RNA id: trnar-ccg-4


Basic Information

Item Value
RNA id trnar-ccg-4
length 73
RNA type mRNA
GC content 0.58
exon number 1
gene id trnar-ccg-4
representative True

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 34732524 ~ 34732596 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GatccagtggcctaatggataaggcatcaGCCTCCGGAGCTggggattgtgggttcaagtcccacctGGGTCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1106015 lncRNA upstream 6643 34725630 ~ 34725881 (+) True G970942
TU1106009 lncRNA upstream 13330 34718936 ~ 34719194 (+) True G970936
TU1106007 lncRNA upstream 15824 34716356 ~ 34716700 (+) True G970934
TU1105560 lncRNA upstream 19508 34710702 ~ 34713016 (+) False LOC110535611
TU1106026 lncRNA downstream 20693 34753289 ~ 34764082 (+) True G970951
TU1106044 lncRNA downstream 40561 34773157 ~ 34773366 (+) True G970969
TU1106097 lncRNA downstream 112641 34845237 ~ 34845761 (+) True G971016
TU1106383 lncRNA downstream 279235 35011831 ~ 35016554 (+) True G971261
TU1106513 lncRNA downstream 468468 35201064 ~ 35201384 (+) True G971385
trnar-ccg-3 mRNA upstream 1395 34731057 ~ 34731129 (+) True trnar-ccg-3
trnar-ccg-2 mRNA upstream 2856 34729596 ~ 34729668 (+) True trnar-ccg-2
XM_036935342.1 mRNA upstream 19914 34559341 ~ 34712610 (+) False LOC110535611
XM_036935344.1 mRNA upstream 19914 34559342 ~ 34712610 (+) False LOC110535611
XM_036935343.1 mRNA upstream 19914 34559344 ~ 34712610 (+) False LOC110535611
trnar-ccg-5 mRNA downstream 1395 34733991 ~ 34734063 (+) True trnar-ccg-5
trnar-ccg-6 mRNA downstream 2880 34735476 ~ 34735548 (+) True trnar-ccg-6
trnar-ccg-7 mRNA downstream 4358 34736954 ~ 34737026 (+) True trnar-ccg-7
trnar-ccg-8 mRNA downstream 5836 34738432 ~ 34738504 (+) True trnar-ccg-8
trnar-ccg-9 mRNA downstream 7303 34739899 ~ 34739971 (+) True trnar-ccg-9
TU1105524 other upstream 210184 34517826 ~ 34522340 (+) True G970489
TU1105305 other upstream 552476 34179703 ~ 34180048 (+) True G970283
TU1105066 other upstream 561537 34163816 ~ 34170987 (+) True G970054
TU1104738 other upstream 937463 33794375 ~ 33795061 (+) True G969752
TU1104419 other upstream 1127714 33604513 ~ 33604810 (+) True G969456
TU1107936 other downstream 1517377 36249973 ~ 36250586 (+) True G972725
TU1109131 other downstream 2809500 37542096 ~ 37543202 (+) True LOC110535658
TU1109202 other downstream 2918542 37651138 ~ 37679368 (+) True G973918
TU1109337 other downstream 3098925 37831521 ~ 37835335 (+) True lztfl1
TU1109354 other downstream 3287853 38020449 ~ 38038711 (+) False LOC110535015