RNA id: XM_036935271.1


Basic Information

Item Value
RNA id XM_036935271.1
length 9230
RNA type mRNA
GC content 0.56
exon number 42
gene id svila
representative False

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 27867026 ~ 28011031 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTAGAGGGGAGCTGTCAAGAGACTCTGCTCCACTCTAACTGCACAGAGAGAACCAACGCTGCACTGCAGCCCCAACCACACGCTACTACTGCTGATCGGGGATCAGCTCCCCCactctactctttctctccctgccctTTCTCTAACACTACCTGACTCACTCCCTTCTCCTtctgcgcctctctctctctctgtgctgaggGCAGCTCGTCCCGGGGCACCGACTGACTGCGTTTTTTGTTTCTCTGCATCACCTTGCAGTCAGTTGCCTGCCTGCGGGTCGGACTTCAGCACTTCTCTCTTtccagctctctttctctatccctctcttctaTCGGTCCTCTGTACCTACCTGGTTTTGCAAGAATGTATCGGAACGCAAACCCGTGGATCTCAAACTACCTGAGCCATGTCAAGTTCTGCAGACAAGGACTTGGGAGTGAGAGCCCCATCAAACTTGGAAACGCAAGACTTCTACAGAAGACGGCTCTCGGCTTCCAGAAAGAGTTTTCGTTCGAAGGGAAGGACGACCCAGCCAAGAACACCAAGGATATAGATGTCAAGCTCTTGGCAAACCTCCCCAAAGTTTCAGAATTGAGGAAGCGTTTTGAAAGCATCAGCCCAAGCTCTAGCTGGGAAATGAACAGGAAAGAGAGGATTGCCCGGCGGTTGGAGGGGATAGAAAGTGAGGTGCAGCCCGCCATATTACCCAGCTGCCCCGGCCTAGTGACCAATCGGCTGCTAGAGGAAGACACACCCCGTTACACACGTGCCTCGGACACCTGTGACCCCTGTGTCGTGCAGTGTTACAGTAGGGAGGACCTGGAGAGTCCAGAGATGATGACCCATCAGCAGGTCCCTGCTCCAGAGAGGCAGTCCAGAGCCCGGAGCCGGCCTGAGGGCCAGACCGTCCCAACTGAACCCATTTACAGCTCTGACTCCGCAGGTACCGACCTGGACTCCAAGGCAGATCGGATTGCTCGCTACAAGGCGGAACGGCGTCGGCAGCTGGCCGAGCGCTACGGTATGTCTCTGGACCAGGAACCAGACTCCACCACCGATCACTTCTCCTCCCGATCTGGCTCCGCCCGTGGTCTCAAGGAGTCTGACACCTCTTCGGTGAGGCAGCAGGGCTACACAAATGTCAAGCCACGCCCCAGGGCGGAGTCTGTGGGGGATGAACCCTCCTACACCTCAGGCAGCTCCAGGGTGGGGAGAGTGGCCACCCAGCCACAAGGCTCCGGCGAGCCTGGCCAGGGGCGACCCAGGGTGGACTCGttcacggagagggagagggtgatgaacCTGGAGAACCAGCGCAGGGCGGGGCAGCAGGAGAGGAACATCAGTGCCCTCGAGCTTCCCTCTTCCGCCAGCTACATGGATGTGACGTCATCGTCGCCCACCTCGGCCAAGGTGCCCGTCGCTAACGACTACACCGTCACAGGGGTGCCCCCCAGCTCACCCAAGACGACCCGGAAGTCTTCACTGCCCTCCCCCAAACAGGGGGTGTCCCCTGGGGACCTCTTCATAGAGCAGCAGGCCCACAACATCCTCGGCAGACAGGGCCCGGAGGTGAAACTAACCAGCAATTGGTTCCTCCAGACCGATTCGGAAGGCAACACCCAATCCCTTATCAACTGGCCCTCCAGAATCAGAGTTAGGGAGAGGCTCGTCAAGGAGGAGGGAATCCGACAGAGTCCAGAGCTGGGCCACCGTGTCGCTGAGGCCCCCCTGTACAGGAGACACCCCCAGCCCCGAGCCACCACCTTCCCCACAGCCCACCACCATGACCACCAGGCTCCTGCCTACACCACCACCAACCCTCCAGGCCCACAGCCAGCCAACTCTCACCCCCAGCCTCAGCTCACCCGTTCTGGGCTGAGTGATGACCCCAGCTATCTGTCCATGGACACCGGCCCCGGTCCCAAGGCACAGCAGCCCCAACAGCCTCAgccggaggaggaagaggagatggtggatgaggagaggaggggcgcCCATAGGGAGGGCAGACAGGAAGTGAGGACGGAGGGACTACTGAAGAGCAGGAAAGCTGTGCTGCCATCGGAGATCAGACGCAGGGAGAAGAGCACAGAGGACCCGCGTGGGAGCGGccccaggagagaggaggagcaggctgGGTACAGCAGGGCCCGAGAAGGCCAGGGAGTAGGACACGGGAGGAAGGCTGAGCCGGAAGGGCCCAGAGGAGGGTGCatgggaggagggagaaccaggatGAGACTGGAGGAACCGGACACAGACCCTGAACCAATCAGACCTACAGGGGAACACGTCTCCCGCCTGCTGGCCGCAGAGGTCAGAGCCTCAGAGGAGCGCCAACAACCGCGGAATGACGACGCCATTTACATCCAGACCAGGGGAGGAGCCATGACCACAGACGCTCCCGTCTCCTCCAGGCGCCCCACGTCGGACACTGGGGCCCCTAGAGGCTCCATCCCCAAGACCCAAGAACCAGGGCCAGGGTGGGTCAGAGAGGCAGCAGTCCTGCAACAATGGGCCAGTGAGGATGGGATCAGTAATGGAGACCAGAGCCCTCCAGAGACCAGGGACGCTCGTGTCTCTGTGGCCAAGCTTCGCCACTCCTACCTGGAGGGTGCTACGACTGCTACTGCCCCAGTCGTCAGGAAAACAAAGCTGGAGGAAGAGGTAGAGTTGGTGTACCCGGGGGGTACGGGGGTCCCCTGGCGAGGGCAGCGGGACAGTACGGATGTCCCGTGGAGGGGGGACAGGGGGCGCAGGCCCAGACTCTACATCTCCCCCGGAGAGAGTAGAAAGACTTCCGAGAGGTTTAGGACCCAGCCCATCACCTCGGCTGAGAGACAGCTGTCTGATAGGTCTTGTTTGGGCCCAGATCTACCCAGCACTGAAGcggATGAAGAGAAGTTGGATGAGAGGGCCAAGTTGAGTGTTGCAGCCAAGCGGTCTCTCTTCAGGGAGTTGGAGAGGAGCACTGACGGGGGTGCCCCCAAACCCCAGTCCCGGAACGCGGCCATCGAGAGGCGACTGAGACGCATCCAGGACCGCTCCCGTACCCAGCCAGTCACCACTGAGGAGGTGGTCGTTGCTGCCACTGTCCCGGCTCCCTCGTCACAAACTGTGTCTGTCGATACAACCCTAGCACGCATACCGAGCCCCACACTAGTCGGCTGCACTGTGACACCGTACAGTCTGCAGGCGTCCTCACAGCGAAGCGCTGCGGCCAAGGAGCAGGCCAGGGAGGCACGGCGGGTCCAGGATGCCCTGGAGGCCCAGAGAGAGGGGCAGCGCACCACCACCATGCTCATCCAGACCTCCTCTCCCCCCGAGGAGACGCAGGCCCGGCACCATCAGGGCCATGGGGATGCAGAGCCAGATCTGTCCACCCTCAGCCTGGCAGAGAAGATGGCTCTGTTCAACAGGCTGGCCCAGCCTGCTACCAGGGTGACCCGGACCAGGCCTGATACCAGGGGGCGCAGGGCCAACGCCCGCTACCAGACCCAGCCCATAACCCTGGGAGACATGGAGCAGGACCCCTCAGACACAGACACTTTTGATGAACAGGAGCTGTGTGACGAGGGCCCAGTAGAAGTCCCTCAGGGCCAGTGCGGCATTACACAAATCCAAGCCGGGGCCAGGTTCGACCAGCTCTCCTCATCAGCTCTCAGACCTGGGGCCACGGTCTCCACAGACCACGCAGGGGACATCCACCTGGCCAGGGATTGCGGGGGTAGCCCCGCCGAGGCCGCTCTCGCTGCACCCAACCCTGGGTACTACGAGAGCTCCATCCCCCGGCACACCAGTCCTCCCACCCAGATCACAGAACCCTTCAGTGCTGTCTGGAAGTCTGTGCCCGGCCCCCACCACCAGGCCTCTCTGGATCTCCAGACCCACCAGGCTGACACGACCACAGTTCTCCCCCAAGAAGAGGAGCACGGTctgggaggagggaagaggaagctGCCCTCTCCAGAGGGAGTTGTCAGACAGGCCCCCCTGCCCCAGCCTCCGGCCTGGTCTGGGGGGACGGAGTGGGAGGAGGTGCAGCGTGTAGCCAGGAGAGGTGAGGGTGTGGAGCCCCAGCACTCGTTGATGAGATCAGAGAGCCAGGACCAGAGACTGCACCAGGAGCCGAGGGGCTATCTAAGACCGTTATCACAAGAACTGCAGGACCCAGACAGGCTTGGGTCAAAGGTCGTCAGCACTGagCTGCCGGAGCCCAGCGTGTCATCGCTGAGaacagcagtagcagcagggCCACTAAGGAGCGTGCCTCTCgctccacacacacagctgtctcaGGAGCTGGGAGGAGTGGACTCGCACACGGACCGCAGCAGTggtctgggacacacacacagcctggtcCAGTCGGAGCAGGAGGACATGGAGCTCTCCGAAGCCATGTCAGCTAGACAGATGTCCATCAAAGACAGgctgGCCCTATTGAAGAAGAGTGGCGAGGAGGACTGGAGGAACAGGATTAATAAGAAGCAAGACGTGGTGAAGGTGGCCGTGTCAGAATGCCACGCTCAGCTATGGGAGGTGGAGCAGAGCTTCAAGAAGAAGcagaggatgggaggaggagaggagacccagAGCCGCCGTATAGACATGTCTATCCAGGAGAGGAAGCAGCTGATCGTGGCCCGAGAGGAGGCCTGGAAGTCCAAGGGCCTTGGGGCTGCCAACGACTCCACGCAGTTCACCGTGGCCGCACGCATGGTCAAGAAAGGTCTGGCTTCTCCTTCAGCTCTCATCAACAGCCctgtcatgtctctcctctccaaaCCCAAGAACACCACTCCTGCCATCTCCAAGCCTCTAGAAGAGATCGAGGCAAAACCAGACATGAACCTGGAGTCAGACAGGAAGTTGGATAAGCTGGAGTCTTTCCTGGGCAGGTTGAACAGTAAAGTGGGCGGCCTGCGGGAGTCCACCATCACGGTGACGGAGAAGACTGTCAAAGAGGTCATGAACTTGGATGATGAGATGTTTGATAAGTTCTACCGCCAAGTGGCTGAGATGCCCCTGAACATGAACAGCAAGGTGGACATCAACGATGACTTTGACGACATTTTCGGTGGTACACAGATGCCCAAGCTGACCTCCGCCATGGTGCAGCACAAGCGGTCCGTGCGTCCTGTGCGCAACGTCCAGTCGTCCAGGAACCCTCTGAAGATGCTGGCGGCCAGAGATGACATCAGACAAGAGTACACGGAGCAGAGACTCAACATCGGCCTGCTGGAGAGCAAGAGGATGAAGGAGGAGAAGATGTGTAAGAACAGTGGATTCTCGGAGGTGGCTCTGGCTGGGCTGGCCAGTAAAGAGAATTTTAGCAGCGTTAACCTGCGGAGCGTCAACATCTCCGAGCAGATGTCCAACAACAGCGCCGTGCCCTACAAGAAACTCATGCTCATGCAGGTCAAAGGCCGACGGCATGTCCAGACCAGACTAGTGGAGCCCAGAGCGTCCTCTCTGAACAGCGGGGATTGCTTTCTGCTCATCACTCCTCATCACTGCTTTGTCTGGACTGGAGAGTTTGCCAATGTCATCGAGAAGGCTAAGGCTGCTGAGTTGGCCCAGTTCGTTCAGACCAAGAGAGATCTGGGTTGCCGTGCCAACTATGTAGAGCTGATCGAGGAAGGCATCAACACACACAGCTATGCTGCCAAGGAGTTTTGGAAGATTCTGGGCGGACAGGCCAGCTACCAGTCCGCGGGGACGCCAGACGAGGATGAGCTGTATGAGAGCGCCATCGTAGAAACCAACTGCATCTACCGCCTAGTGGATGACAAACTGGTCCCCGATGACGATTTCTGGGGGAAGGTTCCCCGATGCACGCTGCTCAGCCCCAAACAGGTGTTGGTGTTGGACTTTGGCAGTGAGGTGTATGTCTGGCACGGTAAGGAGGTGACTCTGGCCCAGAGGAAAGTAGCCTTCCAGCTGGCTAAACACCTGTGGAACGGAACCTTTGACTACACCTGCTGTGACATCAACCCCCTGGACCCTGGAGAGTGCAACTCACTCATACCCAGGAAAGGCCAGGGTCGTCCGGACTGGGCTGTATTTGGGAGGTTGACACAACACAATGAGACCACCCTGTTCAAGGAGAAGTTCCTGGACTGGACAGACTCCAAGAAGAAAGGCACAACCAAAAACGGCCACGAACACCTCAACGAACACAAGGAGCAACAGAGCTCGGAACAGAATACGACGCGGTCCTACGATGCGTCCTTGATGCTGCCGTTACTCCAGACCCCGGTGCGAACGGTGCTGGATGGGGTGGACGTGGGTCGGGGCTACGGCCCTGTGGCGGGGGACGACCGCAGGCACTTTGAAATCAGCACCACTGCCGTGGACGTATGGCACATCCTGGAGTTCGATTACAGCCGGCTGCCCAGGCAGAGTATCGGACAGTTCCATGAGGAAGACACTTACGTGGTGAAATGGAAGTACATGGTGAGCACCGCAGTTGGGAAGAGACATAATCCGGATGCGGTGAGGAGTGCAGGAGCTGGGAAGGAGAAGTGTTCCTATTTCTTCTGGCAGGGACGGAATTCTACCGTCAACGAGAAGGGAACGTCCGCTCTGATGACTGTCGAACTggacgaggagagaggagcacagGTCCAGGTGCAGCAGGGGAAAGAGCCTCCATGTTTCCTGCAGTGCTTTAATGGAGGGATGGTGGTCCATgcagggaagagagaagaggaggaggagaactcTCAGAATGACTGGCGGTTGTACTGTGTGCGCGGTGAGGTCCCTGTGGAGGGCCACCTGCTGGAGGTAGCGTGTCACTGCAGCAGCCTGCGCTCCCGCACCTCTATGGTACTGCTCAGTGTCTCCAAGGCAACCATGTACTTGTGGCACGGCTGCAAGGCTCAGCTCCACACCCGCGACGTGGGGAGCACCACCGCCAACAAGATCAAAGAGCAGTGTCCATTGGAGGCGGGGCTCCACAGCAGCAGCAAGGTGACCATCCATGAGTGTGACGAGGGGACGGAGCCTACGGGATTCTGGGAGGCTCTGGGGAGGAGAGATAGGAAGGCCTACGACTGCATGATACAAGATCCAGGGAAGTTCAACTTCACCCCTCGTCTCTACCAGCTGAGCAGCACGTCTGGAGAGTTTGTAGCTGTGGAGGTCTTCTACCCAGCCAGAGTAACAGAGGCAGTCAACTCACTGCCCTTCCTACAGGAGGACCTCTACAATGCCTCACAACCAgGCCTGTTCCTGGTAGACAACCACCACGAGGTGTACCTGTGGCAGGGCTGGTGGCCCCAGGATGGCGAGAGCCCCGGCTCTGCCCGTATCCGCTGGGACGCGGACAGGAAGTGTGCCATGGAGACGGTGCTTCAGTACTGCACAGagaagaatGAGAAGAAGCCTCCCAAGTCCTATCTGATCCATGCGGGACTTGAACCTCTAACCTTCACCAACATGTTCCCCTGCTGGGAACACAGGGAGGACATTGCTGAGATCACAGAAAGGGAGGCGGAGGTGTGTAACCAAATCATCCTGGTAGAGGACGTGTTGGCACGGCTGTGTAAGACCACCTACCCCCTGGCAGACCTGCTGGCGCGGCCTCTACCCGAGGGAGTGGACCCCTTACGCCTGGAGATCTACCTAGACAATGATGACTTTGAGGGTGTAGGGGCTTATGGGAAGAAAGGGCTGGAGATGTCAAGGGATGAGTACGAGCTGTTGCCAGGCTGGAAGCAGGTGAATGTGAAGAAAGCCAAAGGATTGTTTTAGTACGTTGGACAGAACGCTTGACCACCGGAcagcagcagcatcatcatcAGCGAGCGACGGTCGGTCGCTGTGGTGCATCGTGGCCCGAATTGGAACGAGGACCCGCCACTGAGAACTCTTTAGGTTGACCAAGAACGCCTTCACTTCTGGACTGGAGAGAGCTCGGAAACAGGCTCTTCTGAGTACCCTTCTCtacgatggagggagggaggaaggaggagagatgcaGTGGGTGGAGGGAGTGAAAGATCAGCGAAGGTGTGCAAGCCTCTTGTAGTCTTGTCTTTTTCTTTCATTTGTATTGTTGGTTCCCATTGTTGATTTGTATTATAAATGGAGATagttcagaggtgtgtgtgtgtgtgtgtgtgtggactcttGAGTGGATGTTTATGTAATGTCAGCACCCGGCTTGTTAaatctacactgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgaccatgccTTTACAGTATCAACCATACAGGGTCTGTCAGTATGTTCTGGGAGCAGGAAAGCCACTCTGCTCGACACACTCCAAACAGACTCTTTCTGTAAGCGGTTTCTTTCGTGTGTTTGTCTTTCCAAAAaataatttatatttatattgacATATATAATAGGAATAAAAAGCCTTTCGAGTATTCAGTCGGTGAGCTAagaaattaaataaatgtttgttaTTCATGTTGAGGTTTTCATATGTTAAGTAGTTGGAGAGTAATGCTCCTTTCCCCCAGAGACTGTACATGTCGCCATTTTATTGAAGAAATCCTGTATCTAGTGCATTCTGTTGTATCTGTTGTTGTTATGAGGATGTCCTGCATCGGTCAGGTGCTCCGATTGAAGAAAAGTGTTATATTGAACAGGCATGAATTGACAGAAATAAAAAAGAGAAAGGCAGAAGGATCTTTCTATTTGAATTCAACAATGTATAGTGCCTTGCTTTTGACGTACACTTTATATACAGGAGGACGGTAGTCTGTGTTATAAAGACTCCCTTTGTGATATAAAGTATACTGGCGAAATAAACACTTAAAGTATATCTGAGGAAGTTGTTTCGCCTCTTTATCACCTGAAATGGGACATTTTGTCTAAATGGAGGTCCCAAAATGGTAACTGTTTCCCTTTCATAATGCACTGCTTTTGAGTagagaaccctatgggccctggtcaaaagtagtgcacaaaatagggtaccatttttgggggggggggacagacatACTTCCATACAGTGCCTAAACCCTGAAAATGACATGCAGCAGCAAACTGGTAAGCCCGGTCCGTTGTTCTCTCAGATAAAATAACATGTGTATGTTTATGCGTGTGTATATCCAGTACCTGTATGATATGTATACTGACAAAAAATATAACCGCaacttgtaaagtgttggttccatgtttcatgagctggaataaaagatctcaaatgttc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1096488 lncRNA upstream 73537 27862993 ~ 27863456 (+) True G961958
TU1096483 lncRNA upstream 76371 27859358 ~ 27860622 (+) True G961953
TU1096472 lncRNA upstream 84359 27852404 ~ 27852634 (+) True G961942
TU1096395 lncRNA upstream 102662 27834110 ~ 27834331 (+) True G961870
TU1096388 lncRNA upstream 108333 27828461 ~ 27828660 (+) True G961863
TU1096621 lncRNA downstream 31613 28042644 ~ 28053247 (+) False G962043
TU1096623 lncRNA downstream 31613 28042644 ~ 28045682 (+) True G962043
TU1096632 lncRNA downstream 46057 28057088 ~ 28070019 (+) True G962051
TU1096748 lncRNA downstream 199337 28210368 ~ 28211512 (+) True G962152
TU1096755 lncRNA downstream 221232 28232263 ~ 28232466 (+) True G962159
XM_036935257.1 mRNA upstream 91652 27810049 ~ 27845341 (+) False jcada
XM_036935258.1 mRNA upstream 91652 27810049 ~ 27845341 (+) False jcada
XM_021620617.2 mRNA upstream 91652 27810050 ~ 27845341 (+) True jcada
XM_021620616.2 mRNA upstream 172823 27739381 ~ 27764170 (+) False mtpap
XR_002475481.2 mRNA upstream 339393 27593126 ~ 27597600 (+) True LOC110536609
XR_005034610.1 mRNA downstream 121091 28132122 ~ 28249486 (+) False LOC110535556
XM_021620622.2 mRNA downstream 121093 28132124 ~ 28226057 (+) False LOC110535556
XM_021620623.2 mRNA downstream 121093 28132124 ~ 28226057 (+) False LOC110535556
XM_036935286.1 mRNA downstream 121093 28132124 ~ 28226057 (+) False LOC110535556
XM_036935287.1 mRNA downstream 121093 28132124 ~ 28226057 (+) False LOC110535556
TU1096389 other upstream 107816 27828746 ~ 27829177 (+) True G961864
TU1096304 other upstream 171579 27762988 ~ 27765414 (+) True mtpap
TU1095841 other upstream 524090 27409002 ~ 27412903 (+) False bambia
TU1095839 other upstream 524090 27409107 ~ 27412903 (+) True bambia
TU1095242 other upstream 1007966 26928676 ~ 26929027 (+) True G960816
TU1096688 other downstream 121590 28132621 ~ 28214484 (+) False LOC110535556
TU1096685 other downstream 216497 28227528 ~ 28229401 (+) True G962100
TU1096773 other downstream 238296 28249327 ~ 28249912 (+) True LOC110535556
TU1100642 other downstream 2807807 30818838 ~ 30821252 (+) True G965838
TU1103506 other downstream 5373012 33384043 ~ 33385527 (+) True LOC110536614

Expression Profile