RNA id: XM_036935336.1


Basic Information

Item Value
RNA id XM_036935336.1
length 3071
RNA type mRNA
GC content 0.53
exon number 20
gene id acad11
representative False

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 34449722 ~ 34515337 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCGAACATCGGTCAGTGCGTGCCATCAGCAAAACTGTGCATTTACCGGTCTGTGAGATGAGCTCAGTCACTGTTTTGTTTGCGCAAAGTTTGATCTGCAAAACACTGACTCCCACCTCCGTTGACCAAAACGAAACCATTCGACTTTCCATATTGTACGAGATTAGCTAATTCGTTCAATTTTACAATTTTGACAAATTATTAATCCACACTGAAATATGGAAGACCAAACAGCAACTCCTGTTCGGGAGCAGCACAGGTTCAACACGGTCAATCTTCAGCGATATCTGGCTGGAAAGACACGAGGGGTGTCCAACAACGACAGGTTCACTGTCAGACAATACAGTGCTGGACAATCCAACCCCACCTTCCTTATCCAGACCCCTTCTGACAGCTATGTCCTGAGAAAGAAACCACCGGGTATGCTTCTACCAGGGGCTCACAAGGTGGACAGGGAGTATCGAGTGCAGAAGGCCCTGTTCTCTGCTGGGTTCCCAGTACCCCAGCCACTGCTACACTGCACTGACGCAGAGGTGATCGGAACTGAGTTCTACCTGATGGAGCATGTACAGGGGCGTATATTCCAGGACCTGAGGCTCCCAGGGGTGAGTGCAGCGGAGAGGGCAGCCTTGTATGTGTCTGCAGTGGAGGTTCTGGCCCGTCTTCACTCCCTGGACCTAACCACCATGGACCTAGAGGGGTACGGGAGAGGGCCTGGCTACTGCAAGAGACAGGTGTCTACCTGGACAAAGCAATACAGAGCAGCTGCCCACAAAGAAATTCCCGTTATGGATAAGCTCTCTGATTGGCTGTTGAGCAACCTGCCCACCAATGACAATGAAGTGGCCCTTGTCCATGGGGACTTTCGAGTGGACAACCTGATTTTCCATCCTACTGAGGCTCGTGTGGTGGCTGTGTTGGACTGGGAGCTCTCCACCACGGGCCAGCCAATGGCAGACCTGGCCTACTTCCTGATGCCCAACTATTTGCCCAGTAGCCTCAGCCTCCTCAGCTGCATGGGCAGCCTGAGGGGTGTGGAAGGTATACCTTCTCCTGAGGACCTGATCTCCATCTACTGCCGGTGCCGAGAGATCCCATCTTCTCTGCATCAGCTCAACTTCTACCTGGCCCTCTCGGTCTTTAAGATGGCAGGGATCGCTCAGgGGATCTATGCACGCCACCTCCTGGGCAATGCCAGTGCTCCCAATGCTGCCCAGTTTGGCCAGAGTGTGGAGCCGTTGGCCCAGGTTGGGCTGCAGATTGCAGAGAACCCCTCCAGGTTGGGCCCTGCTGATGCCAGACTGTTCCTCCAGACTGCTAAAGGCCAGGCTGTCCACCAGCAGGTCACAGAGTTCATGAAACAACACGTGCTTCCTGCTCAGCAGGAAGTATCAGAGTACTACTCTAAACACGCCCACTCGCCCCAGAGATGGCACCCTCCCCAGGTGATAGAGGATTTGAAGgcgAAGGCCAGAGAGGCGGGGCTTTGGAACCTCTTCCTGCCGGCAGTAAGCGGTCTCAGTCAGCTAGACTACGCCCACATCGCAGAGGAAACGGGACGATGCCTCTACGCCCCCGACCTCTTCAACTGCCAGGCCCCTGACACGGGGAACATGGAGGTCCTCCACATGTTTGGTACtgaggagcagaagagagagtGGCTCCAGCCCCTGCTCAGTGGACAGATCCGCTCCTGCTTCTGTATGACAGAGCCTGATGTGGCCTCCAGTGACGCCACCAACATGGAGTGTACCCTTCAGAGGGACCAAGATCATTACGTCGTCCACGGCAGGAAGTGGTGGAGCAGTGGTGCTGGTAACCCAAAGTGCAAGGTGGCTATCGTGATGTGCAAGAGCAAGTCGAATAGCACTCGAAACAGCTCAGATCTATGCAGCTCTGGTTGTGAGGTGGTTTTGTGTTCCAGACACGGTCAGCACAGTATGATCCTGGTCCCACTGGACACCCCTGGTGTGAACGTGATCAGACCATTGACCGTATTTGGACAGGACGATGCCATTCACGGCGGACATTTTGAGATCCACTTTGACAACGTGCGTGTGCCTGCTTCCAACATTCTTTTGGGTGAGGGCCGAGGCTTCGAGATAGCCCAGGGTCGTCTTGGTCCTGGCAGACTGCACCACTGTATGAGGGCCGTAGGATCTGCTGAATGGGCACTGGAGCTGCTGTGCCAACGTGCTGCGCATAGACAAACCTTCGGCAAGAAACTCTACCAGCATGAGGTTGTGGCCCACTGGATAGCAGAGTGTCGCCTGGCAATAGACCAGACTCGCCTACTGACCCTGCATGCTGCTCACGCTCTGGACACACTGGGCAGCAGGAGAGCCCGGAAACAGATTGCCATGATCAAGGTGGTTGCTGGCAGGATGGTGTGTAAGGTTGTGGACACTGCCATCCAGGTGTATGGGGGTGCGGGTGTATCTGGAGACTTCCCCCTCGCTCAGATGTATGCGTACGCCAGGACTCTGCGCATAGCAGACGGGCCAGACGAGGTGCACATGTCGTCCATCGCCCATCTGGAGCTCAGGGACCAGATGAGAAAAGCCCAGGCCAAGCTGTGAGGTCTTGCAAAGGGGTTAACAGGATGGGTTAACACACAGGCAGCCCCCAGACAGACCGCAGGGTAGCGGAAGGGTTAATAGAGGTTTTAACACAGATTAAGAGTGCCGTGAAGGAGCTTCATCTGTCACGGGAGCTACGGCGATTGATTGACAGGCCAATCTCACCTACTAATCACTGTGGATGCCAATCATAGATCTCCACATACAGAGATTCTGAGATTTGCTTATCTGAAACATGATCATGATCAACTCTTGTTCTGCCTTAATGTGATTGTGGGGGAATAGCAGTCTACTGTATTATGGTATGAAGATCTGGTAGAGAAAATGTTGTGTCTGCTGGACTACAGGTGGCGCTAAcaaaatggggtattgtgtttattGATTCAATAGAATTTAGTAATTTATAACTAAAATGACATACACTGCCTTAATATGCTCATAAGATATGTAAAATAAAGATTTGGATATGTGGTAAATCGCCACATTTTTTGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1105442 lncRNA upstream 107087 34342269 ~ 34342635 (+) True G970414
TU1105367 lncRNA upstream 203041 34246324 ~ 34246681 (+) True G970340
TU1105362 lncRNA upstream 209827 34239686 ~ 34239895 (+) True G970335
TU1105350 lncRNA upstream 221514 34227689 ~ 34228208 (+) True G970323
TU1105330 lncRNA upstream 256522 34192616 ~ 34193200 (+) True G970303
TU1105517 lncRNA downstream 1120 34516457 ~ 34518178 (+) False G970489
TU1105518 lncRNA downstream 1120 34516457 ~ 34517772 (+) False G970489
TU1105519 lncRNA downstream 1120 34516457 ~ 34517772 (+) False G970489
TU1105522 lncRNA downstream 1120 34516457 ~ 34517446 (+) False G970489
TU1105525 lncRNA downstream 1120 34516457 ~ 34522340 (+) False G970489
LOC110535606 mRNA upstream 18923 34428058 ~ 34430799 (+) True LOC110535606
XM_021620704.2 mRNA upstream 22165 34312066 ~ 34427557 (+) False LOC110535604
XM_036935342.1 mRNA downstream 44004 34559341 ~ 34712610 (+) False LOC110535611
XM_036935344.1 mRNA downstream 44005 34559342 ~ 34712610 (+) False LOC110535611
XM_036935343.1 mRNA downstream 44007 34559344 ~ 34712610 (+) False LOC110535611
trnar-ccg-2 mRNA downstream 214259 34729596 ~ 34729668 (+) True trnar-ccg-2
trnar-ccg-3 mRNA downstream 215720 34731057 ~ 34731129 (+) True trnar-ccg-3
TU1105305 other upstream 269674 34179703 ~ 34180048 (+) True G970283
TU1105066 other upstream 278735 34163816 ~ 34170987 (+) True G970054
TU1104738 other upstream 654661 33794375 ~ 33795061 (+) True G969752
TU1104419 other upstream 844912 33604513 ~ 33604810 (+) True G969456
TU1104418 other upstream 846048 33603047 ~ 33603674 (+) True G969455
TU1105524 other downstream 2489 34517826 ~ 34522340 (+) True G970489
TU1107936 other downstream 1734636 36249973 ~ 36250586 (+) True G972725
TU1109131 other downstream 3026759 37542096 ~ 37543202 (+) True LOC110535658
TU1109202 other downstream 3135801 37651138 ~ 37679368 (+) True G973918
TU1109337 other downstream 3316184 37831521 ~ 37835335 (+) True lztfl1

Expression Profile