RNA id: XM_021620663.2


Basic Information

Item Value
RNA id XM_021620663.2
length 2634
RNA type mRNA
GC content 0.45
exon number 8
gene id LOC110535587
representative True

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 32838100 ~ 32859519 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGTCTTCTGAAATAAATAACTAATGAACGTACGATAGACGGACTGGGTCGAATACAGTGGATTTATTCGGTTTTCATCGTCACTGTTGTTTTGCTTTCAAGTAATCGGTCTGGCTAACTGCACATAGCACAGGGACATTACGAAATAGACAGACGTGCAAAGTCGGTTAGAAAAGGCGACTTGATCGGACAGAAACcgtactaacgttagctagctaatctCTGTCAAATTAAATCGGTCAAAAGGGATGCCGCTGAAATCCAAATCAGACGGATATTTGGATTTAATGTCGTCTCATTTAATCGGCAGAAGCAGTTTTCCGATAAAAGGTTGTACGATAAATCAATTTCGAACGAGTGTATTTTTAAATTGCTGAATTTGAGGAACTAAACGTTAGTAGGTAACCTTAGTCTGACGAATTGAAATCACGGACCGAAAGTGCTACGCTAACATACTAGCTAATTTGCCTGGgcagacaacaacagatctgtTTTGCATTATTGCCAAATAAACATTGCGAGTGAAATTGGTGAAGACGTTTCAGTTCCACAAAGAGTGCTGACATTATCTTTGACTTTGGCAGCAATGAAACTGTTAGAGAACAGCAGTTTTGAAGCTCTGGGCTCTCAACTTTGTGTTGAAACGGGAGAGTCTCACATCCTGGGCAGGATCGAGAGCTACTCCTGCAAGATGGCTGGTGATGACAAGCACATGTTTAAGCAATTTTGCCAGGAGGGGGAGCCACATGTCCTAGAGGCCCTCTCGCCCCCCCAGTCCAGCGCCACCAGCCCATCCCAACTGGGGAAGAGCAGTGAGGACGCCCAAAACCCTCTGAGTGACAAGTGTTGCAGGAAGACCTTGTTCTACCTCATCACCACGCTCAACGAGTCGTTCAGGCCCGACTACGACTTCAGCGCAGCCCGGGCCCACGAGTTTAGTCGTGAGCCCAGCCTCAACTGGGTGGCGAATGCAGTGAGCAGCAGCCTGTACTCATCAGTTGGGGTGGAGTTCAACTCCCTGGGGCCTGAGCTGTGGAACTCCATCGACCAGGAAATTTGCCTGCAGGATTGTGACATTTACAGCTACAACCCTGACCTGGACTCAGACCCCTTTGGGGAGGAAGGCAGCCTCTGGTCCTTCAACTACTTCTTCTACAACAAGAAGCTGAAGAGGATTGTATTCTTCACCTGTCGCTCCGTCAGTGTCTTGAGTGGGTATGGCTGCGGTTGTCTGGACAACGAGTTGGACATGGAGCTGGATGATGAAGAGGAGATGGATGGATTCACTGAGGACAGGTTCCCCAGAGCTCTTTGTGTCTAGGCACATCCATGCCAAACTTCTACGCCTACACAACCTCCTCCCCCTTCATCTATCCTGTTTCTTATTTCCTCAtcattcttgttttttttctttttctcgaTGTTCTGTACAGCCTGACCCAGGAAGCCATTTGCTCATGTAGAGGAAAtccattttttttctccccattGACAAGTGCATGTTTCACGCCTTTCACATCAGCTCGATCCGACCCATACCGTGAAGGACGTTTTCTAAATGCCCAGGGTAACTGGGATCTAGGTCTCCTGTTTATTGTGCTTCCTCTATCTTCCGTTGTCGCTGAGCTAAGAACTGACTCTGCCTAATAATTTGATGGAAGGACCTTCCTTTGCCTCTCAAACCACATCCTCGTCACCTGAAACCAGCCTCTGCTTGGATGCTGCACTCTTAAAGAAACCCTCCCAATACTTATTGGATCTGTCTTGGACATTTATGGTCAAGAGAGACCATGGACAGCTAACTCTGACAAGCAAACATTTTCTTTTATTAAAAATCGCAGCAGATGATGTCACAGAAACGTCTGTGTAAGTGGAGATAGAAGTCCACAGTGCAACACCAGCATCAGTGAGAGCCATGGAAGGGGAGGGGCTTATTACATCAAACTTCTCCAATCCCACACTGGGTAGAGGATGGGACAACGACAGCTAATTCGATTGACTGTCTATCCAGCTGATTTCCATTTGTGACTGCTTCCTTTGTGTGGCTTTTATGCTTGACAGTGGTGTTAATGTGAGAATTGAAAACTTTTGTAGCTCCCAAGTTTTTAAACGAATGCTGCTTTTGTAATGGAAAcattgtaatatcttatgttgtcTTATTACTGCACATGACATGTGTAGATGGGAGATGGGAGATGACTCTGCCAAGGAAAGCAATATGACATCAGACTTGCAGCTTATACAAGATCACTTTCATGAGCGCCTCTGTCACATTGTTCTGCCTATCAGTAACCATGTTCCTCAATGTGTGATTTTTCTGATTCCCTTATGATTTAGGCTGACCTATTGTAAAACTTGTACCCATTTTCCTCTGCTACAATCATCCATTTATTTTATGCTCAAACATTACAAAGGCTTTGATGTAAAGCCAAGTGAATGTACTAAACACAGGCAGCAAAGGCATCAGCGATAGTTCCAGTAATGTTATTAAAGTGTTTTACAGTATTTTTTAGAAAGACAGACCCTTTTATCTCTGTGTTCCCTGTGTAAGGCTTGTGAACCTCCCATGATGACCTCCGTTCAGGACCTGTTTTGATTATACAGCATATGTTAATAAAGTTGTGTTTGAACCAAA

Function

GO:

id name namespace
GO:0016480 negative regulation of transcription by RNA polymerase III biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1103039 lncRNA upstream 118362 32719825 ~ 32720350 (+) True G968158
TU1103036 lncRNA upstream 122720 32715641 ~ 32715992 (+) True G968155
TU1103033 lncRNA upstream 126824 32710936 ~ 32711888 (+) True G968152
TU1103010 lncRNA upstream 170794 32667666 ~ 32667918 (+) True G968130
TU1103009 lncRNA upstream 171147 32666809 ~ 32667565 (+) True G968129
TU1103150 lncRNA downstream 9675 32869194 ~ 32928077 (+) False LOC110536598
TU1103149 lncRNA downstream 67829 32927348 ~ 32928077 (+) True LOC110536598
TU1103397 lncRNA downstream 411885 33271404 ~ 33272172 (+) True G968494
TU1103463 lncRNA downstream 467168 33326687 ~ 33326975 (+) True G968545
TU1103467 lncRNA downstream 473221 33332740 ~ 33332999 (+) True G968549
XM_036935306.1 mRNA upstream 173150 32549489 ~ 32665562 (+) False fars2
XM_021620658.2 mRNA upstream 173150 32549696 ~ 32665562 (+) False fars2
XM_021620660.2 mRNA upstream 173150 32549696 ~ 32665562 (+) False fars2
XM_036935305.1 mRNA upstream 173150 32549947 ~ 32665562 (+) True fars2
XM_021620657.2 mRNA upstream 353002 32483144 ~ 32485710 (+) True ppp1r3g
XM_036935315.1 mRNA downstream 26268 32885787 ~ 32928578 (+) False LOC110536598
XM_036935316.1 mRNA downstream 26269 32885788 ~ 32928578 (+) False LOC110536598
XR_005034611.1 mRNA downstream 69701 32929220 ~ 32945244 (+) False LOC110535588
XM_021620664.2 mRNA downstream 69708 32929227 ~ 32945244 (+) True LOC110535588
XM_021620665.2 mRNA downstream 86249 32945768 ~ 33234543 (+) True LOC110535589
TU1100642 other upstream 2017460 30818838 ~ 30821252 (+) True G965838
TU1096773 other upstream 4588800 28249327 ~ 28249912 (+) True LOC110535556
TU1096685 other upstream 4609311 28227528 ~ 28229401 (+) True G962100
TU1096688 other upstream 4624228 28132621 ~ 28214484 (+) False LOC110535556
TU1096561 other upstream 4897137 27897166 ~ 27941575 (+) True G961984
TU1103506 other downstream 524524 33384043 ~ 33385527 (+) True LOC110536614
TU1103419 other downstream 598842 33458361 ~ 33473867 (+) False LOC110535592
TU1103424 other downstream 599020 33458539 ~ 33473867 (+) True LOC110535592
TU1104418 other downstream 743528 33603047 ~ 33603674 (+) True G969455
TU1104419 other downstream 744994 33604513 ~ 33604810 (+) True G969456

Expression Profile