RNA id: XM_021620622.2


Basic Information

Item Value
RNA id XM_021620622.2
length 3875
RNA type mRNA
GC content 0.54
exon number 5
gene id LOC110535556
representative False

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 28132122 ~ 28249912 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACTCACATTTCATTCTAAGATAGGACAGCATAGGCTACTTATTATATTGTGTATGCACAGATCTTGATCGGGAGCACAGAGCATTGCAGGGCTGTTCATCATAAATTCAAATACTGGTTGAAGATTAAATAACAGTCTGCATTTTTTTTGCATCATACCTCTACTGTACTTGCAAGCGTCAAGTCCTGTTTATATTGATAATTTGGAGGCTTACATTTCAACGTCGCTGATTGGCTACATTTGACGAGCTAACCCAGTATTCTAAGAGACATACCATTTCACTCAAAAAGGGGGGTTCGGGAACTATGCGCTTGCAACACATTCCATTCTTTACAAAATGCATGAAAAATATCGAAATAAATTCAAACTATGTTTTCAGTTTCTACTTGTCTGACTATTACCAACATAAATTTGAGTAAGATTTTGATTGAAAGAGCAGCGACTTACTACTCTCTCCCCCGTCATCCTTAGCTCGAGGTACAGCTCAAAATGGCTGTAGACAAACAGTTATGAAGATCTGCCGTTCTACAAGAAATGAATATGTCGCAATTGACAAATTAACGAAGAAGCCTCCAAAACAACTGGGGATACAGGGGCCCGTGGAGAGGTTCAGGGAGAGGAGCAGACCTCTGGTACCGACCCTGGAAGAGAGGAGGGACCACCTCATAGAGAGAAGGGGCCACAACAGAAGGAAGACGGAACAATGCCATtgGACATCTGCCTTGGGACAGAGCCATGACCAgtctggagccagacagaagacTGGACTCCACACTCTGACTGAAACCTTCAAGCACAACACTGAGACAGGTCTAGGTCTAGACCTCCATGCCAGGCCAGATGATGAAGAGCCTCCAGTTCAGAAGCATCGCCCCCAAGGTCCCAGCAGCGGTGGTTCCCTCCCCAGCCGCCATCCTGTCCTGCCAGCACCCCTCTGCCCTCCCGGAGGCCGCCTCCACAGCCGTCAGCCCCAAGTCTATCCTGGTCCCGGCCCAGAACTATGCCCTGATGCAGGTGGCAGGGCAGGAGGGTACCTTCTCTCTGGTGGCCCTGCCACCCTCCGTATCCCCTCAGTCGccacagcaacaacagcagcagcaacagccaATCCAGAAGAACCTGAAGCTGCCCATCCCCAGGTACCAGCCAATGAGGACCAAGAACACCCCGGAGAAGGTCAAATCAGCCACGCCCACCACCAGTGGCAGCGCCAGGGGGGTGAGGACACCCACCAAGGTTGCATTGACAACCCGGGACCATCGGTCAATAGCAGCCATAAAGAAGAAGTTGTCATTGGCTGAGCCCAAGGAGGAGCCATCAGAACAGGTCATACTGATCGACAACTCAGCCTCCTCTGAGCTCTCCGCCCTCACAGCCCTGCTCCCAGACAACGCCATGCTTTACACTCGCTCTCCACTGGAGCGAATAGCAGTGGTGGACACCACCCCCGACCACCGGTCCACTCCTGCCCACGCTCCCTGCCCTGTCACCAGCATGCTGCAGAACCTCCACTACCCATCTGGTGGCATTACTAAAAGTTCCCCGGTCGAACCATCACAGGATGAGAGCAGCGGTAAGGTTGCTATCAGGCCGTGCCAACCCAAGCCTGTAGCCCAACAGCCCCATCCACAGCCAGGTAGTAGCAGCatcactgtcctctctccagCCATCTTCAGCAAAGCTGTCCAGATCATCCCCTCCCCACCCAAGGGCAAGCTGCCCATCATGCCCTATTCCATGATGAAAGGCACCCTCATACCCACCTCCAAACTCAACCTCAATGCCATGTCCCCCAAGAAGGCTTTCCCTAGCCAGCCCGACCTCTCCCCTTATCCCTCTGATCCCCAGTCCAAGACCCCGGAGACTGCTGAGGCCCTATGTCAGAACCACATGCCAAACTCCCTGCTGCAGAGCCAGCCTCAGGCCAAGGCCACAGGCACCCTGTCGCTGCTGGGAGCGCTACAGATCCAGAAACCATCAGgtaagaagagggggaggaagaggaagacaatgGAGGACATTCTGGCCTTTGAGGCAAGGAAGAAGAGGTCCTTGTCATTCTTTCGGAGGAGGGTGCCAGAGAAGCCTTCTGTCTCAGCCGTCATCTCCTCCCCGCTGTCTAAACAGCAGAGGGAGGTGGACATCTCTAAGAAGTACCGCAGCATCAGACCCAAGCCTCACCACATGCTGCTGATGGAGACTGTACCCCAGCTGGTCAGCCtgccctccctcacctcctctgaCAGCCTGGATTCAGAGCTCCTCGTGGGGCATCAGCTCTCTGCCGAGGCCCTGGAGCCCGGTCCTCCCCAGCCAGCCTCTACCCCGCTATACCTGAAAGGGGGCCCTTCTCATAGGGTCTACCTGGGCAGTAGCCAGCCCCTCCACCGCTGCCCTACCTGCAGCCGCTGCTTCCAGTTCAAACACCACCTCCAGAGCCATATGAACAGCCACACCAACAGCAGGCCTTACCTGTGTCCTGTGTGTCGTAAGGCCTATGCTCACTCTGGCTCTCTCAGCACCCACATGAAGCTGCATCACTCTGACGGGAGACCGCGGCGGACGCTTCGCTGTGACTTCTGTGAGAAGGCGTTTGGCTACGTGGGTGTGTACTTCGGCCATTTGAGGGAGGTGCATAAGGTCATCCTGACCGtggagccgtccgtcagccagcaTGAAGACGACGTGCCTGTGGAGGGGGCCATGTCTTCAGACCTGGGGGACGAGCAGGGCCAGGAGGAGTGCGAGGACCCGGTGGAGCTCCAGATCAAGTGTGGTCGCTGTCAGGCCATCACCCCCACCTTCGCCGACATGAAGCTACACCTGCTCTATGTGCATGGGGAGGAGGTCCAGGTGCGCCTGCGGGACGGGGCTGGGGGGGTGGGAAGGTCACTGCGGGGGGGCCGGGAGGCAGAGGATGAGCTGGTGAAACACGCCGCCCACTACTGGCGCCAGCTCAATGAGAAGAGGAACCTAGTCCGGTGTGGGAGCTGTGATGAAGAGTTCTTCTCCTTCTCCAAGCTGAAGCGTCATATCCTCTCCCACCACCAGGGGGGACCGGAGGATGATGGAGAGGGGGAGCCGACCGGCCCCTCAGCccggggagggagaggggtcCTGAGGCAGGGATTGGTATTTAACTGTGTGCTGTGCAGCCAGGTCCTGGACAGTAAAGAGGAGGTGATGGAGCACTGGAGAAGCCACCACCACTGTGAGGAGACCCAGGTACTCTGGGAGGCCCTCGGCTCCTACTCGGGGGAAAGGGAGATAGACTCGCCCGACCACAGCACATGTTAACATGGCACTGGACACGTTCTAGGTCGTCTCTGTTGCAGTCACGCTGCACATCTCAGAATATTGACTTTACTTATTCCTTCTAGCCTCTAAGGAAGCAAATTGCCAGAACAGTGCATTTAAAAGATTGATATATCATATCAACGTGGTTTCTGAGATGTTATTGTGAGATCTTATAATCGGGGCGGGCGGACTACAATAGATATAACCTCGAACGTACCCACTATTTGTGTCTGTCTGAGCCGATCATGCGCTGTGTGCTGCTCTCAAACACACCCAGTTAGTCCCTATGCACACTATCCAGCCGACCCCAACCATGCAGTACAtttccagcaactatggtggcTGGGTAACCACTAACCAGGCAAGTTCAGCTCACCTCAGTATGGTGAAAGGGTATTAGTCCATACAGAGGTCAGTTATCGCACAGTTTAGTTTGTTAGAGAATCCACTTGATACATTACAAATGATTATTTTGGTATTTTGTGGACTGCACTGTGTTTTGTTTCgtgtcagtgttgatgttgtgtttatttttttaatgttttaatatttttgtttAATAAAATGGAAAGGATTGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1096632 lncRNA upstream 62105 28057088 ~ 28070019 (+) True G962051
TU1096621 lncRNA upstream 78877 28042644 ~ 28053247 (+) False G962043
TU1096623 lncRNA upstream 86442 28042644 ~ 28045682 (+) True G962043
TU1096579 lncRNA upstream 149831 27924525 ~ 27982293 (+) True G962001
TU1096488 lncRNA upstream 268668 27862993 ~ 27863456 (+) True G961958
TU1096755 lncRNA downstream 6206 28232263 ~ 28232466 (+) True G962159
TU1096759 lncRNA downstream 9232 28235289 ~ 28235532 (+) True G962163
TU1096762 lncRNA downstream 12458 28238515 ~ 28238743 (+) True G962166
TU1096765 lncRNA downstream 16181 28242238 ~ 28242464 (+) True G962169
TU1096767 lncRNA downstream 19559 28245616 ~ 28245818 (+) True G962171
XM_036935271.1 mRNA upstream 121093 27936993 ~ 28011031 (+) False svila
XR_002475482.2 mRNA downstream 265605 28491662 ~ 28492824 (+) False LOC110536610
LOC118937385 mRNA downstream 273053 28499110 ~ 28506016 (+) True LOC118937385
XM_021620633.2 mRNA downstream 2862807 31088864 ~ 31169983 (+) True LOC110535568
XM_021620636.2 mRNA downstream 3527812 31753869 ~ 31789350 (+) False LOC110535570
XM_021620637.2 mRNA downstream 3527812 31753869 ~ 31789350 (+) False LOC110535570
TU1096561 other upstream 190549 27897166 ~ 27941575 (+) True G961984
TU1096389 other upstream 302947 27828746 ~ 27829177 (+) True G961864
TU1096304 other upstream 366710 27762988 ~ 27765414 (+) True mtpap
TU1095841 other upstream 719221 27409002 ~ 27412903 (+) False bambia
TU1096685 other downstream 1471 28227528 ~ 28229401 (+) True G962100
TU1096773 other downstream 23270 28249327 ~ 28249912 (+) True LOC110535556
TU1100642 other downstream 2592781 30818838 ~ 30821252 (+) True G965838
TU1103506 other downstream 5157986 33384043 ~ 33385527 (+) True LOC110536614
TU1103419 other downstream 5232304 33458361 ~ 33473867 (+) False LOC110535592

Expression Profile