RNA id: trnar-ccg-8


Basic Information

Item Value
RNA id trnar-ccg-8
length 73
RNA type mRNA
GC content 0.58
exon number 1
gene id trnar-ccg-8
representative True

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 34738432 ~ 34738504 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GatccagtggcctaatggataaggcatcaGCCTCCGGAGCTggggattgtgggttcaagtcccacctGGGTCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1106015 lncRNA upstream 12551 34725630 ~ 34725881 (+) True G970942
TU1106009 lncRNA upstream 19238 34718936 ~ 34719194 (+) True G970936
TU1106007 lncRNA upstream 21732 34716356 ~ 34716700 (+) True G970934
TU1105560 lncRNA upstream 25416 34710702 ~ 34713016 (+) False LOC110535611
TU1106026 lncRNA downstream 14785 34753289 ~ 34764082 (+) True G970951
TU1106044 lncRNA downstream 34653 34773157 ~ 34773366 (+) True G970969
TU1106097 lncRNA downstream 106733 34845237 ~ 34845761 (+) True G971016
TU1106383 lncRNA downstream 273327 35011831 ~ 35016554 (+) True G971261
TU1106513 lncRNA downstream 462560 35201064 ~ 35201384 (+) True G971385
trnar-ccg-7 mRNA upstream 1406 34736954 ~ 34737026 (+) True trnar-ccg-7
trnar-ccg-6 mRNA upstream 2884 34735476 ~ 34735548 (+) True trnar-ccg-6
trnar-ccg-5 mRNA upstream 4369 34733991 ~ 34734063 (+) True trnar-ccg-5
trnar-ccg-4 mRNA upstream 5836 34732524 ~ 34732596 (+) True trnar-ccg-4
trnar-ccg-3 mRNA upstream 7303 34731057 ~ 34731129 (+) True trnar-ccg-3
trnar-ccg-9 mRNA downstream 1395 34739899 ~ 34739971 (+) True trnar-ccg-9
trnar-ccg-10 mRNA downstream 2880 34741384 ~ 34741456 (+) True trnar-ccg-10
trnar-ccg-11 mRNA downstream 4358 34742862 ~ 34742934 (+) True trnar-ccg-11
trnar-ccg-12 mRNA downstream 5836 34744340 ~ 34744412 (+) True trnar-ccg-12
trnar-ccg-13 mRNA downstream 7310 34745814 ~ 34745886 (+) True trnar-ccg-13
TU1105524 other upstream 216092 34517826 ~ 34522340 (+) True G970489
TU1105305 other upstream 558384 34179703 ~ 34180048 (+) True G970283
TU1105066 other upstream 567445 34163816 ~ 34170987 (+) True G970054
TU1104738 other upstream 943371 33794375 ~ 33795061 (+) True G969752
TU1104419 other upstream 1133622 33604513 ~ 33604810 (+) True G969456
TU1107936 other downstream 1511469 36249973 ~ 36250586 (+) True G972725
TU1109131 other downstream 2803592 37542096 ~ 37543202 (+) True LOC110535658
TU1109202 other downstream 2912634 37651138 ~ 37679368 (+) True G973918
TU1109337 other downstream 3093017 37831521 ~ 37835335 (+) True lztfl1
TU1109354 other downstream 3281945 38020449 ~ 38038711 (+) False LOC110535015