RNA id: XM_021620661.2


Basic Information

Item Value
RNA id XM_021620661.2
length 1118
RNA type mRNA
GC content 0.45
exon number 3
gene id LOC110535581
representative False

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 32489195 ~ 32549643 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACTGGCGCTTACTAACCACATTTAATCGAGGTCCTGAGTACGACCGAAGGTCGGAGTGTTTTTTGCAAGATGGCAGCCTCTACAGCCCAGGTGCTTTCTCTGTATCGCAAGCTTATGAAAGAAAGCAGTAAATTTCCCTCTTATAATTACAGGACGTACGCCTTGCGCCGGGTGCAGGATGCCTTCAGGGCAAACCGGAGTGTAGAAGACCCTAAGATGGTGGAGCAGCTCTTAAACCAGGGCAGGGACAACCTAGACATGATCCGGAGACAGGTTGCCATAGGCAAGATGTACCCGACCCAGAAGACTATTGTTGAGGGGTAGGGTTCGAAGAGAAACCACCGATGGGCATTGATGGAGTGTCTCAGAACGAGAGGAAACGATGCCCAAGAGACCATGGGAAACGGAGCACTGAACCTCAACCTCACTTTCCCTTTCACACAGAAGCTTCATTTTCCGACGCCCTCATTGGATGGATAGGGGGAAAGCCTATGGGTTGGGCCTACTTTGTCCGACATTCTTTACCAGTGTTCCCAACCCTCCACATTTTTGTTCTAGCCCTGCACTGATACACATTATTCAACTAGACAGGGGCTTGCTGATGTAGTTGATAATGTGAATGTGTCAGTGCAGCCCTAAAACAAAATGTGGACTATCTAGCGTTCCCCACgagagggttgggaaacactgccctaaACATTTTGTGATGGACTGTCGTAGATCTGAAAGCATCAGATAggcctacattttttttttgataATGCCACCTAGCCTTTTGGTAGGCAATAAAGATTCTACCATATTGctcacacctttacacacatatatatatatatatatatatatggtaggAAGAGACAAGGGGATGGTTGATTTCCGACTTGGCAACTGTGCAGCGTTGACGACGTAACGATTGTCCTTGGtccctatatactgtaccctCTTCACCATACTAAAATAATGAGCTTCTTTTGTGAGCTGTAAGAGTTGTAGCAGTGCCACGGTGTACACACGGTCTTGATTCCCtgttatatttttctattgtgtgttGTATATATGATTTGTCGTCATGTAAGATGGTGTATAAACAGATTAAAGATATGCGGATCTGAATCGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1103683 lncRNA downstream 863 32486998 ~ 32488332 (-) True G968751
TU1103681 lncRNA downstream 2521 32483301 ~ 32486674 (-) True G968749
TU1103680 lncRNA downstream 8651 32477612 ~ 32480544 (-) True G968748
TU1103651 lncRNA downstream 58124 32430832 ~ 32431071 (-) True G968722
TU1103649 lncRNA downstream 60195 32428600 ~ 32429000 (-) True G968720
TU1103777 lncRNA upstream 86850 32636493 ~ 32666377 (-) True G968844
TU1103808 lncRNA upstream 133643 32683286 ~ 32683521 (-) True G968875
TU1103830 lncRNA upstream 164080 32713723 ~ 32714040 (-) True G968894
TU1103833 lncRNA upstream 167743 32717386 ~ 32717601 (-) True G968897
TU1103838 lncRNA upstream 289107 32838750 ~ 32879586 (-) True G968901
XR_002475485.2 mRNA downstream 53744 32434028 ~ 32435451 (-) False LOC110536613
XR_002475486.2 mRNA downstream 53744 32434028 ~ 32435451 (-) True LOC110536613
XM_021620649.2 mRNA downstream 174320 32298402 ~ 32314875 (-) True LOC110535574
XM_021620644.2 mRNA downstream 174453 32298402 ~ 32314742 (-) False LOC110535574
XM_036935309.1 mRNA upstream 145719 32695362 ~ 32702585 (-) True LOC110535582
XM_036935310.1 mRNA upstream 172630 32722273 ~ 32749027 (-) True LOC110536595
XM_036935311.1 mRNA upstream 218122 32767765 ~ 32796075 (-) True LOC110536597
XM_036935318.1 mRNA upstream 704731 33254374 ~ 33295928 (-) False LOC110535590
XM_021620671.2 mRNA upstream 704731 33254374 ~ 33304895 (-) False LOC110535590
TU1102404 other downstream 436002 32050960 ~ 32053193 (-) True G967535
TU1101512 other downstream 1097851 31391036 ~ 31391344 (-) True G966663
TU1097678 other downstream 3766892 28721646 ~ 28722303 (-) True G962982
TU1096457 other downstream 4652427 27835966 ~ 27836768 (-) False G961930
TU1095499 other downstream 5686369 26737174 ~ 26802826 (-) True G961041
TU1103801 other upstream 117109 32666752 ~ 32667490 (-) True G968868
TU1105079 other upstream 1325171 33874814 ~ 33875272 (-) True G970066
TU1106227 other upstream 2260650 34810293 ~ 34842512 (-) True LOC110535616
TU1106251 other upstream 2287329 34836972 ~ 34838926 (-) True G971137
TU1107574 other upstream 3323026 35872669 ~ 35873258 (-) True G972383

Expression Profile