RNA id: TU1105560


Basic Information

Item Value
RNA id TU1105560
length 2181
lncRNA type sense_over
GC content 0.35
exon number 2
gene id LOC110535611
representative False

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 34559341 ~ 34713016 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCGTGACAACTCGCTGTCTTACTATCAAAAGAAGACGTCACTTCAGAGTCATTGTAGTACAGAAAATAAACCTGTCAGTCTTTTTTTCTAACTGTTTGCAAGAGTGTTGTAGGTGTTTGAACTAATGTACAAAGAAGATGTGAAAAAAACACGTGAAATACTTCTGTGGTACGTGTCCCTAAAGAGGCTAAACCATGTTTTATACTACTGTTTTACTTTCTCTCACCGATGAAATGTCATGATGAATTGTAGAGCAGTTGCAGAACCTGTTCAATGTTGACATTTAATTATTATTTCTGTGTAAAGACTCAAAAGTAATAATTTCCCTGAAACTAGCTAATAACAATCCTCATTCACTAAGATATGGTCTGATGTTTTTCAAATTTTAGAAAAGGAGATTACTTGAAAAAACATCTGGTGTCCTCTCCTGTTCCTCAGTTAAGAATTGTCATTAAGGTAGCAAGTGAACACACCTCAACCTTTTTTGAAGGAGGTGATTTTGTGATGACATAATTACTCTTGTGCTTAGTTACCATATTTGGAGAAAGTTTTGCTATATTGCTAGTAATGTAAtgaaacatttacatttaattGCATTTTCAAAATAATGAAGCATTTGTCACACAAATAGGCTACCTATCTGTAAAGCATTTATGAACCCAAAGAAGCCATGAATGAATTAAATCAACACGTGTTTCTTACCAATTAAAAACACCTGTCTATGAAAGTGTCACCATCTAAGCCGTtagtttttgttatttttatatttcatttatttcagctttgtgGCCTTTATTTGGCATAGATTCTGATTTGTCACCTGTGCTGTATGGCTCCAGTAATGAATTGTTAAATATCTAGTAAAGATGTAAACATAATGAAGCCTAATGGGCTGTATGACAAAATGCTATTGAAAACCATGATTTTATTACAAGCAAATTGAATTTTTAACTTTTCAAGGTTGTTATCATTTTCACTAAAACAAAGTGAGTGGAAAATGGCGTAAGCTTTCTCCCCCTCTGAAAGCTTTTCTCATCAGTTATGTCTGAAAGCGTGTCATGTTTCCATCTTCAAAGTGCTTTACATGACATGTGTGGCTGCATTAATTGTCTAAAATCGTATGATTTCAAAAGTTGATAAGGGTATTCATATTCATGATAAAATGGGGGATGCTATAAATAGTAGTTGATGCAGTGTGTGACACAACTCCAAAGAGTCTCGAGTGCTCGGCCTGTTTCTATCAAGCGTCTCATTGTAGGAGtactggtctaggatcagatcTTTCCTGTCCATGTTAACTGTATTCATTGTGATCTACAAATACAGGCCTTGCTCTTTATATTGAGAAAGTCAAAGTATTAATATAGAGGATATGAAATACAAGGTTGCGTAGGGTTCTGTTTGTGTCTACTGCTCGGTAATGACAGGTAAAATAGTATGACGTTTGCTTTGGTCCGTGGTGTTATGTGCAGCCTTTTTTTCAGGCCACAcataacaccctggaccagaacTAGTATAAAGTGTCATCTAGTTGTCCTTTGAGAACAGCTTATTCCCATACCTCTGGACTGCTGGGACTTCTGTTGTTTTTACCTGATATTATGATATTTGATTCTATTGGGTTCTATTTGAACACTGGTGGGCCCATATATTCATCCTATGATCGCTTTTTGCAGGTTTGGCAGATCGTTCCTGTATGTTGTCGTTgttcctggaggtgtgttgtgtatAAACGCATGTTAAATAGATGTACAAAATTCTCACGAGAAGCACAGCCAAGGGGTTCATCATTATCAATGTCCTGTATTtttatattgtaaaaaaaaaaaaaaaatgatctcacctcagaatttgtttttatatatatatatatatatatatatgtgtgtgtaaaaaaaaacggATATGACATATAAGATATAATTGCCCAATCATAAACTAGATCCTTCTGTGTTGTCTGTGGGAGACTGTGCAACCTAGCTGCCATCATGACGGAATGACTGCAGTGAAGTTCACTATGCACAGCTTTGATGGACTATTCACTCATGTGCAATCGTTTGTTGCAATCCATATCATGTGTTGGGGAAAAATATAAAGAAGCAAAAAATGTATTCTCTATGTGCCAAATTGCTCTGAATGAGAAAAAGTGTAATACTAAATGAATAAAAGTTTGCATACCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1105601 lncRNA upstream 91443 34618995 ~ 34619259 (+) True G970557
TU1105596 lncRNA upstream 96941 34613557 ~ 34613761 (+) True G970552
TU1105593 lncRNA upstream 101988 34608477 ~ 34608714 (+) True G970549
TU1105580 lncRNA upstream 119823 34590673 ~ 34590879 (+) True G970536
TU1105578 lncRNA upstream 121893 34588533 ~ 34588809 (+) True G970534
TU1106007 lncRNA downstream 3340 34716356 ~ 34716700 (+) True G970934
TU1106009 lncRNA downstream 5920 34718936 ~ 34719194 (+) True G970936
TU1106015 lncRNA downstream 12614 34725630 ~ 34725881 (+) True G970942
TU1106026 lncRNA downstream 40273 34753289 ~ 34764082 (+) True G970951
TU1106044 lncRNA downstream 60141 34773157 ~ 34773366 (+) True G970969
XM_036935336.1 mRNA upstream 195365 34449722 ~ 34515337 (+) False acad11
XM_036935337.1 mRNA upstream 195365 34449723 ~ 34515337 (+) True acad11
LOC110535606 mRNA upstream 279903 34428058 ~ 34430799 (+) True LOC110535606
XM_021620706.2 mRNA upstream 283145 34358512 ~ 34427557 (+) False LOC110535604
trnar-ccg-2 mRNA downstream 16580 34729596 ~ 34729668 (+) True trnar-ccg-2
trnar-ccg-3 mRNA downstream 18041 34731057 ~ 34731129 (+) True trnar-ccg-3
trnar-ccg-4 mRNA downstream 19508 34732524 ~ 34732596 (+) True trnar-ccg-4
trnar-ccg-5 mRNA downstream 20975 34733991 ~ 34734063 (+) True trnar-ccg-5
trnar-ccg-6 mRNA downstream 22460 34735476 ~ 34735548 (+) True trnar-ccg-6
TU1105524 other upstream 188362 34517826 ~ 34522340 (+) True G970489
TU1105305 other upstream 530654 34179703 ~ 34180048 (+) True G970283
TU1105066 other upstream 539715 34163816 ~ 34170987 (+) True G970054
TU1104738 other upstream 915641 33794375 ~ 33795061 (+) True G969752
TU1104419 other upstream 1105892 33604513 ~ 33604810 (+) True G969456
TU1107936 other downstream 1536957 36249973 ~ 36250586 (+) True G972725
TU1109131 other downstream 2829080 37542096 ~ 37543202 (+) True LOC110535658
TU1109202 other downstream 2938122 37651138 ~ 37679368 (+) True G973918
TU1109337 other downstream 3118505 37831521 ~ 37835335 (+) True lztfl1
TU1109354 other downstream 3307433 38020449 ~ 38038711 (+) False LOC110535015

Expression Profile