RNA id: XM_021620734.2


Basic Information

Item Value
RNA id XM_021620734.2
length 4670
RNA type mRNA
GC content 0.52
exon number 8
gene id LOC110535623
representative False

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 35868265 ~ 35893791 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CACACTACAGGCACCCTGGAAGTAAGTTTGCATGATCAGCCTTTCGAGCTGCTGCTGGGAGAGGGAACAAACGTCTAACCTCAATGCTTGAAATACATGTTTAATATTTGTTTACTTGTCGTTTATTTTCGTTGTCTAAAAATGAAGTGCCTTCCCACCGGATTCATCCTTAAAAGTGCCTTATTTCCCTTATTGCTCACCTTTCAATTGATCTATGGAACGCGGTCCCGGTATAACCAGGGGTATAACATGTTCCAGGGAAGCGCATACTCTGGCTCAGAACAAAGACAAAGGAATAAAAACTGGTGCGCATACGTTGTGCACAAGAACGTGAGCTGTGCGGTCGTGGGGGGTATGGAGAGCTTTGTGCAGCCGGAGTCAGCGCCTTGCCCGAAGCATCAGCCCAACTGCGCGCAACAAGTGATGTATCGGACCCAATTCCGCCCCATGTACAAGGTTGGCTATaagctggtgacagagctggagtGGAGGTGCTGTCCAGGCCACCAGGGTCAAGACTGCAAAGACTTGAAAGGCATCCCATCCAGTCAGACAGTGCTGGGGCCTCGGCCCACCCTGCCTCCTGCCCCAGAGACACAGGATCCGGGACAGCAGGCATGGGGTCAGAGTGGCCACCCCTGGGGGGCAGGGAGGCAGCCAGGAAGTCAGACAGGCCAAGGTCCGGCGGGGGGCCAGGGAGGGAGTCAGGCGACACAGCAGCTGGAGGAGGTGGTACAGCGTCTGTCCCAGCAGATTCTAGACATGCAGGCAGCCATGACCAGCCTGTCGGCCAACCTGAGGGTGAACCTGCAGGAGGACGCCAGCAAGATGCTGGTCACGATGCTCAACGTCTTGCGGCAGCCAGACAGCGTGCGTGGGGAGCAGCAGAGCATGCTGCTGCAGGGCCTTTCCCTGGAAAAAGAATACAACACGATGGACATTGACAAGTTCACGAGCAAGATCAACCACCTCACCGACACCATAAACACCAAGAGCAATGTACTGGACGACCTCCAAGCCAGAGTCAACCACCATGACGGACAGCTCCACCTGCTAATGGAGGCCAGCCCggcctcaccccctccctctcctccggcCAATGATGCGACCCTGCGCGCCTATGTGGACACAAAGTTCCACGCCCTGAAGGACGAGATGATGGAGGGCATGGAGATCAAGATGGCAGACCTGAAGAACTCATGTGACTATAAGATCCTGTCGGTGCAGGAGCAGTGTGCGGGCCAGGAGAACAGCTACCTGAGCCTGACCGAGCTCCTCGAGTCCAAGGAGATGAACCTCCGCAAGGAGATCCAGGACTTCAAGAACCAGCTGCCTAATTCACAGAGGGGAGACGGAACCCCTCCAGGGGTGGAGGAGCTGCGAAAGGAGCTGTTCCGGGTCGCTGAGGCCCAGCtgatcctccagtccagcctaGAGAAGAAGTCCAAGCCTGACCCACTCCTGCCCCGTGTGGAAGAGCTGGAGGCCCGTCTCAACATGTCGGAGAGGAGCGAGAAGGTGCGCAGCCTCTTCCTGGAGGAGaagctgaggagagagggggcgGAGGGGGCCGCAGACCTGAAGAAGGCTATGGAGGACAGGATGAGCTCCATGGAAGACCGGGTCACCACTATACTGGTGGAGATAAGCAGCCCTGTATCTGGGGTGCAGACTGCGCTAGAGGCACTGCAGAGTACTCAGGCTCTGGAGGACAGACTCAATTCCCTAGAACAGCTGTGCTCCACAGAGTGCAAGTCTGACCAACCGGCCATAGAGCGCATTCAACAGAACCTCCGGGTCTACAGAACTAGCCTAGACACAATTCAGTCTAACATCAATGGGCATTCAGCTAGTCTTGCAGACATGGAAGAGTTTGTCCAAGGGCAGCTCCTGAACCATACCGCCAGTCTTACAGATGTGCAGGAAGAACTAGGAGCTCTTAAAGAACGTATTGGAGGACAGCAGGGTTCTCTGTCAGCCTTGGGTCTCTCTCTTAGCCAGCAGTCCCTGGAGCTACAGGGGCAGCTTCTGAACCACAGTGCCAGCCTTACAGGCGTGGAAGAAGTGCTAGGAGCTCTCAGTGGGCGTATGGGAGTACAGAAGGGCTCTCTGTCAGACTTGGGTATCTCTCTCAGTGATAATCTTAAAGATGTGCAGGAAGAGCTGGGAGCTCTTAGTAGGCGTATGGGAGAGCAGGAGGGTTCTCTGTCGGCCCTGGGTCTCTCTCTCAGCCAGCAGTCCCTGGAGCTCCAGCAACTGAACACCTGTTGCCTGAGCAGTGCAGGACCAGCCCAGGAGGCCAAGGACCTGCTACAACTCCACCTGACccagagagaggagctgagggcCAGGCTGGAGGAGCTGGACAAGGAGGTGAAGGCTGAGGCAGACCACTGCAGGAACAGGACCGAGGGCATAGCTCTGGACGTTGCCAGCATGGACAGCCGGGTTACCAGCTTGGAGAACATGTGTGGTAGGCTGGAACCCATCTCCAGCAGCCTGCACAGGATCAAGGAAGGGCTGAACAAGCATGTGACCGGCTTGTGGAACTGCATCAACCAGATCAATGGCACCTTGCAAGCCCACACCAAGGACATCAGAGGACTGAAGGGAACATACCAGAACCTCCAGGACCACTACTCAGGTGTTCATGTAGGTGTGGAGGAGTCTGGTAATCCCACCGAGACGAAGCTTGTCCCTCAGGGCCCTGTCCTACCCGTTGGGCCAATACCAGATGGGGCCCTACTACATATGATGGAGACTGGGGAGGCAGGAGCCCCCGGAATCACCATCTCTTCCAAACCGCCCAAAGGGGCCGACGGCAGCATGTCCACCCTCAAGGGCTTCGCTGGAGCCCCAGCCTCCCCACCCTCTACAGGGTATTTAAAGCCTAATATGCCAGTGGTTTCTGGTGAGCGGGTGTCCTTCTCGGCTGGTCTCAACCGCTTGCCCTTCCCTGGGGAGGTGGGTATCATCCGCTTCAACAAGGTGTTGGTAAACGATGGGGGACACTATGACCCTTACACAGGCATCTTTCACGTTCCCATGGAGGGCCGCTACCTGCTGAGTGCCGTGCTGACAGCCCAGAGAGGTGCCAAGGTGGAGGCGATGTTCTCTGTGTCCAACCGCAGCATCCAGAGGCTGGACACGGCCGGTTACCTGCCTGATAATGGTGGAGGAGGTGGGGCTGGCTCCACCAGCTGTGACTGCGGAGGCTCTGCCTCCCTGAGCCTGGTTCTCACTCTGATGCGTGGGGACAGGGCAGGTTTAGTCATGACCGCAGGCAAACTTGCCATCTCGGAGAACACAGAGGTCCTCTCAACATTTAGCGCCGTGcttctctaccccaccccctcaaaaAAATAGCTGCCATGTTATAGACAAAGTTAcccccttaaaaaaaaaaaagagaacccCACCAATGATATTGCTTTATGTAGctccaccctcaaaacaacacCCATTCTACTTTAGATGTATGCCTCGTTCACGTGTTAgccggaactaggaaactcaaaTTTGACTTGCTAATTGATTGTAGTTCTACACGTGTCGtgttcaaccagttagcaagaTGGTCATttctgagtttcctagttcccGACAAGCACGTGAACGTGGCAGTAGTATGCCCAACATTGCATGCCTTCCAGGTATTTTAGTATAACAGGTAGATTGCTTTAACGTACTATCATATGACAGAGCTTTCATACAAAAAGAGATCAAATATAAGTATCAAATATTTGATCATAGGATTCTTATGGAGGGGATGGGGCAGGCTACTGCCATTTATGGAGTATTAACATTTAGTGATTGATTATATTTGAAATGTTTGAATGTGTGCTTGTGTTGATGCGTTCAATTTGTTGTAGTTATTTTGAAATGACTATTTTATGAGAACCATCaattataatactgtacatacaggtaactgacaaattAAAAGAAACCAAAGTTTCTTAATAGGGCGTGGGGCCAccacagcttcaatgcgccttggcatagattctacaagtgtctggaactctattggagggacgcgacaccattcttccacgagaaattccatcatttggggTTTTGTTAATGGTGGTGGAAAACTTTCAGGCACCGgcccagaatctcccataagtgttaaattgggttgatctggtgactgagaccacaatggcatatggtttacattgttttcatgcgcatcaaaccattcagtgaccacttgtggatgggggcattgtcgtGGTAGCCCCAAAAAATTGCTAAAATAATGTAGAAAATGCCCAgcattttatacatgaccctacaCATGATGGGATGTtgattgcttaattaactcagtgttccacctgtgtggaagcaccagctttcaatatacttttgtATCCCTCATTCATCAAGCGTTTCCATTGTTTTGGTAGTTACCTGTAGCATCGTTAGAGGAACTAACGTTAAACAAATAAGCTGGTCATTTTTCTACATGACAAGGGATACAGAACTTTTCAACAAGGACAGTTGTTTTGAAAggtattttttgtatttcaacACATTCCAATGAGTCAATGTTCTTTAGGACCAATGCCTGAAAAGGAAATGTTTCAGTACCTTTTCTTGGATCAGAGGACTAGAATTCAGCCCCGGGGGCCAGTAATAAAATATGTGTTTAAACAGTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1107434 lncRNA upstream 13559 35854401 ~ 35854706 (+) True G972252
TU1107372 lncRNA upstream 105758 35762261 ~ 35762507 (+) True G972192
TU1107338 lncRNA upstream 133726 35734309 ~ 35734539 (+) True G972158
TU1107334 lncRNA upstream 136131 35731921 ~ 35732134 (+) True G972154
TU1107316 lncRNA upstream 148765 35719182 ~ 35719500 (+) True G972137
TU1107619 lncRNA downstream 79240 35973031 ~ 35973610 (+) True G972427
TU1107652 lncRNA downstream 124438 36018229 ~ 36018554 (+) True G972454
TU1107653 lncRNA downstream 132609 36026400 ~ 36026768 (+) True G972455
TU1107656 lncRNA downstream 136173 36029964 ~ 36030298 (+) True G972458
TU1107658 lncRNA downstream 138359 36032150 ~ 36032396 (+) True G972460
LOC110535011 mRNA upstream 2182 35720089 ~ 35866083 (+) True LOC110535011
XM_036934607.1 mRNA upstream 266657 35595222 ~ 35601608 (+) False adcyap1
XR_002475284.2 mRNA downstream 49923 35943714 ~ 35950398 (+) False LOC110535625
XR_005034620.1 mRNA downstream 49923 35943714 ~ 35950398 (+) True LOC110535625
NM_001160663.2 mRNA downstream 112294 36006085 ~ 36011517 (+) True mlrn
LOC110535012 mRNA downstream 118855 36012646 ~ 36019822 (+) True LOC110535012
LOC110535013 mRNA downstream 171421 36065212 ~ 36075733 (+) True LOC110535013
TU1105524 other upstream 1345925 34517826 ~ 34522340 (+) True G970489
TU1105305 other upstream 1688217 34179703 ~ 34180048 (+) True G970283
TU1105066 other upstream 1697278 34163816 ~ 34170987 (+) True G970054
TU1104738 other upstream 2073204 33794375 ~ 33795061 (+) True G969752
TU1104419 other upstream 2263455 33604513 ~ 33604810 (+) True G969456
TU1107936 other downstream 356182 36249973 ~ 36250586 (+) True G972725
TU1109131 other downstream 1648305 37542096 ~ 37543202 (+) True LOC110535658
TU1109202 other downstream 1757347 37651138 ~ 37679368 (+) True G973918
TU1109337 other downstream 1937730 37831521 ~ 37835335 (+) True lztfl1
TU1109354 other downstream 2126658 38020449 ~ 38038711 (+) False LOC110535015

Expression Profile