RNA id: XM_021620657.2


Basic Information

Item Value
RNA id XM_021620657.2
length 2567
RNA type mRNA
GC content 0.42
exon number 1
gene id ppp1r3g
representative True

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 32483144 ~ 32485710 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCCTCTTTATTTTACCACATCGAATAGTGCTCTATTACGTTGCAATGACGTGAAATGAAATTGCATTAACTTTCCGAAGACTGATGCTGAACACAGAAACAGGCAGAGTTGGATGATGAGCTTTTAAATGGGCGTATCACACTAACTGAGAAGTTCCACGGGAATGTAAACTTCATCATTGGAACTGTTCCGGTGTTTATTCATAACGCACGCATTACCAATGTCTGATTCGGGCCTCCTGTCTGATTCCAAACAGTGTTCTCCGATTTCAGGTAAAACCATGCTATCGGGAATTGACGAGGAGCCAACGGAGAATGGTCATGATGAGGAGTTGAAAGATGGCATATTGGAACCGCCAGAAATGTATATGAAAGACAGGCGAAGAGCGAAATCCCTGCCCGCGTACCCAAAGCAGGCTACGCTTTTTGAAGAAATAGCCAATAACGGCCGAAAACGGGTGAAGTTCGCAGACTCTATGGGGCTTGATTTGGCAAGTGTGAAGCACTTCAGCACAACAGAAGAACCGCAAATCCCTTCCAAGGTATTTTCAAGACTGCAGAGCTTTCCCCCTCATCAACAGGACCGAGAGTATCCAATTGGGGACCTGTGCATAAACTTTCAATCCACCTTGACCATGGACCGTCTCGTCCCAACTTTCAAGATGCCAGTTGAGTCTGAACATTTTGAGACCACGGTATTGCAGCGCCACGTCAACCTGGAGAAGGTGACCATCACCCGGTTTGACGTCCGTGGGCAGATTCGGACAAATATTCAAAGTTGTTGTACGAGGGAAGTTGGTGTAAGGTACACGTTCAACGAGTGGCTGTCTTCCGTGGACGCGCAGGCGATACCCATGCCTGTGGATGACAATATTGTCGGTGAGCGTTATACCTTTACCTTGTACACACCTCCGGTCCTAGACCCAACTTCCTCGGTGCACTTCGCCGTGTACATCAGGAATGACCAGGGCGAGTTTTGGGATAACAACAATGGACAAAACTATACCTTGAAGTATCACTGTACAGGCATGGTGACCTACGAGAGCGCGGCATTTCACGCCACTTAAAACGCGCTCTTATGCACGTTCGTAAAGTTGGTGTCGTTCAACAAGTGTTCTTAGGAAGTTGTTCTCTATCACGAGGATTGATATATACTTTTCAATAAAGTTAGTATTTTTCCTTTTACATCTAGCCCCACCGTGTTATTATCAAGGTGGATATGCGTTCATAATGATTATGACTTAAGGCCTACTGAAGATTGATGTGCTGACTTTGAACCAAAAAAGGGAACCATTCTGATCCATCCTTTTTTTAAAGTAAAACATGGAGTTGCCAAGTTTACATCTGTCCAGTTGAGCACTCTGACCTCTTTTGGAACATCATTTAATAACACAAGAATTGCCATTAGGATCTGTGAATGACTGATGAACATTTATCAGCTCCACTGCCAGTGGGGACTGCACAGACCCAAGACCATACTAAAAGACTGCCAATTAAGTATTTTAAGAGACATTACAGTACAAATACCCATAATCaaaggggatgtcacctgttctACATAATATTTGCATATCATGTAATCTGATCAGGAGCGCTATCCTACTGTGCTGAGCTGTGAATTGTAATGACTTATGAATTCAGATATTTTTATGAATTGTGTTAATCAGTTTCATCATTGTGAATGTTCTCGGCCGTATTAACAATTGCAGTACAGTGCACTCCGCTAATGACAATCAAATAATCAATTTAGTGCTAAAAGAAAAGGATAGAATACATGATGTAAACATCCTTAAATGTACAATGTCCTTGGCACTGTACACATTGTCATACTTATAAGCGCCGGGCACTGTACTTCATATAGTCAACTCATACAGTGTGCACCACCTAATCCTAAGTGAAACAACGGTAAAAGATAATGCTAAACTTGTGGCAGCCTATTTCTTAaaagagtgcactacttttgacccataGTGCAATGTTTTTGATCTCTGGTCAAAAGCATTGCACTAAAGGGAATGGCTGATCTTAAGTAGTGTACCATTTCAGTCATAGCCTTTGATTCAGGGCCCAGAATATTGCAGTTTGAAAATGTGGGACTTATCCTAGTTATAAAATCATGTGAGAAGCTAAATCTGCCAGAGTTCTCTGCCACAAACCATATTAATTATTGTTTGTACTCCCATGGACACCAAGGAAAGATTTAATGAGCAATCTGTTATATTGGTGTGGATGGCTACACAGTGAACGGCTTGTAAGATCTTGAACAGTGAATATCTACACTGGACTGTTAATTGGACTCGTCAATTcttgattatatattttttgatgatttgtgtatttgtattgtatttgcgAGACATTCTGCTGCACTGTTCGAGCTAGTTTATAGTTAATTCGCCATCAGTCAGCATCTCCACACAAAATAGTTTTTCTGGGTGcgcgccagctcatgttttttattctattgttggagctagtaacaatCATTTTGCTGCACCTGGTATAACATCTGCAGATCTGTAATCACaaccaatacactttgatttcAATAAAATGGTCTAAGAGGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1102836 lncRNA upstream 2576 32477622 ~ 32480568 (+) False G967959
TU1102837 lncRNA upstream 2576 32478853 ~ 32480568 (+) True G967959
TU1102860 lncRNA upstream 53642 32429293 ~ 32429502 (+) True G967982
TU1102859 lncRNA upstream 53869 32428896 ~ 32429275 (+) True G967981
TU1102858 lncRNA upstream 55385 32427445 ~ 32427759 (+) True G967980
TU1103009 lncRNA downstream 181099 32666809 ~ 32667565 (+) True G968129
TU1103010 lncRNA downstream 181956 32667666 ~ 32667918 (+) True G968130
TU1103033 lncRNA downstream 225226 32710936 ~ 32711888 (+) True G968152
TU1103036 lncRNA downstream 229931 32715641 ~ 32715992 (+) True G968155
TU1103039 lncRNA downstream 234115 32719825 ~ 32720350 (+) True G968158
XM_021620655.2 mRNA upstream 6667 32462425 ~ 32476477 (+) True LOC110535578
XM_021620653.2 mRNA upstream 92339 32371461 ~ 32390805 (+) True LOC110535577
XM_021620651.2 mRNA upstream 128432 32350682 ~ 32354712 (+) False LOC110535575
XM_036935304.1 mRNA upstream 128432 32350701 ~ 32354712 (+) False LOC110535575
XM_021620652.2 mRNA upstream 128432 32350711 ~ 32354712 (+) True LOC110535575
XM_036935306.1 mRNA downstream 63779 32549489 ~ 32665562 (+) False fars2
XM_021620658.2 mRNA downstream 63986 32549696 ~ 32665562 (+) False fars2
XM_021620660.2 mRNA downstream 63986 32549696 ~ 32665562 (+) False fars2
XM_036935305.1 mRNA downstream 64237 32549947 ~ 32665562 (+) True fars2
XM_036935313.1 mRNA downstream 352390 32838100 ~ 32859519 (+) False LOC110535587
TU1100642 other upstream 1661892 30818838 ~ 30821252 (+) True G965838
TU1096773 other upstream 4233232 28249327 ~ 28249912 (+) True LOC110535556
TU1096685 other upstream 4253743 28227528 ~ 28229401 (+) True G962100
TU1096688 other upstream 4268660 28132621 ~ 28214484 (+) False LOC110535556
TU1096561 other upstream 4541569 27897166 ~ 27941575 (+) True G961984
TU1103506 other downstream 898333 33384043 ~ 33385527 (+) True LOC110536614
TU1103419 other downstream 972651 33458361 ~ 33473867 (+) False LOC110535592
TU1103424 other downstream 972829 33458539 ~ 33473867 (+) True LOC110535592
TU1104418 other downstream 1117337 33603047 ~ 33603674 (+) True G969455
TU1104419 other downstream 1118803 33604513 ~ 33604810 (+) True G969456

Expression Profile