RNA id: XR_005034610.1


Basic Information

Item Value
RNA id XR_005034610.1
length 3129
RNA type mRNA
GC content 0.45
exon number 5
gene id LOC110535556
representative False

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 28132122 ~ 28249912 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAACTCACATTTCATTCTAAGATAGGACAGCATAGGCTACTTATTATATTGTGTATGCACAGATCTTGATCGGGAGCACAGAGCATTGCAGGGCTGTTCATCATAAATTCAAATACTGGTTGAAGATTAAATAACAGTCTGCATTTTTTTTGCATCATACCTCTACTGTACTTGCAAGCGTCAAGTCCTGTTTATATTGATAATTTGGAGGCTTACATTTCAACGTCGCTGATTGGCTACATTTGACGAGCTAACCCAGTATTCTAAGAGACATACCATTTCACTCAAAAAGGGGGGTTCGGGAACTATGCGCTTGCAACACATTCCATTCTTTACAAAATGCATGAAAAATATCGAAATAAATTCAAACTATGTTTTCAGTTTCTACTTGTCTGACTATTACCAACATAAATTTGAGTAAGATTTTGATTGAAAGAGCAGCGACTTACTACTCTCTCCCCCGTCATCCTTAGCTCGAGGTACAGCTCAAAATGGCTGTAGACAAACAGTTATGAAGATCTGCCGTTCTACAAGAAATGAATATGTCGCAATTGACAAATTAACGAAGAAGCCTCCAAAACAACTGGGGATACAGGGGCCCGTGGAGAGGTTCAGGGAGAGGAGCAGACCTCTGGTACCGACCCTGGAAGAGAGGAGGGACCACCTCATAGAGAGAAGGGGCCACAACAGAAGGAAGACGGAACAATGCCATtgGACATCTGCCTTGGGACAGAGCCATGACCAgtctggagccagacagaagacTGGACTCCACACTCTGACTGAAACCTTCAAGCACAACACCAGGTGTTTGGCTGCAGTCTGAGCAGCCTGTGTCAGAGGGAGAACACGTCAGTGCCCAACTTTGTCACCACGTGCATCGACCACGTGGAGACCACAGCAGGTGGCTACACGCTGTCGTCCTCTCAGAGTTGCAAGGCAGAGGAGGCCAGGGATCTGGTTTCGTCTCCCCCGTCTGTTTCCCCCCTCCACATCCCCACGGACCCCCATTAAACATGACATCAGACTCCCCCCCTGCACAGCTGTGCCCAGAGTTAAACCAAACGCACACATCTCATCTCCACCCTCCATAATTTACACAGTTTCAGCTAGCTGTGATTATAGTATAGCCCATATATCACTGTCAATATAAAGGACTATTATCAAGGATATAAAGTGGAATATGCATTTTCTGTTTTCAAGTTACAGTTATATGTGTTGTTATTCTTCTTAATGGCTGGTTTGTGTTTTCCTGTGGAAGCAGTGAGAGATGTGGGCAGGTGTTGGCTTGGCTCCCCTCTCAAAACCCCAAAGTCTTGCTAGGACAAAGAACAACTGGTTAGACTCAGCACCTGTTTTCAATGGAGCTTGGAAACAATATCCCAACTTACGCCTTAGAGTCATACAAAAACAAAACCCAGCTACGGTATCCGTGACGTGAAGGTTTGGTCTATCCCAATACAAGAGAAGATCGAAACCTTTTCATATGCATTCAGAGTCAGACATCTTTCTGCTCGCCGTTCGGCTGTGTTTAAGTGGACCCTTCCCATACACTAATCCCAATCGTTTTGACGCAATGTAGAAGAAGTTCTTTGTAGTTTTTAAAAAGAGCAACAGACTCTTTACTGTAACACCTTTCTGGACAGACAGCACCACAGAGACCTCCAGTGGTGACACAACAAAACCCTGAGGAACACCAACCCTGACCCGAGCCAAACTAATCCATTCTTCACATTATAGGAGTATTGCACACACTATATGTATTTCTGTAGTATGTTTCCAGGTGGGTTTCAAACTTCAATTCTTCCCTTAGAGCCTGAccgggaacatctctctctccttcttcctatCCTCCACCttttcttccccctcctcctggTGGTCGCGTGACCGCTCAAAATGTCCTTAAAGATGGAAGGCAGGAGAGAGGTTGTGATTTCAGGTGTTACctttctagccaatgagagggcagatacgtgtatgaacaacaggcacaactttGATATAAAGTTTCCGAAATGCCACATGCACCCACTTATATCATTGCCTTCATAACCATTACAAAAtgtatatttgatcaaataagtcCCATGTAGCGACGCAGCAATTCACATTTTTGTTGACTAAATTTGAcacactctcattgacctccatacaaaaattcCTCACTTCTTGGTCTTATtttcgtggacagattttgggcagaGTAAACCCTCtagcttcacctcttcctctccggtcatgctctctcctctcgctctgaACGCTCCCTTTGTAATCACGCCTCGGACATATGAACTCTGACCTTGGCCTTTGTCTCAACTCTTCCgtgagagggaggaaaggggggttCCTCAATCTACATAATTCAGAGGTCCACCTTGCTGCTACTGAGGCCtgcctgtcttgctctctctctctacctcactctctctagcgctctctttctacctcgctctctctctctcctccgttaaGCACACCACCATCCAGTTAGATATGAAAGAATTTCTACATTTATCAAAGCATGTCAACCATGCACTAAAGCAGCACCTGTTGTTTTGTACATTATCTGGAGTTTCAGTCTTCCTCCCACTCTTCTTGCTGATAGAGCAGAGAGGCATGGCTGGATATGAGCTATCTGTTGTTGTGTCTGGGAGTAAGGCCAGTCTCTGTGGTTTCACCTTATGAGAAGGTTGTagacgtgcgtgtgtgcgtgtgcatgtgtgtgcgtgtgtgtgcgtgcgtgtgtgtgtgtgcgtgtgtgtgtgtggtcatgggATTACATGTGAAATAACAGAATGGTCTGAAGCTGTCCCAGTGtttctctctttttatttttataaaatatagccgttgcataagtattcagctctCTGAGTACttacatgttagaaacacatttgacagcaattacagctgtgagtgttctTGGTTCAGTCTCTAAGAGATTTCCACAACTGGATTGTGAAACTTTTGCCTATTATTCTTTCTACATTTCTTCAAGGtctgtcaaggtgttggggatcatggcaagacaggaatgttcaagtcttgccatagtatTTCAAGCAGAATTAaagcctgctagctgtctgaatcgccgtgcctccagctcgcctagctact

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1096632 lncRNA upstream 62103 28057088 ~ 28070019 (+) True G962051
TU1096621 lncRNA upstream 78875 28042644 ~ 28053247 (+) False G962043
TU1096623 lncRNA upstream 86440 28042644 ~ 28045682 (+) True G962043
TU1096579 lncRNA upstream 149829 27924525 ~ 27982293 (+) True G962001
TU1096488 lncRNA upstream 268666 27862993 ~ 27863456 (+) True G961958
TU1096772 lncRNA downstream 2111 28251597 ~ 28252435 (+) True G962176
TU1096771 lncRNA downstream 3035 28252521 ~ 28252851 (+) True G962175
TU1096769 lncRNA downstream 4056 28253542 ~ 28253907 (+) True G962173
TU1096770 lncRNA downstream 5469 28254955 ~ 28255227 (+) True G962174
TU1096792 lncRNA downstream 25548 28275034 ~ 28275738 (+) True G962193
XM_036935274.1 mRNA upstream 121091 27867026 ~ 28011031 (+) False svila
XM_036935263.1 mRNA upstream 121091 27915177 ~ 28011031 (+) False svila
XM_036935273.1 mRNA upstream 121091 27923530 ~ 28011031 (+) False svila
XM_036935275.1 mRNA upstream 121091 27923530 ~ 28011031 (+) False svila
XM_036935276.1 mRNA upstream 121091 27936877 ~ 28011031 (+) False svila
XR_002475482.2 mRNA downstream 242176 28491662 ~ 28492824 (+) False LOC110536610
LOC118937385 mRNA downstream 249624 28499110 ~ 28506016 (+) True LOC118937385
XM_021620633.2 mRNA downstream 2839378 31088864 ~ 31169983 (+) True LOC110535568
XM_021620636.2 mRNA downstream 3504383 31753869 ~ 31789350 (+) False LOC110535570
XM_021620637.2 mRNA downstream 3504383 31753869 ~ 31789350 (+) False LOC110535570
TU1096561 other upstream 190547 27897166 ~ 27941575 (+) True G961984
TU1096389 other upstream 302945 27828746 ~ 27829177 (+) True G961864
TU1096304 other upstream 366708 27762988 ~ 27765414 (+) True mtpap
TU1095841 other upstream 719219 27409002 ~ 27412903 (+) False bambia
TU1095839 other upstream 719219 27409107 ~ 27412903 (+) True bambia
TU1100642 other downstream 2569352 30818838 ~ 30821252 (+) True G965838
TU1103506 other downstream 5134557 33384043 ~ 33385527 (+) True LOC110536614
TU1103419 other downstream 5208875 33458361 ~ 33473867 (+) False LOC110535592
TU1103424 other downstream 5209053 33458539 ~ 33473867 (+) True LOC110535592
TU1104418 other downstream 5353561 33603047 ~ 33603674 (+) True G969455

Expression Profile