RNA id: XR_005034620.1


Basic Information

Item Value
RNA id XR_005034620.1
length 5042
RNA type mRNA
GC content 0.44
exon number 7
gene id LOC110535625
representative True

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 35943714 ~ 35950398 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAAGCTGACAAGAGGTGatgctagggctgggcgatatggcgaTATATATCGTGTGACAATAGAAAAACGCATATGATTTCATATTATGCTGTATCGTTTATTTCGATGTGTCGCAAATCACTCTTTACGGCAATATTTTTCGTCAATTGGACGACACTTTGCGTGCCGTGTGGAAGGAAATGTGCAACACTAACAAACATGGAGGAGAGTGAATGTGACACAGAGCACGGAGACACGGAGCTCGTACCTAAAGGAGGGGTCACATGGACGTGGTTTGGGTATGAAAAGTCTGACACGGACCAGAAAACCGCCCTCTGCAAAATATGCCGCAGGCCGGTcctgacaacaggctcaaacaccagtAACCTATTTTACCACCTACGCAAGAATCACGTGAAACAGTACGGAGAGAGTCTACGGATGAGACCCCAAAAAGTAGAGTTGAGTGCTCAAAACAAACCCCCGACTCAGACGCTGCAAGAGGATTTTTCCCGGGGCACATCATATGGCAAAGAATCAGGAAGATGGAAGGAGGTAACAGCTGCCGTTACAACTTACATCTGCAAAGACATGTCCAGAATTTACACGTTCGAGAAACGGGAGTTTCTTGATTTGGTGCTAACACTCGACCCAAGAAAATCTGCTATATCGTGATATGCATCGTTATCGGGATATGAAATTACCTATATCGGGATATGAGaatttggccatatcgcccagccctaggtGACGCTCCTGACAAGGAGAGGTGGCCTAAATATTGCAGCCATGTCATCCCTCACACAACAACTGAGGACTGCTCCAAAGTACGCCAATTTGCAAAAAAAGCTGGGGAAAAAACTAAAATGTGGAAAGCACTAGCGAAATGGAGGCACGACCACACACCATCCCAGCTCGTTACCAGACTGGTTGTTATGATGACAGCAAGCAGTAAGTtgattatacactgagtatattaACATAGGCACAGATCCGATGCATATGACACGTTTTCTGTTTTGTATCTAGCAACTGATATAGATGAGTTCTTTATGGAACCCTGCTTTCCAGAGAGAACTTTACGTTTACCTCTACCACCCAGATGTCAGGACACAAATGAAGATATCCCACAAAAAGGAAAAGTCTCCAAAGTGTCCAGTGAACCACAAACTGTGTCATGCAGTGAGTATTGAGAGGAACCAACATTTTGGACAGTGACCTACACTCTATGGCCAAAGGTCTACCAACCAAAACAACAACTGGCGAAGTAGCGCTACCTGCAGCATCCAGTCTCCAACAAAAGGAATCTGCATCCACAAGTGCCGTGCAGTCTCAGGAGATAATTGCAATGATGTCTtgttagtactgtacatgttcacCTGTTATTTAACAGTACTTTGGTCAAAATAGCAACTCCCCTTGAATCCTTTCTGCTTAAACCCCGTGTTTAATTACTATGTGTTATGTGTCTCCGTTCTAATCAATGTCGTCTTGCTAAGCCTTCCAGACACAGATACTGATGAAGCGAGACATTATAATTGCGAATCAGCAAGAGCAACTGAGGCTCCTTAATGCTACAAGGCCATCGACCACAGCTGAGGACCTCGACATTCTGCAATCACCGTTAGACTCTGTGGCTGATCTGAAGCTACTGTGTAGCGGAGCTCAACAGAGGAGAATCTTCGCAAACAATTGACCACAGCACCTGAAAtaacggagagagacagaaggagcaCAAGCACAGAGTCGACCCTTAAGCCTTTTGACTAAAGAGTACATTTTTATTAAATGTCCAGTGGTAAAAAGGGAAATAATGTAATTCACGGCTAATCCAATTATAGTTCATCAAGAGTTAGTAATTAACagttgtatattgtattttgtatttccTTGTTGGTTAAATGAATCAAATGTTATCTATAAGAGACCCCTTTTCAGTCATGTATGTGGCAAAAATATTATTGATGTAAAGGTCTGCAATAGTAGAAATGTCCTTTCTCTTCCAAAATAAAAAAGTGTTGTCAGTTAGTGGGGGGAGCATGGTCACGGCAAATAGGAGTACAGACAGAGGTCTCCGGGAGACCAAATGTTTTCCTTATTTGATACCAAATGTCATGATTTTTTTTGCATAAAGTTATTGCCGTAATACCTGTTAGTTGATGAAAAGAGAAGTGCTGGAAGAGAGATGTAGTGTATATCTTCTTCAATAGCGAGCCATGAAGGGGTGGAGAGTTCTACTATGCCAGGGTATACATCCTGCCAATAAAGTCAGTGCTCTAGCATTTGCTGCCCAATAATAATGCTGAAAATTTGGCAGGCTCAGACCCCCTAATTGTTTGGGCTTGATTATACGTTTAGAGATACGGTGTACTTTGTATCCCCACACAAAAGGCAGATAATAAAATCCAAGGATTTGAAAAAGCTTTACTTAAAAATATAGGCAGAttctgaaagagagaaagaaatctGGGGAATGTAACCATTTTAATAGCGTGCCTCTATGTTGCGCTTCAGCTTGACGAGGTAGTTCAATTTATAAATCAATTTAGAGTCCTTAGGGATGATAACCCCTAAATATTACATTTAGTCACGTGTGATTTAAAAGGTATATGTTTAAGGAACTCTGGGTTTAAGTCACCTTTAGGAGGCATGAATTCACTTTTATCCCAGTTTATGGTGTACCGAGAGTTCTCCAAATTATTCAATGAGATCCAACAGCGGTGGAAGTGACTCTTCGGGGCGTGAGACCAACAAGATGATGTGCATAGAGCGAGAATCGGTGATCAACCTTGCCTATGTTTAGAGGAGCAATGGCAGGATGGCTGCTGATACTGATAGCTAGGGGTTCCATAGCAATGGTGAATAGCAATGGACTCAAGGGGCATCCCTGGCAGCAGGAACGTTGAAGTGAAAACGGAGGTGATTTATTGTAATTTGTGAAAACTGAAGCCGTCGGGCACGCAGAGTATTTCAACCCAAGAGACAAAACTCACCCAAACCAAACTTGGTCAAATGCTTTTTGAGCGTCAAGTGCAAGTATTGCAACTTTAGAATCTTTGTCATGTCTGGAATACATGATATTCAGTCGACTAATGTTGTAAAATGAAAATCTGCCTGCGATAAAACCAGTTTGGTCATGATGAATTATAGTCGAAATGCATTTATTTAGTCTGTTCGCGAGTATTTTAGTAAACACCTCGAGTTCACATCCGAGGAGGGCAATAGGACGATATGAAGATGGATCGGCATCTTTATCTTTCTTTAATATTAGGGAGATATTAGTTTCAATGGAGTGTTTAAACAGAGGAGTAACCTTTTCTGAATAAACTTTGTAAAACTTCATACCAAAGCCATCAGTGCCAGCCGCTTTCCCATTAGGGAAGGAACATACTGCAGAGACAACCTCTTCGAAAGTTCTCTGCATTTAGCTCCCTTTGAGCAGCGCCGCATAATTTAGGTAGGGAAAGGGAATGGCGGAAATCAGACATTTTTGCGGTATCTGCAGTGGTCTTTGAGGTGTAGAGGTCTTGATAAAACGTTGTGAAATGTGTTAATTCCTTTTGGGTCCGTAGTAACAGCTCCTGTACTAGATTTAATTCTATGACTAGCTCTATTGATTGGCCTGTATACCTCTCAGCTGGTGTGCCAGTAGTTTTTCCCGGTTTGTCACCCAACTCAAAGTGTTTGTTTAATCTTTAATAGCATTGTGTTTACTTGGTTAGAGAAAAtagtattgtattcatattttagTCATTCAACTTGGCGCTTCTACATAGACTCTCTCAAGCTCCGGTAGCTGGGCCTCAATTTCTAATCTTCTCTGCaccgaggtaaagacagtttcaaGTTGGATATTAGACGGATATTCTCGCTTCAAACTTCAAtagctttcaaaccacttgagccaAATAAGTGTCATGATGTAGGAAAAATTGCGGGAAACATTGCACTGGTCATATTTTCACGATTTGGACATTCATTCACTTTCCAAAGCTAATTAACATTTGGAAATGTGAGCGACATCTTGTATTCCTAGTTGAATTAGTTAGGGAGTGTAAACCAAGTACAAACTTTTTTTACattcaaatttcaatagctccttggtcatgtgacctactgacctcaACCAAGGTTCAGAATGTTCACTGACTACCagttagtttgtccattttcactTGATTTTACATGAATTTTTATAAAATTTTACATTTCAGTAGCTCCTTGGttatgtgacctactgacttcaaagaaggttcagaatgtacactcagtgggcaagtcagatccgtaatgTCGgaataaggattggctctaagggctaggttggtcgggctggggtgcgaagcgggacTCTCGCCGCGGCTGGAGAGCAGTCGCTCCGTCGCCCTCTCGCCGCCGGAAGTTcattgtgcggcccatctcgcgGTCTGTTGTGCGTGGTCTCGCAAGTGGATGCGTGCGGATTCGTCAGGGTGGTGTCCGTCAGCGGGCTTGGATCCGCGGACAGGGGTTGGATCCGGCGGTTGGTGACGGCGACTCTGGACCGCGCCGGGCCCTTCTCGcagatctccccagctacggcgCTCGCCGGTCCTGTTCGTGCTGGGTCTCATTGGCTCCTatcagctgacttagaactgttGATGCAATGTGATTTCtccccagtgctctgaatgtcaaagtgaagaaattcaatgaagcgcgggtaaacggtgGGAGTAACAATGACTCTCTTAAGGAGTCCTTAGCCTTAGTAAGGGAGATAACGAGGTAGCCCTCTAGCAGGGCTCTTCGAATCCCTCCCTGTATGTCACCTGTTGTCGCTAACGATGCAAACCAAAACGGGAGTTACCTCGTTACTAGTCCGTACGCAAAGAGAGTCTTGCAGATGGTGATGGGTGTTGATTGTTAACGGTAGGCGGAAGTCGGTCCTGGAATATGGGACTTTCGGTCAAGCATAAAAATGTGAGGGGGGGGGGTTCCACCAGACTCAATGATTTGCTGCGGGGCTCTTGTAAACTAATCCTGaccttgacaggaagccaatcAGAGAATGATGTCTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1107448 lncRNA upstream 49955 35893158 ~ 35893759 (+) True LOC110535623
TU1107456 lncRNA upstream 62365 35881083 ~ 35881349 (+) True G972271
TU1107451 lncRNA upstream 68038 35875476 ~ 35875676 (+) True G972266
TU1107434 lncRNA upstream 89008 35854401 ~ 35854706 (+) True G972252
TU1107372 lncRNA upstream 181207 35762261 ~ 35762507 (+) True G972192
TU1107619 lncRNA downstream 22633 35973031 ~ 35973610 (+) True G972427
TU1107652 lncRNA downstream 67831 36018229 ~ 36018554 (+) True G972454
TU1107653 lncRNA downstream 76002 36026400 ~ 36026768 (+) True G972455
TU1107656 lncRNA downstream 79566 36029964 ~ 36030298 (+) True G972458
TU1107658 lncRNA downstream 81752 36032150 ~ 36032396 (+) True G972460
XM_021620734.2 mRNA upstream 49923 35868265 ~ 35893791 (+) False LOC110535623
XM_021620733.2 mRNA upstream 49923 35868266 ~ 35893791 (+) False LOC110535623
LOC110535011 mRNA upstream 77631 35720089 ~ 35866083 (+) True LOC110535011
XM_021619861.2 mRNA upstream 342106 35595226 ~ 35601608 (+) False adcyap1
NM_001160663.2 mRNA downstream 55687 36006085 ~ 36011517 (+) True mlrn
LOC110535012 mRNA downstream 62248 36012646 ~ 36019822 (+) True LOC110535012
LOC110535013 mRNA downstream 114814 36065212 ~ 36075733 (+) True LOC110535013
XM_021620742.2 mRNA downstream 200682 36151080 ~ 36157644 (+) False LOC110535630
XM_036935362.1 mRNA downstream 200682 36151080 ~ 36157644 (+) False LOC110535630
TU1105524 other upstream 1421374 34517826 ~ 34522340 (+) True G970489
TU1105305 other upstream 1763666 34179703 ~ 34180048 (+) True G970283
TU1105066 other upstream 1772727 34163816 ~ 34170987 (+) True G970054
TU1104738 other upstream 2148653 33794375 ~ 33795061 (+) True G969752
TU1104419 other upstream 2338904 33604513 ~ 33604810 (+) True G969456
TU1107936 other downstream 299575 36249973 ~ 36250586 (+) True G972725
TU1109131 other downstream 1591698 37542096 ~ 37543202 (+) True LOC110535658
TU1109202 other downstream 1700740 37651138 ~ 37679368 (+) True G973918
TU1109337 other downstream 1881123 37831521 ~ 37835335 (+) True lztfl1
TU1109354 other downstream 2070051 38020449 ~ 38038711 (+) False LOC110535015

Expression Profile