RNA id: trnar-ccg-21


Basic Information

Item Value
RNA id trnar-ccg-21
length 73
RNA type mRNA
GC content 0.56
exon number 1
gene id trnar-ccg-21
representative True

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 34762005 ~ 34762077 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GATctagtggcctaatggataaggcatcaGCCTCCGGAGCTggggattgtgggttcaagtcccacctGGGTCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1106015 lncRNA upstream 36124 34725630 ~ 34725881 (+) True G970942
TU1106009 lncRNA upstream 42811 34718936 ~ 34719194 (+) True G970936
TU1106007 lncRNA upstream 45305 34716356 ~ 34716700 (+) True G970934
TU1105560 lncRNA upstream 48989 34710702 ~ 34713016 (+) False LOC110535611
TU1106044 lncRNA downstream 11080 34773157 ~ 34773366 (+) True G970969
TU1106097 lncRNA downstream 83160 34845237 ~ 34845761 (+) True G971016
TU1106383 lncRNA downstream 249754 35011831 ~ 35016554 (+) True G971261
TU1106513 lncRNA downstream 438987 35201064 ~ 35201384 (+) True G971385
TU1106618 lncRNA downstream 574042 35336119 ~ 35336343 (+) True G971479
trnar-ccg-20 mRNA upstream 1411 34760522 ~ 34760594 (+) True trnar-ccg-20
trnar-ccg-19 mRNA upstream 2896 34759037 ~ 34759109 (+) True trnar-ccg-19
trnar-ccg-18 mRNA upstream 4362 34757571 ~ 34757643 (+) True trnar-ccg-18
trnar-ccg-17 mRNA upstream 7289 34754644 ~ 34754716 (+) True trnar-ccg-17
trnar-ccg-16 mRNA upstream 8766 34753167 ~ 34753239 (+) True trnar-ccg-16
trnar-ccg-22 mRNA downstream 1411 34763488 ~ 34763560 (+) True trnar-ccg-22
trnar-ccg-23 mRNA downstream 2882 34764959 ~ 34765031 (+) True trnar-ccg-23
trnar-ccg-24 mRNA downstream 4367 34766444 ~ 34766516 (+) True trnar-ccg-24
trnar-ccg-25 mRNA downstream 5844 34767921 ~ 34767993 (+) True trnar-ccg-25
XM_036935346.1 mRNA downstream 20792 34782869 ~ 34785397 (+) False LOC110535615
TU1105524 other upstream 239665 34517826 ~ 34522340 (+) True G970489
TU1105305 other upstream 581957 34179703 ~ 34180048 (+) True G970283
TU1105066 other upstream 591018 34163816 ~ 34170987 (+) True G970054
TU1104738 other upstream 966944 33794375 ~ 33795061 (+) True G969752
TU1104419 other upstream 1157195 33604513 ~ 33604810 (+) True G969456
TU1107936 other downstream 1487896 36249973 ~ 36250586 (+) True G972725
TU1109131 other downstream 2780019 37542096 ~ 37543202 (+) True LOC110535658
TU1109202 other downstream 2889061 37651138 ~ 37679368 (+) True G973918
TU1109337 other downstream 3069444 37831521 ~ 37835335 (+) True lztfl1
TU1109354 other downstream 3258372 38020449 ~ 38038711 (+) False LOC110535015