RNA id: XM_021620750.2


Basic Information

Item Value
RNA id XM_021620750.2
length 5166
RNA type mRNA
GC content 0.47
exon number 10
gene id LOC110535637
representative True

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 36344726 ~ 36461901 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCATGGCAGGAGTGAAGGTAGTGGGGTACTGGCGCATGGGCAAGGTTggcccccccctctccctctttccctcacgCCATACATGCTGGTCACCTGTCCCCATCGCCAACCCATTTAGACTGAATGTTCTCAACCATAATTAAGGcagagtgagagggacagagagttgTACCCCTCTCTGTTCCTGCTGTTCATTGTGGAGGGAGGGTGGTGTAACAGTCTGAGGAGacacgagggagaggagacacaggagaggcagagagggaggagagagagtggaggtgaCATCTGCTTGTCTTGGGAGGCAACCTTAGGCTTGATCCTGCAGTGGTTATTCAGATGCACCAAGATCAAGGAAAATGGTTTCTGGTTTGGTAGCAAGCATCGTGCACTAGCTGGTCTCTGCTCTGTGGCCGCGAGCATGGTTTAATTGGTTTCTGTCAGGTTTTTTGGGCATTCAGAAGACAATTTTTACAATATTTTCTTGGGCATTCACTGGAGCTTCATTTAGCTCCCTCCAGGATCCGATGATTACAGGGCAGTTGAGCAAGCCGCTGCTCTCCCTGCGCAGCGAGATGAGCGCGGCAGAACTCCGGGCAGAGGACAAGGCGGCCACCCCAGACAGCAAGCTCAATGACGAGCCCCTGCTCCTGTCCTCCGAGGCCACGGGCAGAGAGGACACTCCCAACAAGCTCTATGGAGCCCGTGACTGCTCTGTCCAGTCGGATGCCAGCAACAGCCCGTCAGAACAGTGTCATCTGGGTCAGTCTCACCCAGCATACCCGGTAGGACCACAGTCTCTGCTGGTGGCCCAGCAGCTGGCCGGGGGGTCGCCAGGCCTGAACCAGCCCATCCTCATCCCCTTCAACACGGGCGGCCACCTGGGAGGCCAGCAGGGTCTTGTGCTTTCCCTGCCCACCGCCAATATCCAGGGCCTGGTGGCTGCAGCAGCCGCACAGGGCATCATGACGCTTCCCCTACAGAACCTGCAAGCTACCTCATCCCTGAACTCACAGCTTCAGCACCTGCAGCAGCTCCAACAGATACAACAGCACCACCAtcagcaacaacaacaccaccatcagcagcatcaacaCTCCCACAGCCACGCCCACAACCAGCTGTCATCGCGGGGTCGCATGACCCCGCCCGGCCTTCAGCAGTCCTCTGTCTCGGTCCCCTCCCCTGGctccgcctcctcctccaccacctccatgaCTGGCTCTGGCCAACCGCCACAGTCTTCGCCCCTCCGGCAAAACCTATCGCCGGCCCGCAGCCTACCCTCGCCCGTCACCCCGCCCATGCCACTGCAGTTGAACCCTCTGGCCAGCCAGGCAGCGGTGGCGGCGGCGGCTGCTGCAGCTATGAGCTCCATCGCCGGCTCCCAGGTCTTTGGCAACGCCCTCTCCAACCTGCAAGCTGGAGTCACGGGTCAGCTGGTCACCAATGCACAAGGACAGATAATTGGAACGATCCCACTGATGCCCAACTCTGGGGGGCCCTCGAGCCAATCAGGGGGCGGAAACCCTGCGCTGCAGGTCCAGCCAATTACACCTCAGCTTCTGACCAACACCCAGGGCCAGATCATCGCCACGGTGATCGGCAATCAGATCCTGCCTGTCATCAACACCCAGGGAATCACACTGTCACCAATCAAGCCTGGACAGCAGctGCCTCAGGCTCAGCAGGTTCAGACAGGCCCAGTGTCGTCTCAGCCCAACCTGCTCCACATGCCCCACAGCCAGAGTCCTCTCCGCCAGgtctcttcctcctcatcatcgtcctcttcctcctccgctCTCAGTGTGGGTCAGCTGGTCAGCAACCCCCAGATGACTCCCAGTGAGGTGGATGGGGTCAACCTGGAGGAGATTCGGGAGTTTGCCAAAGCATTCAAGATCCGTCGCTTGTCCCTTGGCCTGACCCAGACTCAGGTGGGACAGGCGCTCAGCGCGGCCGAGGGCCCAGCCTATAGTCAGTCTGCCATCTGCAGACACACCATCCTGAGAAGCCACTTTTTCCTACCACAGGAAGCCCAAGAGAACACTATAGGTAGCAGTCTGACAGGCAAACTGAACCCTGGCCTTTTATATCCTGCCAGGTTTGAGAAGTTGGACATCACCCCAAAAAGCGCCCAGAAGATTAAGCCCGTTCTGGAGCGCTGGATGGCCGAGGCCGAGGCCCGCCACCGGTCCGGCATGCAGAACCTGACCGAGTTTATTGGCAGCGAGCCCTCCAAAAAACGCAAGCGGAGGACCTCGTTCACCCCGCAAGCGCTGGAGATCCTAAACAGCCACTTCGAGAAGAACACGCACCCCTCTGGACAGGAAATGACCGAGATAGCCGAGAAACTGAACTATGACCGCGAGGTGGTCCGCGTCTGGTTCTGCAACAAGAGGCAAGCGTTGAAAAACACAATAAAGCGGTTGAAACAGCCCGGTGACCTGGACCTGGACCTCGGCCCGACCGCGCCCATGGACCCTCTCTGTGATTCTCTGGATGAGATCCCAAAATGAACGACCAAAACTAGAGATAAAGAGAAAAGTCCAAACAACATGGTGGATCATGACCCAAAGTGGGAAGAAGAATGAAAGAACATTCCAGCCCTTTTATAGAGTCAACTGAAAAGGACAGTTAGGAAAGTTTGCAAACGAGAATACGTGTTATCAGTGTGATTACCACAGTTATTGACCTTTGCCGAAAtccccaaataaaaataaatatgttaGTATTTGATAGAAAAAGATTACAAACCTAGAGTGTGCTGTTTCAAAGAGTTCTAGTACTGGCCTCATAGACCAGAATATTGTCCAAATTTGGGTTCCCATTAGGGAGATTTTAGTAAAGCAATCATGCCAAAATCAAAGACAAAAACACTAACTACTTACCAAAGTCTGTTGCATCGGAATACTAAGAATAATTTTTTAAGTGTAAAAGTGTTCTAAATTTTTACATTTGTACTGGCAAGAACATCTAAGATATGTGTGTGAGTTTGGCTGTACATTTAATCTTTGTCTCACTTAATTTCATTATCTCCCGTGTTTATATGTAAATATCTACTAAATTGAAACCACAATGTCAAATTTGTCATGCAATTGTGTTTCTTTGCTGTTCAACAATGGCATATTGTTTGTCTCAGACACTTTCTCATCTGCAACTATTTTCAGTCACAGTGTAACTTTGTACAACTTTTACAAGTATTTATCGATGATTTTATGAGATTGTCTATGTTTTGGAGGAAGGGTAATAAACTGAAGGCTGTCTAAACAATGAGGGGATACTCTGTACCTAACCATATAGGTTCTGTCTCTGTGCACCGACTCTATTGTGGATATGTCTGAAGCTACTGTATCTCATTCTGTTGCCAAAGCCTGATAGCCAAAGAACACATTACTTCAGCTCAAGAACATGGGGTTATTTTACCTTGGCCAATAACATGTTTTAGTTATTGTTATGTGCCTAAGTTCCCTTTCTCTGGTTCTTTTTACTGTACAGTTTATTTCATACACTGGGCTCAACTAAGTTACACAAAGGCCAAGAGAATGCCAAATAGCATTTTGATTCCAAAAAATGACTCTTTGTTAGTTCACAACCCTTTGATATTGCAATATAGAACATGTGTTTTACTGTGAGGACTTTTCTGCCCATCCCTTTCTGAAGTGTGTGTCTAGTTTTTTTCTATTTGAAGAATTGCTCCTGCATGTTTGAGATGAACCACTTATAACAAAGTTGGACTTACAGAAATCTGGAAACAAGACAACATAAAACACAAAAGGCAGCCCCAAGTTCCAAATCCCtaaatacatgtatatttttCAGAGTACATTGTCACTGAGAACAAATGACACGTTAGTGGTTTTAAGCAAATATTTTGACCTTTAAGAGCAAAATGTGCATTACTTCCCTTTAGCAttcagtaactcattataatctTATCAATCTGAACGTTTTCTAATCGCTCAATCCTTTGTCTTCAGGGGTCAAatatgtttttgtgaaaatgtccTGCTGCGGTTTTGTTTCTTTTTATTTTAGTGATTCTATAGTGAAGCCTTGACAGACAGTATAGCCTAATTCAAAAAGTATTTTGGGGAAAAGTCGTGTGAAATGCAAGACAACCAAGTAGCCACTTCGCAAGACATAATCCATATTCATTTCAACCAACAAATCAGAGGGTGTTGTTGCTGTGTAGATGTTGGATATGAACAGAGTGTCGTCGCAACATGTAGCTCACCTCCTATAGGTGTACTTCAATATTACCAGGGCCCACATGGAGGATTTAAGGAATCCATATTGTTACACCACGGATGTGTTACTGACCTATAGGCCTACAGCCACTGTGTTGAACTATAAAGAGTATTGCAAACTGATACACACATGTAAAACCACTTTTCAGAACTCTTAAGATTACACATTGATACGAAACGTTCTAATTTGATTCAAGTAAAACACTTAGTCCCACTTTACACTGTTGCTTGCCTAGCAGCATAAAGTGCACTTGATAATACTTACAAACACATACAGAAATAGACATTAGTTGAGGAGAGTATACAGAAGGCTGAGGTTTGAGAGGCACTACATAGGAGCCCCCCCTTACGTGTTCATTTACCCTTTATtatttactgtaggcctaccttgAGCAAAGATTGAATACTTTTAGCAGGAAGTTGTTTTTAACAGTGTAATATTGTAAGTCAGTATTACTAAATGGTGTTCAATCATAATATACTGTAAGTCATATGTGATTTGACTCAATTTAAAGACTTTTGTGtgttccccctctgtctctcaccccaCCTCATCCCAACATGTAAGAGAAGTGATTATGCGGCTTCTGTATTGTATGGGCAGGTAGTACTGAGGCTAAACAATGAAGCTGTAACCAAAAACAAAAAGACAACGGACGGAGTTAAACCTTCACGTAACCTTTTGATGCTGGACCAAAGCTCTATAGTTAAATGCACATTGTACAGAGAAATGGGTTCATGTCGCCGACAATCTTGAAATACAAAGAGAATCGATGAGTAGATAAGTAGCAGTTCTTTTAAATTTGACGTCACCACTGCCCACCGTACATTGTGAGCAATGCCATGCAAAAACCGTCATAgaaaaaaacacagaaaaatgACTCCTGTATGTTTGAAAGTAGTGTTGACttctcat

Function

GO: NA

KEGG:

id description
K09368 POU6F; POU domain transcription factor, class 6

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1107958 lncRNA upstream 41818 36302097 ~ 36302909 (+) True G972742
TU1107960 lncRNA upstream 49031 36292387 ~ 36295696 (+) True G972744
TU1107957 lncRNA upstream 53219 36290910 ~ 36291508 (+) True G972741
TU1107938 lncRNA upstream 91943 36252580 ~ 36252784 (+) True G972727
TU1107908 lncRNA upstream 148578 36195843 ~ 36196149 (+) True G972699
TU1108698 lncRNA downstream 370894 36832795 ~ 36833926 (+) True G973455
TU1108871 lncRNA downstream 622941 37084842 ~ 37086656 (+) True G973611
TU1108922 lncRNA downstream 669004 37130905 ~ 37134701 (+) True G973659
TU1108985 lncRNA downstream 769784 37231685 ~ 37231898 (+) True G973716
TU1108990 lncRNA downstream 774893 37236794 ~ 37237025 (+) True G973721
XM_021620745.2 mRNA upstream 78653 36255223 ~ 36266074 (+) True LOC110535634
XM_021620744.2 mRNA upstream 111333 36231115 ~ 36233394 (+) True sox17
XM_021619900.2 mRNA upstream 153654 36189424 ~ 36191073 (+) True LOC110535014
XM_021620743.2 mRNA upstream 165629 36164789 ~ 36179098 (+) True LOC110535631
XM_036935363.1 mRNA upstream 187083 36151080 ~ 36157644 (+) True LOC110535630
XM_021620751.2 mRNA downstream 13601 36475502 ~ 36489512 (+) True LOC110535639
NM_001124699.2 mRNA downstream 71032 36532933 ~ 36535742 (+) True c-myc
XR_002475488.2 mRNA downstream 83497 36545398 ~ 36584763 (+) True LOC110536619
XR_005034810.1 mRNA downstream 245551 36707452 ~ 36707506 (+) True LOC118937471
LOC110535645 mRNA downstream 366580 36828481 ~ 36829107 (+) True LOC110535645
TU1107936 other upstream 94141 36249973 ~ 36250586 (+) True G972725
TU1105524 other upstream 1822387 34517826 ~ 34522340 (+) True G970489
TU1105305 other upstream 2164679 34179703 ~ 34180048 (+) True G970283
TU1105066 other upstream 2173740 34163816 ~ 34170987 (+) True G970054
TU1104738 other upstream 2549666 33794375 ~ 33795061 (+) True G969752
TU1109131 other downstream 1080195 37542096 ~ 37543202 (+) True LOC110535658
TU1109202 other downstream 1189237 37651138 ~ 37679368 (+) True G973918
TU1109337 other downstream 1369620 37831521 ~ 37835335 (+) True lztfl1
TU1109354 other downstream 1558548 38020449 ~ 38038711 (+) False LOC110535015
TU1109353 other downstream 1580805 38042706 ~ 38043330 (+) False LOC110535015

Expression Profile