RNA id: XM_036935322.1


Basic Information

Item Value
RNA id XM_036935322.1
length 4622
RNA type mRNA
GC content 0.43
exon number 16
gene id LOC110535592
representative False

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 33411705 ~ 33473890 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTCATCGTTTGTGCTGCTGGCAGAATACTAGTCACAGAAGTGTATGTAGCCTGAGCCGTTTCTTCTGTTGACCATAGACAGGTTTTATGGACGTCAGTTGTACGACTAGCATTCAGTGGGGCAATTGatttgcatttgcaatatgaagaATGGAAGAAGACGATGTTACTATCAGAGAGCAGAATTTCCACAGCCAAGTTCGAGAGTACATTATTTGTTTCCTACTGTTTGCAGCACTCTACATTGTGTCGTACTGCATCATCACCAGGTACAAGAGGAAAACAGATGACCAGGAGGATGAAGACGCCATCGTCAACAGAATATCGCCTGTGGAATCTGGTATCGCTCTTCTCCAATCTCTGCCTCTTCGTCCTGATGCCGTTTGCCTATTTCTTCCTGGAGTCCGAGGGATTTGCTGGATCAAAAAAGGGCATTAAGTCACGGGTTCTAGAGACCTTTGTGATGCTCTTCCTCCTCGGACTGCTCATCCTAGGAATAGTCTGGGTGGCGTCCGCGCTCATCGACAATGACGCAGCCAGTATGGAGTCACTCTATGATCTCTGGGAGTTCTACTTACCATACCTCTACTCCTGTATATCTCTGATGGGGGGACTGCTCCTCCTGATGTGTACTCCTGTGGGCCTGTCCAGAATGTTCACAGTCATGGGCCAGTTACTAGTCAAACCAACCATCCTGGAGGACCTAGATGAGCAGATTTACTGCGTTACTTTGCAAGAGGAAGGCCTTCAGAGGAGATTGAACGGGTCGACATCTCACTCTCATTCCCAAGGAAGTGCTCATCGACTCAACAAAGAATTGGACATCGTCCGAGATCAGAGGAATAAACTGGagaggaggaagaaagcCTCTGCATGGGAAAAGAACCTGCTCTACCCCATTGTGATGTTAATACTACTCACAGGGACGacCATCTCAGTCCTACTGGTGGCGCTGAATATCCTCTATCTGCTGGTGGATGAGACTGCCATGCCAAAGGGATCAGAGGATCGGGGGCTTGGGAACACCTCGCTGTCCACGTTTGGACTGGTCCAGGCTGTCGTCGACATCATCCTCATGTTCTACTTGATGGTGTCCTCAGTTGTCGGCTTCTACAGCTTGCGAGTGTTTGAAGGCCTCACTCCCAGGAAAGACGACACGACCATGACAACGATCATTGGTTGCTGTGTGTCCATCCTGGTGCTGAGTTCAGCCCTGCCAGTCATGTCCAGAACACTTGGTATCACCAGGTTTGACCTTCTCGGAGACTTCGGCAGATTCAATTGGCTGGGAAACTTCTATATCGTCCTATCGTACAACTTGCTGTTTGCCGTGGTAACTACTCTCTGCCTAGTCCGGAAGTTTACCTCAGCGGTCCGAGAGGAACTCTTGAAAGCATTAGGTCTGGATAAATTACAACTGTCAAACAGCCCCACAGACCCGGAGTCTGGGAAGCTCTCGGCCAACGGGCATCAGAAGACTCTGTAAAAGAgacaaccgacacacacacacacctaacggCAGCCAAAGGGAGATTTTGATAGTACCGAACTCCACAGCAGAAGGTGAAAGGGATTGAGTCTGTGGAAGCGACTTAGTATACTCCCACAGTGTCTGACGGGCTTTGCGAACTGAGAAGAAACTGCAATTTAGCTTCGTGACATTCCTTCCtcgtggatggatggatgcaggACAGGGACTGATTTGAGCCCTCTGACAGACTGCCGTCTTCACAACAGTGACCTTGATGTTGACCTCAACAGTGACTGTGACCATGGGCCATAGCCGATTTCTTTTCCCTCAGCACcaactttcttctctctctttgtctattCTTATCTCATTCTACCCTCTACCCTTTTGTGGAGCACtcccgtcctgtaggttttcactccaactctAATCTATCACacttgattctaataattagctggttgataagctgaataaggttagttacaactggggttggagcgaaagggtagctctccaggaacagggttggagagctctgCTCTAACCAATCTCATTCTAACCTCTTGTGTTTCGCGCTTGCCTAATCACTTCTTATCTGTTATTTTCTCCCCCATAACCTAACCATTGCACTATGCCGTATTGTCTTGGAAGATGCAATGTAACCTTTTGACTTGTGGCCATTTTTACACTTACGTCTACACCCTGTTCTATTTCCAACACAGTTTAAAATACATGTTAGTTATAAAATGCAGCTCAGGGttatttggagagagagagagagaaaaaatgccGTCTCACCAAAGTATAATGAGAAGACAATTCCATTTCAGAATTAGAAAGTACATGTGATGTGGCCGTGGGGGCATTCACAATGGATTACCTGTATTGTGGTGGTCTCCAACAGTCATCTATTTCAGTTTGTCATGTAATGTATGTTATATGTGTGAAGTATGGATGGCTACTGGTTTAATAAGTGGACATTTTTATTTGTTAATGTCAGAAGATATGTGAAAGATGACGCCGTTCTATGATAGACTTGCTTTGAAAGCACCTTGCATGGAAAATAAATCgtacttatttttattttttttttacctttatttaactaggcaagtcagttaagaacaaattcttattttcaatgacggcctaggaacagtgggttaactgcctgttcaggggcagaacgacagatttgtaccttgtcagctcgggggtttgaacttgcaaccttccggttagtagtccaacgctctaaccactaggttaccctgttGCCCCGCCTCTTAGCCATTTGACACGTCATACCCAGTTGCTTTGCTTGTCCTCACAGGTGCCTGTGTATTACCACTTCTTTGCCGGTACATTTAGTACCCGTTCACCACAGTGGCCACACCGGAGCTCCATTGACACAGAAAGAATGGGGTGGCACTGTGGAGGCGTGACTAGCCAAGCCTTCCATCTTTCTGGTTGTCGCAGGCCAGTTGTGAATGTGTAACAATGTGCTCTTTTTTATTTCCCTTTACTCGTAGTCTGTAGGCCTACTGTGCTTTTTAATTTCATAaaagatgtagttaattattttGTATTGATTTAATGAATGTTGTTTTCGGTGCTGTCGATTTCGATCACTCTAGAGATGGGAAAAATGATGTCTTTTTTTGGGGTCCCAAAGAGCAAAGATCGCAGCTTTCAGAGTTTGATCCTGTGGGTGAATGTCCTAAAAAGGTTGTGTGTTGGTAAACTTGATCTCGATCTCCCCAAATAACTATTAAGCTATTTTAAAATGTATCTTATTTCACCTGGCATGAAGCTTTGTTGAACTTCTTCCTATGGTTAATGTTGTATTTGTACATACCATTTATGTTTCATACCTCTCTTGCATTATTTGGATGTAAATAGTGGGCTGCCGTTAAGCCTCAAGTATTTGTTGTAAATAAGTCTACAGAAGCTCTTTTTGGACTGTGACACTACTTGTCACTAGAAGCACCTTTTTATGCCTTAGCTAGCAGGAGGAATTCACCACTGTCTTTATAGGAGGctcctatttgtgtgtgtgctcacgTGTAGGtatgtttgtttaaaaaaaaagacaacTTTACTGTGAACACCTTGTCTCTGGATTTCAATTGCAAACCAGTTTGAACTTCTTCATTGTCCTTTGCGGTGAATGTAGTATATAATCTCCCCTTAACACAAATAGCCATAGTGGGCTTCCAAAAATTACCAGATAACCTGAGCACTTGTGAAAAGGGAAGGTGATGGGCCCCAATAATTAATGTGTCATAGACTGTTTTTatgatgtgtttgatgtgttttcaTTGTGACTTGTCATGATGCAAATGGCAGGAGATACGATTAACATATTTTATTAAAATATGCATTTGAGACTTGTTTTTTACAGGgactgttttatttttaaaaaggAATGTATATTATACAGTAATAGTTTGGATGAAATTTAGGCTCACCTTAGGTTCTGGAGTTCGCAGTGCCAAGCCTTGTACTGTGTTCTGtcccctcattaaaatgcaagaTTATGAGTGATCCAATTTCACATCTCAGGTTGATTTGGTAATGCTGATGATAAATGATACTGTGAAAATCcagaattgaaaaaaaaaatcactaacCAAAACCCATTACTACTGTGGCTAATAACGTCTGTTTTGTGTTTCCTTGATGACTGTGACCCCCTTTGTGTTCCTCTCACCCTCAACTATCAGTTTTATtaatttaataaatatatatttttattgctATTTCAGACAATGTTTATGCTGCATGTATTATTGGTTGAAGAAGTACACCAGTGATCACAATCTATTACAATCTGACTTTTCCATTTAGTTTCTGTGGAGGACACAGTCGAGGCTCGTTCCAACCTAAGGGAACACttttgattgccttgcagtttTTTTTCTCCACTCGCAGAGGGTTTGAAATGTTGAGGGGTGGCCTGTACTGTCGGTGGAGTAGCTGGTagttttgtctgtctgtttgattTTCTGTGTCTGCATGTAATTTCCTGCCCATTTATgtgaatgtatatatatttttttaccttgttcTTTTCTGAGTtgctatatatgtatgtgtgttgttgttttacGATGTTGGTTTGTTTgcaaataaaacaatgaaaatcA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1103467 lncRNA upstream 78708 33332740 ~ 33332999 (+) True G968549
TU1103463 lncRNA upstream 84732 33326687 ~ 33326975 (+) True G968545
TU1103397 lncRNA upstream 139535 33271404 ~ 33272172 (+) True G968494
TU1103150 lncRNA upstream 483630 32869194 ~ 32928077 (+) False LOC110536598
TU1103570 lncRNA downstream 1011 33474901 ~ 33475134 (+) True G968649
TU1104308 lncRNA downstream 9006 33482896 ~ 33483106 (+) True G969346
TU1104309 lncRNA downstream 10547 33484437 ~ 33484861 (+) True G969347
TU1104310 lncRNA downstream 13393 33487283 ~ 33487561 (+) True G969348
TU1104377 lncRNA downstream 63693 33537583 ~ 33537809 (+) True G969415
XM_036936614.1 mRNA upstream 25332 33383589 ~ 33386375 (+) False LOC110536614
XM_021622362.2 mRNA upstream 25333 33383589 ~ 33386374 (+) False LOC110536614
XM_021620665.2 mRNA upstream 177164 32945768 ~ 33234543 (+) True LOC110535589
XR_005034611.1 mRNA upstream 466463 32929220 ~ 32945244 (+) False LOC110535588
XM_021620681.2 mRNA downstream 99812 33573702 ~ 33582073 (+) True shh
XR_002475280.2 mRNA downstream 170943 33644833 ~ 33690458 (+) False LOC110535596
XR_002475279.2 mRNA downstream 170943 33644833 ~ 33690571 (+) False LOC110535596
XM_036935330.1 mRNA downstream 434826 33908716 ~ 34150393 (+) False LOC110535601
XM_036935328.1 mRNA downstream 434826 33908716 ~ 34154878 (+) False LOC110535601
TU1103506 other upstream 26180 33384043 ~ 33385527 (+) True LOC110536614
TU1100642 other upstream 2590455 30818838 ~ 30821252 (+) True G965838
TU1096773 other upstream 5161795 28249327 ~ 28249912 (+) True LOC110535556
TU1096685 other upstream 5182306 28227528 ~ 28229401 (+) True G962100
TU1096688 other upstream 5197223 28132621 ~ 28214484 (+) False LOC110535556
TU1104418 other downstream 129157 33603047 ~ 33603674 (+) True G969455
TU1104419 other downstream 130623 33604513 ~ 33604810 (+) True G969456
TU1104738 other downstream 320485 33794375 ~ 33795061 (+) True G969752
TU1105066 other downstream 689926 34163816 ~ 34170987 (+) True G970054
TU1105305 other downstream 705813 34179703 ~ 34180048 (+) True G970283

Expression Profile