RNA id: trnar-ccg-5


Basic Information

Item Value
RNA id trnar-ccg-5
length 73
RNA type mRNA
GC content 0.58
exon number 1
gene id trnar-ccg-5
representative True

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 34733991 ~ 34734063 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GatccagtggcctaatggataaggcatcaGCCTCCGGAGCTggggattgtgggttcaagtcccacctGGGTCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1106015 lncRNA upstream 8110 34725630 ~ 34725881 (+) True G970942
TU1106009 lncRNA upstream 14797 34718936 ~ 34719194 (+) True G970936
TU1106007 lncRNA upstream 17291 34716356 ~ 34716700 (+) True G970934
TU1105560 lncRNA upstream 20975 34710702 ~ 34713016 (+) False LOC110535611
TU1106026 lncRNA downstream 19226 34753289 ~ 34764082 (+) True G970951
TU1106044 lncRNA downstream 39094 34773157 ~ 34773366 (+) True G970969
TU1106097 lncRNA downstream 111174 34845237 ~ 34845761 (+) True G971016
TU1106383 lncRNA downstream 277768 35011831 ~ 35016554 (+) True G971261
TU1106513 lncRNA downstream 467001 35201064 ~ 35201384 (+) True G971385
trnar-ccg-4 mRNA upstream 1395 34732524 ~ 34732596 (+) True trnar-ccg-4
trnar-ccg-3 mRNA upstream 2862 34731057 ~ 34731129 (+) True trnar-ccg-3
trnar-ccg-2 mRNA upstream 4323 34729596 ~ 34729668 (+) True trnar-ccg-2
XM_036935342.1 mRNA upstream 21381 34559341 ~ 34712610 (+) False LOC110535611
trnar-ccg-6 mRNA downstream 1413 34735476 ~ 34735548 (+) True trnar-ccg-6
trnar-ccg-7 mRNA downstream 2891 34736954 ~ 34737026 (+) True trnar-ccg-7
trnar-ccg-8 mRNA downstream 4369 34738432 ~ 34738504 (+) True trnar-ccg-8
trnar-ccg-9 mRNA downstream 5836 34739899 ~ 34739971 (+) True trnar-ccg-9
trnar-ccg-10 mRNA downstream 7321 34741384 ~ 34741456 (+) True trnar-ccg-10
TU1105524 other upstream 211651 34517826 ~ 34522340 (+) True G970489
TU1105305 other upstream 553943 34179703 ~ 34180048 (+) True G970283
TU1105066 other upstream 563004 34163816 ~ 34170987 (+) True G970054
TU1104738 other upstream 938930 33794375 ~ 33795061 (+) True G969752
TU1104419 other upstream 1129181 33604513 ~ 33604810 (+) True G969456
TU1107936 other downstream 1515910 36249973 ~ 36250586 (+) True G972725
TU1109131 other downstream 2808033 37542096 ~ 37543202 (+) True LOC110535658
TU1109202 other downstream 2917075 37651138 ~ 37679368 (+) True G973918
TU1109337 other downstream 3097458 37831521 ~ 37835335 (+) True lztfl1
TU1109354 other downstream 3286386 38020449 ~ 38038711 (+) False LOC110535015