RNA id: XM_021619861.2


Basic Information

Item Value
RNA id XM_021619861.2
length 3820
RNA type mRNA
GC content 0.40
exon number 4
gene id adcyap1
representative False

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 35595222 ~ 35601608 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGAATTAAAAAAAAGCCGATGCAAGCAGGTCTTCAGAACAAAAAGTTTCCTCTGTGAAGACAAACGTGTGGGCTCTTTCTCCTGGGGTTGTGTGCATACAGAGATCCGATAATCGCGTTTTATGTGTGAGCGCACGGAGGGTTGGACACATTAAAGGAGCATCAGGAGGCGGCAGAGACGCTTTACAGACGAAgcaagaaaagagagaaagggagagagagagattatctcACTCTCCCAGTCGCAGTCGCAACCGGATCACATCCAGCTTGTCTCTCCACACGGTAATAGcaggacaatgtcTAGTAAAGCGACTTTAGCCTTACTCATCTATGGAATCATAATGCACTACAGCATCCACTGCTCACCTCTCGGGCTAAGCTATCCTAACCTTAGACTTGAAAATGAGGTTTATGACGAGGATGGAAATTCGTTACCGGACTTGGCTTTTGACGGTGATCAAATTGCTATAAGAAGTCCCCCATCTGTGGCGGACGACGTGTACACTTTATACTACCCACCGGAGAAAAGTGGAGGGAGCACCATGGAAGACGACTCAGAGCCTCTGTCAAAGCGACACTCGGATGGGATCTTCACAGACAGCTACAGCCGCTACCGAAAGCAAATGGCAGTCAAGAAATACCTGGCGGCAGTCCTTGGGAAAAGGTATAGACAGAGATATAGAAGCAAAGGACGCCGGCTAGCGTATTTGTAGCGTTGCTAAACCAAACTACCATGTGTGTACAGCCCAGATCAAGTCATTTTGAGAAAACTGAACAATCGGTGGATCGCTCTTGTGTTCTTTAAACATGTATTTATGTATGAAGTAAAGCCATTAAAATTAATATTTTGATAATAATATTGTTTTTCTTTTGTACTTAAGCACTTGAGAACGCGCAGATCTACTTTGTGGACCAATCCTTTTGTTCAACCTAAATATagcctatatttatttatttttagaccTACGTAGACATGAAGATGAAATGATGTGCACATGATCAATATGCTCTTTACCCTGTCTTTTAAAGATTTAAATCTAGATATGAATGCGACGGAAATAAATAGTTTAAAAGACAGTCAATGTATTGAATGTTACTTTGTGGCAACTGAAATTAAGAGCTCAGTGTCTTTATTTACAACAGCCCTGAAGACTTAGGTTTTCACCATATTCTACAAGACATAGACTTTGATGCCCTACCGGATGGGGATGAGTTTGAGGCTATTTTTGGAGACTGGCTGAAACAGTTCTCTCCCGAATTTCCGGTGAGTTCCAGGCTCTTTCCCGAGGCCTTGTCTTGAGGGATGTCTCTTGTCCCTCCCACTTTTTCTCACCTTACCCTGTGACCTTACCCTCCAGATATGAAATACAACCCAGTCTTCTTCTTTTCTCATTTGGGCTCCTGTCTCTCTTGAGATGCTGTACAACTGTACCTATATTCACACCTATACTGCATGCAGTATATGTATGAACGTGAATATAGATGCATAGATATGTTTTACACATTGAATGTTTATGGATATACTGTAAATCCTTTACAATTCCCCATAAATATCCTATGGGAGGCTGTAGGATAATAATGTGACTGCTAAACAGTATTATAAATAAATTGTTTATTTAAGGCCAAAACAGACATGACCCAACAGGCTCTAGAATCCTTATATATGGCAGTAATTCAAGTACTAAAGTGTTAGAATGACCCCTATGACCTCTATGACCCTCGTAAGATGAGGACCAGAGTGCGTTTGAGCTTTTtcctttccttcctcttcttcttcttctttttcttcttcagtGTTAAAGAAAATGAGCTTACATTTTTGAACTTTGTGCAAAGTATCTATCTTGTGTTCCTCTGTAATGGTATACATGTGTTTGAAAAGCTCTTGAAAACCTGGAATGCTGGTAAAGGTTTTCCATTTGTCTCTTCTCGCCACATAAGAAGCATCATGAACGTAGAATGGTCGTCGGACTCAAAAAGAAAGTCCAATAAGAAAACGGAGACCATTTCCACTGACATTATACTTTTTATGTGGCTTCACTTAATTTCAAtgtgttttttgttatttttcatgAGGAACATTTCAGAGGCAATTTGAAGACGCGTTGCACCTTCCTGGTCTACTGTGCTTTCCCCTATCTTGTCATGTGAACCAATGTAAAGCTAGATCGCATGATTAAAGTAATTGCACTAGCCACCAAATCTGTGCAAACTACTGCAATTGGATGGTTTTCTTTGCTCACTGATTgacatatatacatatgtgttttttttctggatgttgttttgtttttgttctcTCCCCAACATTACTGCACAAAGTGTTTGATTGAACGTCTCACCCCTGTCTTCTGTATAGGAAAGCTCAGATGAATGTACTGCAGGGGAGAAGCTTTCAGAAAGAGTCGCGGTCATGTTTTCTTTTTAGTCTCTTCTCAATGGGACTTGAGACAAGATTCTGTTACATTCCAATGTATTATATGCCAAAAACAATGCTTGAATGATTGTTATTTTGAATAATCCTTACCTATCCTGGCAGCCCAAGCACAGCACAGTCAAACTTCTACCTAATCAACAGTTAGACAAAGCCTTGAACGTACTTCACCGTGCCTGTACTATTCTGAACACCACCAATTCCAAATTAGCTTCTCAGTTTACTTGCCTCTTTTTTCTTGATGTAAGTGATCACAAGATGAGAAGCAGAGAAAACCTGTTCAGTGCTAGATAGACCCAAGTacgagagggggagtgggaggaagagagaggaatgaggatAGTGGGTGCGAGAGAGGAGAacaaagagaaagagggacacagagaaagaaggagagtcCATGACCAATCGATTCGAGAGAAAACAGGGTGATTTTTTGGCAGTGAAAGGAATTTACCAGACAAAGGTTTCCACACCTCATTAGAAGAACTTGGCCTATCATCTCACTTGTACCCATCAGTGACAGATAGACAGAACAAGCCACACTTCTTCTCACTAGAGACATGATTGGGTTCGCTACTTCTGTTATTAGCCATCCCATTTTTCGACACCATGAAAAACAGTTAATAAGATAATGAAAAATGTAGCTTCTGAATCCGTACAGTATACTTCCATTTCCTGGCCCCAAGACATCATATTCACACTTCCCTAAATTGCAAGGAGATCTAACTCCAGTAGTGGACCAGGCAGATTCTACAGACACTGTAGGTTAGGTTTGAGCTTTGTGACACTTAGCAGTAGGGCAAAGTTCTTCgatctgtgcctgtgtgtatgaAATCAATCTTTCTTTAATTCTGCATTCCCCTCCAGGCTTTGTGACGCAGAATGCAGCTTGCGGCTGTGGTGCCTTGCTTCGACTTTAAAATCGCCACGAATCACAGATGGCTATTTAGTAGCCCTACAATGCTGCACATCATCAGCTTACATTTCACCATTtggttgttgtttttgtgttgcGCAGACATTTGATTGGATCTTTAGTGCCATTAGGTGTAGTCTCCGAGCACTCTTGCTCACAATCATTTCTTttgacaattattattattattatttttttgagcaCTTAGACTTAGAGATTTGTGGTAGATAGTTGCAAGCATCATGATTACCCTCTTTCCATAATGTGTATCATTTTGAAAGCGCCAACAGCCTTACTAAACGTGAAGATTTAActtagaatatatatatttattgtgTAGTAAATTGATATTAGAGAGTACTAttataatgagaaaaaaaatggcGATCCACAAGGGTTAAGTctataaatgtttaaaaaaaacggTGTTGTAAGATTTGTATGAATaaatttttgtaaacaaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1107033 lncRNA upstream 9737 35585288 ~ 35585489 (+) True G971872
TU1106958 lncRNA upstream 141521 35431920 ~ 35453705 (+) True G971805
TU1106900 lncRNA upstream 227572 35362390 ~ 35367654 (+) True G971748
TU1106898 lncRNA upstream 234929 35360096 ~ 35360297 (+) True G971746
TU1106892 lncRNA upstream 238369 35356504 ~ 35356857 (+) True G971740
TU1107203 lncRNA downstream 29592 35631200 ~ 35631579 (+) True G972024
TU1107204 lncRNA downstream 31907 35633515 ~ 35633755 (+) True G972025
TU1107205 lncRNA downstream 33307 35634915 ~ 35635551 (+) True G972026
TU1107218 lncRNA downstream 54802 35656410 ~ 35656619 (+) True G972039
TU1107247 lncRNA downstream 73804 35675412 ~ 35675659 (+) True G972068
XM_021620728.2 mRNA upstream 73643 35514475 ~ 35521583 (+) False LOC110535619
XM_021620729.2 mRNA upstream 73643 35514475 ~ 35521583 (+) True LOC110535619
XM_021620727.2 mRNA upstream 152990 35428021 ~ 35442236 (+) True LOC110535618
XM_021620720.2 mRNA upstream 805480 34782869 ~ 34789746 (+) True LOC110535615
XM_036935345.1 mRNA upstream 809317 34782869 ~ 34785909 (+) False LOC110535615
LOC110535011 mRNA downstream 118481 35720089 ~ 35866083 (+) True LOC110535011
XM_021620734.2 mRNA downstream 266657 35868265 ~ 35893791 (+) False LOC110535623
XM_021620733.2 mRNA downstream 266658 35868266 ~ 35893791 (+) False LOC110535623
XR_002475284.2 mRNA downstream 342106 35943714 ~ 35950398 (+) False LOC110535625
XR_005034620.1 mRNA downstream 342106 35943714 ~ 35950398 (+) True LOC110535625
TU1105524 other upstream 1072886 34517826 ~ 34522340 (+) True G970489
TU1105305 other upstream 1415178 34179703 ~ 34180048 (+) True G970283
TU1105066 other upstream 1424239 34163816 ~ 34170987 (+) True G970054
TU1104738 other upstream 1800165 33794375 ~ 33795061 (+) True G969752
TU1104419 other upstream 1990416 33604513 ~ 33604810 (+) True G969456
TU1107936 other downstream 648365 36249973 ~ 36250586 (+) True G972725
TU1109131 other downstream 1940488 37542096 ~ 37543202 (+) True LOC110535658
TU1109202 other downstream 2049530 37651138 ~ 37679368 (+) True G973918
TU1109337 other downstream 2229913 37831521 ~ 37835335 (+) True lztfl1
TU1109354 other downstream 2418841 38020449 ~ 38038711 (+) False LOC110535015

Expression Profile