RNA id: XM_021620633.2


Basic Information

Item Value
RNA id XM_021620633.2
length 4234
RNA type mRNA
GC content 0.50
exon number 12
gene id LOC110535568
representative True

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 31088864 ~ 31169983 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACAGTGAAGCGCAGTTGAGGAACAGCCTTGAAGCGCTTTTGGAACTGCTGCAGTGAACGAACGGATACACTTCGCCCTCATCTCAGCACTCGCCACTTCGCTATCGTAGGATTTCTCAAACAGAAAAATAACTTCCGTGGAAGATACTGGCTGGATCTGAGGCCCTAAAGGCAGACTGATGGcccatgctgctgctgcagacCTATACCCAGACCAGGAGGAGTGACCCAATGACTAAATGTCTGACTAAAGACCACTGATCATTTCAAACTAACACCCAGAGGGAAGAGACCATAAACTACAATCAAGCTGTGGTTGAAGCTTTGTAACTATTGACCTGGCAGTCATGTTGAGAGGCAGAACTGTCCTTCTCCTGCTGGTCCTCTGGGCGTACCTTTGTTCCCATGGGGACGGGCTGCGTGCCCTGAAGAGGACTACAGGGGGTCGGCGGGGGGTGGCGTTGACGCTGACGGGGCAGGATGCCAACGGAGTGCCTCTGAGACGCTCCAAACGAGGATGGATGTGGAATCAGTTCTTCCTGCTGGAGGAGTACACAGGGTTGGATAACCAGTATGTTGGAAAGCTCCACTCAGACGGGGACCGGGGTGACGGTAGCATACGGTACGTCCTGACTGGCGACGGAGCCGGTACTCTGTTCATCATTGATGAGAACTCAGGAGATATCCACGCCACTAAGAGGCTAGACCGGGAGGAGAAGGCCTACTACACACTCCGGGCCAAAGCCGTCAACAGAATCACTAACACCTCTCTAGAGGGAGAGTCAGAGTTTATTATCAAGATCCATGACATCAACGACAATGAACCCAAGTTTACCAAGGATCCCTACTTCACACACGTACCTGAGATGTCCCCATTGGGCACAGTGGTGATGCAGGTGACCGCTACAGACGCTGACGACGCCACGTATGGTAACAGTGCCAGGGTGGTCTACAGCATCCTACAGGGACAGCCATACTTCTCTGTAGATCCCAACACAGGTGTGATCAAGACAGCCCTGCCAAACATGGACAGGGAGACGAAGGAGAACTATGTCGTTGTGATCCAGGCTAAAGACATGGCTGGCCAGATGGGGGGACTATCAGGGACCACCACAGTCAGCATCACCCTGTCTGATGTCAATGACAACCCACCACGCTTCCCCAAGAGTCTGTATGAGTTCAAAGCTCCTGAGTCGTCAGAGCCCGGCTCGACGGTGGCCGTGCTGCGAGCTACAGACGCTGACATTGGCAGGAACGCTGAGATGAACTACCGAATCACCAGCAGTGACGGCCCAGCCATGTTCGACATTTCAACCAATAGGAGCACACAGGAGGGTGTCATCACCCTCAGGAAGcCTCTGGACTTTGAGAGGAAGCGGTCGTACACTCTAAGGATCCAGGTGGAGAACTCCAACCCTGACCCACGGTTCCTGCGCTACGCGGCGACCACGGACGAGGCGACGGTCAAGTTGATCGTGGAGGATGTGGACGAGCCGCCGGTGTTCGACCGGGTCAGCTACGTCATGGAGGTCAAAGAGGACTCAGCCGTAGGCACCATCGTCGGATCGGTCAGTGCCACAGACCCAGACAGCAGCCGCAGCCCTGTCAGGTACTCTATTGACCGGCGTACAGACATGGACAGGGTGTTCAACGTGCACCCGGGTAACGGCTCAGTTTTCATGCTAAGGACTCTGGACAGAGAGGAGAACCCTTGGCACAACATCTCTGTCATCGCCACGGAGTTCAACAACCCACGGCTGATTAGCCGCATACCAGTGGACATCAGAGTACTGGACGTTAATGACAACGCTCCTACATTCGCCGCTTACTACGAAACCTTTGTCTGTGAAAACACCAAGGCTAACCAGAGGATTCAGACAGTGAGCGCTAAAGATGCTGACGAGCCTATCGGTGGACACAGATTCTTCTTCAGTCTAGCACACGAGGTCTCAGGGAAAGCCAACTTCACCGTCCGAGACAACAAAGACAACACGGCTGGGATCCTGACCAGAAGGAACAGCTACAGCCGGCTACAGAGGAGCACCTACCTGGTTCCCGTGGTGATATCGGACGGGGACTTTCCCATGCAGAGCAGCACCAACACCCTGACTGTGCGTGTTTGTACCTGCGACCGCGAGGGGAACATGCAGCTGTGTAACCAGGAGGCTCTGGTCCTCACCGCAGGGCTCAGCACTGGAGCCCTCATGGCCATCATCATCTGTGTCCTCATACTTCTCCtaATTGTTGTGCTGTTCGCTGTCCTGAGGAGGCAGCAGAGGAAGAAGGAGCCTCTGATCATCTCCAAAGAGGATGTGAGAGACAATGTCGTCAGCTACAATGATGAGGGGGGCGGAGAGGAGGACACCCAGGCCTTTGATATCGGCACGCTGCGCAACCCGGAGGCTATCGAGGAGACCAAACAGCGCAGGGACATCAAGCCCGAGACCCTGAACCCTCCCGTCCGTCGGACCGTGGTCCTCCCTCCTGCCTACAGGGACAACTCGGACGTCAGGGAATTCATAAACCAAAGGCTCCAGGACAACGACCAGGACCCCACAGCGCCGCCCTATGACTCCCTGGCCACCTACGCCTACGAGGGAAGCGGCTCGGTGGCTGAGTCCCTGAGCTCCCTGGGTTCCGTGACCACGGAGGGAGACCAGGACTATAACTACCTGAGCGAGTGGGGACCCAGGTTTAGAAAACTAGCTGACATGTACGGGGGAGAGGACAGTGACGGCTACAGGGATTCCTAACCAGAGAGAAGGGAGCTCGTAAGAGGAAAAAGGAAAATGTACAACAAACACTCATGCACTAGCTAAAGTGAACTTAACTCCTGGTACTTTGTGAAAGTGGCAAACAATAGAACAAAACAAGAAGGACACAAACAGACAAGGCAGTATTTTTCAAAGTGCTCTTTTGCCGTTGTTGATCACCGTTGATCTTTGACCTCACTGGAGGACCTGGACGACGGCGcttagtggtctctctctctgcaaggCAGCCGGGGACTCATGAGGAAAAGACTTGTCAAGAAGACGCTTCGTTGTATATGGGGGTACTGTACTCTGTGCATCAGGCCCCACATATATCTCTATATACAAACATACTTCTTCTCTTTTGTTTTTCAAAAGCTGCCTGCAATAGAGGGACGAAAAGCAAGCGGTTTTCTGGTGAACTTGAGAGACATCTATGAATTGTTCAGAGTTTCTGGAATGAAAAGCTGCATATTGTGAGATATATCTTAtattgtgtgtatctgtgtattgatACAATATGCTGTACAGTTCTGTTTTGTTATCAGGTTTCTAGCGTCCCATTCCCTTATAGCATTGGCTATGTATGTCACCATTTTCTTTTGAAGTCACATAAAGCCATGCTAAGAGACTGAGGGGttcaaccatagaaatagaatactCTAATTCTATGGGTACAGTCAAAATGGCCACCAGTCCACCGACTGTGGCATccttgacttgaatggggacacCCACTCTACTCATTGAATTTCTATGGGTTGTACGTCACCTTCCTGACCGTCAATAACACCTGATCCACATAGCTTTACatattctgcatcccaaatgacacccattccctatatagtgcaccaggCTACAATAGTGTGCCATTTAGGAGATCATTCTCTGTAGGGGGGAGCTGAAACACCCGGACCAAAAAGCTCCTCAGAGTGCTATCTGAAAAAAACTAATGTCAATAACACTTTGCAATAAGGTACTCTATATAAAGGGTTAATGGAAAGTGTTACCCTAATGAACTGAACATGTTCAAATTAAACATGATTCTTTACTCAGTGTTTTACTTTATGCTTTTCTTGGTTAATTAAACTGAGTAATTGATTGATGGTTGAACATCCATTTGTGATGTGCACACTGACAAAGTTTCCAGGTCTGACATATTGGGACGACAGTATGTGGGGGAGGAAGGCTAGACATTAAGGGTAATATGCCATTTTCAGTTGTAAGAAAGAATGTTGACATTCCGTTGGGATTGTCATTGACATAAGAGGTACAGGTCAACATAATATTGGGATCATAAAATGTTTTgacatatacatatgaaatggtcATTAGATTGGTTTGCCATCATGAAATGGTTTGACATATACATAGTAAGAAAATTGAGCAATTCAAATGAAGCAACTTGCCCAAGGCCAAAACATACAAATTGAACAATAGCATCATTGCAGAAGGATGACATTTAATCAGACATTTCAA

Function

GO: NA

KEGG:

id description
K06798 CDH6; cadherin 6, type 2, K-cadherin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1101056 lncRNA upstream 6043 31082605 ~ 31082821 (+) True G966244
TU1101036 lncRNA upstream 17350 31071273 ~ 31071514 (+) True G966224
TU1100538 lncRNA upstream 398464 30690135 ~ 30690400 (+) True G965740
TU1100528 lncRNA upstream 403762 30684777 ~ 30685102 (+) True G965730
TU1100524 lncRNA upstream 408802 30679766 ~ 30680062 (+) True G965726
TU1101121 lncRNA downstream 1384 31171367 ~ 31172251 (+) False G966308
TU1101126 lncRNA downstream 1384 31171367 ~ 31172223 (+) False G966308
TU1101120 lncRNA downstream 1392 31171375 ~ 31172251 (+) False G966308
TU1101122 lncRNA downstream 1392 31171375 ~ 31172223 (+) True G966308
TU1101147 lncRNA downstream 29276 31199259 ~ 31199820 (+) True G966323
LOC118937385 mRNA upstream 2582848 28499110 ~ 28506016 (+) True LOC118937385
XR_002475482.2 mRNA upstream 2596040 28491662 ~ 28492824 (+) False LOC110536610
XM_021620623.2 mRNA upstream 2862807 28132124 ~ 28226057 (+) False LOC110535556
XM_021620636.2 mRNA downstream 583886 31753869 ~ 31789350 (+) False LOC110535570
XM_021620637.2 mRNA downstream 583886 31753869 ~ 31789350 (+) False LOC110535570
XM_036935300.1 mRNA downstream 596117 31766100 ~ 31789350 (+) False LOC110535570
XM_021620651.2 mRNA downstream 1180699 32350682 ~ 32354712 (+) False LOC110535575
XM_036935304.1 mRNA downstream 1180718 32350701 ~ 32354712 (+) False LOC110535575
TU1100642 other upstream 267612 30818838 ~ 30821252 (+) True G965838
TU1096773 other upstream 2838952 28249327 ~ 28249912 (+) True LOC110535556
TU1096685 other upstream 2859463 28227528 ~ 28229401 (+) True G962100
TU1096688 other upstream 2874380 28132621 ~ 28214484 (+) False LOC110535556
TU1096561 other upstream 3147289 27897166 ~ 27941575 (+) True G961984
TU1103506 other downstream 2214060 33384043 ~ 33385527 (+) True LOC110536614
TU1103419 other downstream 2288378 33458361 ~ 33473867 (+) False LOC110535592
TU1103424 other downstream 2288556 33458539 ~ 33473867 (+) True LOC110535592
TU1104418 other downstream 2433064 33603047 ~ 33603674 (+) True G969455
TU1104419 other downstream 2434530 33604513 ~ 33604810 (+) True G969456

Expression Profile