGGTTAGGCCAGAGCCGGTCTCCAGACCTATgaaacctcctctcctccccaagcCCATCCCTAAACCTCGTAGCGGCACGGTGGCCAAGAGAGAGATCACCCTCCCCCTGAGCTTCAGTGTGTCTTCCTGTGGCTCCTCTCCCACCCTAGAGGACGGCGAGATGCTCTCGGACTCCTATGATCCTAGTCGAGTGGAGAGAGTGTAACCTCGACCTCTATCAATACCTTCGACATCTGGGGGGGAATTGGCTTTGGTCACCGCTCCGTCCATCCGTCCGTAAACGTTTCAGTCAATGCCTTTGTGTgtctcccaaatagcaccctattccctatatagtgcacttcttttgaccagaactCTATCGGCCctagccaaaagtagtgcactagatagggaattaGGACACAAACTTTATCTCAccccatgacccccccccccccccccccccctccaaacacTGTGCGCCCTTTTCACCAGTACAAGCATTGTTTACGCAACAGCAACAGTCTATAATGTCTGTCTGACTCTTGGTGCTCCAATGGCCTCTCGACTGCCAAACAAGAGAACCACCTGGACCCATCAGTCCTCTGGCCTTCATACTTCTACttaccctcctcttcctcctcttcaccatcctcctctccttccagacGCTTCCAGTCATTAGTGtcctacttttgactagggcccttagggctctggtaaaaagtagtacactatatagtaaatagggtgccatttgggacgtcaGCTGGGTTTTCTTGGAATTGCATGTCTGTCATCAACTGTCTCACAAATCCCAATACAACAGCACTGTGGTTCCTTCCTAGAGGCCTGATGTTGGAATATGAATGTAAAGAAGTGCTTCTGCTTTTCAAACACAAACCGTTACTATGAGATGAATCCACAAAAAGACAAACGTCTCGCATTACAATCAGTGTTACTTACGCACACACCAAATGTAAATAATAATTATAGAGGTTTAAGGTTTTATTCCAACATACTTTTGTGAGGTTTGTTGCTGAACTGTATATTTTCTTACCTGCGTTGAGAACTTAAATGTCGAAGAAGAATCCGATTTTGAAAGCTATACTCTTGAGATGTTATTACCAATGGATACATCTTTCCTGTTTTCTGTTATTGGCCGTGAGCCTGAGAATGTAATTCAATACGAGGCTGGACCAGATTGAGAATAGCCTGGACCCGGATTTGTTTTTGCTGTCCTGCCACCTCCTATGGTCATTGGTTTGACAGTTGGCATGACGGcactaacagatctgggatcaggctagatATAAAACACTGTGGTGTTTGACAAAAATGTCACTCAGAGCAATACTGTTGTTACACAGGGCTTCTCTTGGGGCTGCTTTGAGAGAGCAGCCGAGAGCCTGTGTCCTGTAAGGCCCAATCCCAAACTGCCCCCTAGACACCTACATTTGAGATGGGGCCCAAGACATTGATCTCATTACAAATCGTTGCGTTAAATCTCTACCATTTGGTACTGAGAGCACCAGAGGTGGCACTGTTAGCTAACGTCACTGGTCCTGTGTCAACTGTCTGTGAGTCGCTGGTGGTTCACCATTGGAGGGGTTCCTCGGGTGAATGCGAGGACCGTTTCCTTTCATTTCTAGTGCCATGGTGTGTCAGGACTGTGTCAGGACTGTGTCAGGACTGTGTCAGGGGTCAGATTTTGTTCTTTCAGCATCAGCAATCGCAGCGGCATTTCATTTcgcaaaatgtatttatttttgttaatcAATCCTCATACTGTACAAAAAAAGAAGTATATTTTAAGTATATTTTCAAATGTAAAAGAGGTTTATATTTAACCGTGCAGTTTCATTTGCTCACATAAATCCATTTTTGAGATATCACGTGAATATATCACGTGAATGTATCACATTTTTTCCAAAAgtgctttttttttgttgcaaggAACAATAGATCGACGTGTAAGGATCTCAGTGTGCCTTGTACACACTTCTGTTTCTGTGGTAGGctgagtcccaaatagcaccctatgccatagtgcactgcttttgaccagagccctattgaccCTAGTCAAAATGAGTGGACTATGTAGggcaggggtactcaactcttaccctatgaggtcAGCAGCCGGCTGTTCTTCTGTTCTACCTAAttattaattgcacccacctggtgtcccaggtgtaaatcagtccctgattagaagggaacaatgaaaaaatgcagtggaactggcttcaaggtccagagttgagttggaGGGATATAGGGGATATGCTGCCATTTTGAGGCGTACCAAATGTTTCTTTATgttcaacacatacagtatgtgtactTTAATGGCTAAGCTCGTTTTCTTATTTCAACATGGACATGTTGTAATTCATCCTTAATTGTATATGGATAAGACCATTTTGTGTTATTTTGGCAATAATAATGAAATGTATGTTATGGAAATCAACTATATCTTTGATATATAAAATGTTAATTCATTAACCTGATAAATGTAAACGTTCAACATATCAAACGCCTTGTAAGCTGGCAAAGCATAGCAATTCATATGTTTACATGCTCTTCACTAAGGATTTAATTGTAATTGTTATACACCTTTATGTTGTTGCTCAAATAACTGGCTTGCATATCACATTAGACTATATGTAAGGCCGTGTGTGTCATCAACCAGTACTTGTTGAAAGATCTAATTCTGAACCAAAAGAGTTTTCCATGTATAAAGACTTCAATATGTTATTTTTCCCCGCTTGCTACAAACATACTGCTATTATCTTTACCCCGGGATTGAATTTATGCGGTACGGAGGGATGTTGCGTAAGCAGGAAGTCAGTTTGAGCTTTGAGTTTGTGATACAGTAGCCCTGATATCAAGCACAGGATAATGTTGACACCATCGAATTAGAATGATTGAAATTCTAAGTAGGATTCTACTTCTAATCATTGTAATTCTATGGTTGACACTACCAACCCTCTGCCCTGTAACTCTAGGCTAGGTTCCAGGTGGACTATCGTTAAATGGTCATTCTCATAGACCTTTTGTACTGCAAGCTATTTGTAACGTAGATACTATCGTTGCATATCTTGCTGTGATGTTTTCTATTTTCATACAAAGTCTGTACAGCTTTTTTTCTACGTGCATACAGGCATCCATTTTCTTTTTGTTATTGCATGTAATTCGTAAGAAGGTGTTATGGAGAGAGAGGTATTTGCATATAATCGCATTTGGTACTATAGTCTACCCAATAAGCAGCTGTTATATTTCATATAATgcatattttatttccaaaaaaTGTACGCCACGTATTTAAAATGAAAGCAAGGTATTTTTTTGAGTATTGTAAAAAGGGAACTCTGTTTTTGGAGCCACATGTTGGTCTGTATTCATGTTATGATCATTAAAAAGGAGCATACATACAGTCAGAGTGTGCTAGTGTTGTATAACATTGCAGATTATTCATAAATAAACTCTTCGCATGTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1096289 lncRNA upstream 94563 27715142 ~ 27715487 (+) True G961769
TU1096259 lncRNA upstream 124520 27685290 ~ 27685530 (+) True G961739
TU1096013 lncRNA upstream 159632 27650216 ~ 27650418 (+) True G961514
TU1096001 lncRNA upstream 177566 27632166 ~ 27632484 (+) True G961502
TU1095858 lncRNA upstream 388926 27420918 ~ 27421124 (+) True G961364
TU1096472 lncRNA downstream 7063 27852404 ~ 27852634 (+) True G961942
TU1096483 lncRNA downstream 14017 27859358 ~ 27860622 (+) True G961953
TU1096488 lncRNA downstream 17652 27862993 ~ 27863456 (+) True G961958
TU1096579 lncRNA downstream 79184 27924525 ~ 27982293 (+) True G962001
TU1096621 lncRNA downstream 197303 28042644 ~ 28053247 (+) False G962043
XM_021620616.2 mRNA upstream 45880 27739381 ~ 27764170 (+) False mtpap
XR_002475481.2 mRNA upstream 212450 27593126 ~ 27597600 (+) True LOC110536609
NM_001160484.1 mRNA upstream 397137 27409553 ~ 27412913 (+) False bambia
XM_036935253.1 mRNA upstream 408421 27357766 ~ 27401629 (+) False waca
XM_021620609.2 mRNA upstream 986228 26812026 ~ 26823822 (+) True rab18a
XM_036935274.1 mRNA downstream 21685 27867026 ~ 28011031 (+) False svila
XM_036935263.1 mRNA downstream 69836 27915177 ~ 28011031 (+) False svila
XM_036935273.1 mRNA downstream 78189 27923530 ~ 28011031 (+) False svila
XM_036935275.1 mRNA downstream 78189 27923530 ~ 28011031 (+) False svila
XM_036935276.1 mRNA downstream 91536 27936877 ~ 28011031 (+) False svila
TU1096304 other upstream 44636 27762988 ~ 27765414 (+) True mtpap
TU1095841 other upstream 397147 27409002 ~ 27412903 (+) False bambia
TU1095839 other upstream 397147 27409107 ~ 27412903 (+) True bambia
TU1095242 other upstream 881023 26928676 ~ 26929027 (+) True G960816
TU1095111 other upstream 1058496 26749420 ~ 26751554 (+) True G960696
TU1096561 other downstream 51825 27897166 ~ 27941575 (+) True G961984
TU1096688 other downstream 287280 28132621 ~ 28214484 (+) False LOC110535556
TU1096685 other downstream 382187 28227528 ~ 28229401 (+) True G962100
TU1096773 other downstream 403986 28249327 ~ 28249912 (+) True LOC110535556
TU1100642 other downstream 2973497 30818838 ~ 30821252 (+) True G965838

Expression Profile