RNA id: XM_021620742.2


Basic Information

Item Value
RNA id XM_021620742.2
length 3329
RNA type mRNA
GC content 0.43
exon number 5
gene id LOC110535630
representative False

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 36151080 ~ 36157644 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAGAGAAGGCTattgctatttaacgcaacagttttgGAAAATGCGATTGACATTTTATTTGGTACAATGAAAAATTAAACGAAACAAATATTtttgtgtgcactatgtcatcacgcaCTGATTTGTATCTGGAACGAGTCCGTTTGGTGACAACACTAGTGCTGGTTAAATTGCGCATATTTTCTACATGTGGATTTTAGAATATTGTCATGAAAATCTgccgccaattggatggaaacctagctactcaTGGTGGGTGGATCATGTATAGGTTTCATTCAGTGGTTGTGAAGTAGGCTTTGCTACAGATGAGGCTATGAGAGCATCATCAAACATTGCTTGAAGCCTCCAGTAAAAACTGGTCTGCCCTTCAACGATTCAGCTGCAGAACATATTTTTTTGCACTCAAACAAAACGCATGCGCATGGAGCAAACGAATTGCAACACAGTGCAGACGGTTGTGATTGAGGCAAGAATCACCTGTATTCTGGCATTCATGGTGACACAGTGAGTACAGTTACATTGGGATTTCCGCTTTGAAATATAATTGAATGCTAAAATTTGAATTAGATTCAGCAATCTTAATGGAAAATGATGGACAACTAGATAATTATTGCCAGCATGGTTTCTTGACAATCTCGTTCTATCTTTTGGAAATAGCTACCGAATTGAATggtcatgtatttatttattgctgCTGTAGTCATAATTTGCATCAGATCATTAGATGCCATATTCTCCATCTTGAAAGAAAAATACACCTTATGCGTTATTATACTGTCAGCATACAGTATTTCGTTTTAAATATTCTCAATGTTGATTAACCTAATAAATggtcaaaacaaaacaaaagcgcTCTAACCCCAAGTCTCCATCTCTGTTGTATCTGAGGATGCTTGGATGGAGGCAGCAACGCCTCGTCTTTCTCATCCCATGCATTTCTCACCCCAGAGCGCGTTAAAATGATTTGATCCTGCGAATGTTAGGCTTGGTAATAGGCGTTTAATAGCTTAGATATAGCTTATATATGTTTATGTATGTAAATGTCAATGACGGTATTTTTCATAGCCAACTGGTACTACATTTCTCGCTATAATAAATTATCGTTTTGACAGTGAAAATAAGTGATCAGCGATCATTCTGCTCTGTTGAAGTGGTCAGAGCATTCCGCAAGACATGCGCGCTCGAGCTGATGTGACGACATGCCGTGGGGATTCCCTCAGTAGGCTACTATTTTTACGTGGTTTCGAGATGTTGTACAagcagtggcggttctagcttgtatggctccctgggcgaaccaCCCCCCAAAATATGACtcataaatataaaaaataagtatcaaagacaaatagaaacaaatttgtgttgatttggcactcgagcatcaacacattacccatcccccaacactgctAACCAAGAGTCAAAACCaaaccaattcaccttggtggtgtgcagactggtttaATATTATTCTTAACGATTTCGCACAAAacagaaaaaaatgcaacaatatgtctgtgtaactatatattcacagtattatgaatgaattgtggtttatttggtagcatttcgtagtgtgtctgattttactaattgcattagtactgtacaaatttagaggtgcgctatttgataggAGGAGCAGGGGAATCTATCTCCGGCTCCCAGTTGGGAGATCTGAGGTCgcttccctccccatctcctgcttctgagtgggagaccttcccaggcagttgcctgcctagctcacaaactagaatcagggcgcccactccgacaaggttaattgacccacagtcccacacggtgacatgctATCATTGACTTGGCGTGCAAATGAGCGCTAGAAAACCGATCGCGCAATTGTCACCATTCCAAAAAAATGTGTGTGGGCGCCCCGTGCCGCCCCCGGCAAGATGCCGCTCTGGGAggctgcccatgtcgcctatacctaaatccgccactgTGTACAAGTCTTTAAAATTGTATATTTTTCACTCCCTCAATGTCATGTACAAGAAGATATGGAGACAAGTATACGGATGGATGACTGATGCCTGCATTCTATGTGGGAATTATCTGAACCAACTCGAGTGTCCAGGTTGTATAGCCTAACCCATGGGGTCAGAGCGGCTGGAGATGCGCAAGAGACAGATGCAAATGCACCAGGAAGCCGCGGCCAGTGTCCTCCAATCACAGCACAGGATGGGGAACATGCCCACCAACGCCTCCAATGCCTGTTGTTTCTGCTGGTGTTGCTGCTGCAGCTGCTCCTGTCTGACTGTTATGACAGAGGATGAGAGGATTCAAAGAAGCACCTatgagaggagggcagagggaaTTGCAAACTGTGATGACAGCCCCAAGCCTACTCTGGAGGATGTGACAATATGGACCATGTCGTTTGAGAGGCTGATGAAGAGCCCCGCAGGGCGGGGTTGCTTCCGACAGTTCCTAAGGACAGAGTTTAGTGAAGAGAACATGATGTTCTGGTTGGCCTGCGAAGAGCTCAAAAAGGAGACCAACAAAACTGTGGTGGAGGAGAAAGTACGACAGATCTATGAGGACTTCATTTCTATCCTCTCCCCTAAAGAGGTGAGTTTGGACTCACGTGTTCGAGACGTGATCAACAAGAACATGCTGGAGCCCACGTCCCACACGTTTGAGGACGCCCAGCAGCAGATCTACACGCTGATGCAGAGAGACTCATACCCACGCTACATGAACTCGACAGCGTATGCCGAATTACTGCAGGGCCTGGAAGAACCACCACCTGCCACAGAGCCATAGACTTCCATTCTCCGTCAATCACTCTACACATTGCTCTTAGATGACACTTGTGTATCTTAGGTCCAGCTTTCAGTTACAGTTCACATGTTGATTGATCAATAGGCTCTATTTACAAAAATGTCGATATTAAGGTGTAACTACTGTGTGCTACCTTAAATATTGGCTTTCCAAaatcctcaaagcgagcaagaACATACGCTGTATTCCAATTCAGATTTCAAGATGTttccaaatatatttatatttttatattgcCTAGCACTTCACATTGCACTTTTCTATAGTTTTATGAGGGAAAAGCATGTTGTATCTGTTAGCACTGCCTTTGTGTGTAGTTCTATTGTCAGACTTAAATCATTTTCATTTCACTTAATATTAAGAAGACATGGGAAAGTGCCTTGGCATTAGATCGTTTACCACTACACCTTcaacatacagtacctgtcaataGTTtgggaacacctactcattccatggtttttctttaattttactattttctacattgtagaatagtgaagacatcaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1107880 lncRNA upstream 1033 36149848 ~ 36150047 (+) True G972671
TU1107852 lncRNA upstream 20421 36130441 ~ 36130659 (+) True G972644
TU1107845 lncRNA upstream 24778 36126078 ~ 36126302 (+) True G972637
TU1107660 lncRNA upstream 114769 36036020 ~ 36036311 (+) True G972462
TU1107658 lncRNA upstream 118684 36032150 ~ 36032396 (+) True G972460
TU1107870 lncRNA downstream 169 36157813 ~ 36158831 (+) True G972662
TU1107871 lncRNA downstream 1354 36158998 ~ 36159369 (+) True G972663
TU1107897 lncRNA downstream 23787 36181431 ~ 36181849 (+) True G972688
TU1107896 lncRNA downstream 24431 36182075 ~ 36182289 (+) True G972687
TU1107907 lncRNA downstream 37137 36194781 ~ 36195062 (+) True G972698
LOC110535013 mRNA upstream 75347 36065212 ~ 36075733 (+) True LOC110535013
LOC110535012 mRNA upstream 131258 36012646 ~ 36019822 (+) True LOC110535012
NM_001160663.2 mRNA upstream 139563 36006085 ~ 36011517 (+) True mlrn
XR_002475284.2 mRNA upstream 200682 35943714 ~ 35950398 (+) False LOC110535625
XR_005034620.1 mRNA upstream 200682 35943714 ~ 35950398 (+) True LOC110535625
XM_021620743.2 mRNA downstream 7145 36164789 ~ 36179098 (+) True LOC110535631
XM_021619900.2 mRNA downstream 31780 36189424 ~ 36191073 (+) True LOC110535014
XM_021620744.2 mRNA downstream 73471 36231115 ~ 36233394 (+) True sox17
XM_021620745.2 mRNA downstream 97579 36255223 ~ 36266074 (+) True LOC110535634
XM_036935370.1 mRNA downstream 187082 36344726 ~ 36461901 (+) False LOC110535637
TU1105524 other upstream 1628740 34517826 ~ 34522340 (+) True G970489
TU1105305 other upstream 1971032 34179703 ~ 34180048 (+) True G970283
TU1105066 other upstream 1980093 34163816 ~ 34170987 (+) True G970054
TU1104738 other upstream 2356019 33794375 ~ 33795061 (+) True G969752
TU1104419 other upstream 2546270 33604513 ~ 33604810 (+) True G969456
TU1107936 other downstream 92329 36249973 ~ 36250586 (+) True G972725
TU1109131 other downstream 1384452 37542096 ~ 37543202 (+) True LOC110535658
TU1109202 other downstream 1493494 37651138 ~ 37679368 (+) True G973918
TU1109337 other downstream 1673877 37831521 ~ 37835335 (+) True lztfl1
TU1109354 other downstream 1862805 38020449 ~ 38038711 (+) False LOC110535015

Expression Profile