RNA id: NM_001124699.2


Basic Information

Item Value
RNA id NM_001124699.2
length 1729
RNA type mRNA
GC content 0.45
exon number 3
gene id c-myc
representative True

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 36532933 ~ 36535742 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGTCATCCAACATCACGAGCAAAAAGAGCTGTTATGCATGCTTCTCAGTCAGCCACTTTAATAGGAAACTAACATCTCCTTATCACACACGCTGGCAAGGATTAATTTGACTGGCTTGTTTGGAATACTTCTCACAATCTACGTTTTTGAGTTCGTGAATTGACCTCCACTTTGTTTTACAAACGCAAGGAAAGAGCGACAATGCAGCTATATTCAAGTTTGGCAAGTAAAAACTACGACTACGATTCTATTCAGCCATATTTTTATGTTGACAACGAAGATGAGGATTTTTATCACCAGCAACAAGGACAACTTCAGCCACCGGCTCCAAGTGAGGACATCTGGAAGAAATTTGAGTTGCtgcccactcctcctctctccccgagTCGGCGACCATCACTGTCTAGTCTTTTCCCTTCAACTTCTGACCAACTCGAAATGGTGACTGAGTTTCTCGGGGATGACGTTGTAAACCAGAGTTTCATCTGCGATGCCGATTACTCTCAAACCTTCCTCAAGTCTATCATCATCCAGGACTGTATGTGGAGCGGGTTCTCGGCTGCAGCCAAGTTGGAAAAAGTGGTGTCTGAAAGACTCGCCTGTCTCCAAGCTGCTAGGAAAGAACCAGCTTTTAGCGACAACGCGGAGTGGACTACTACTCGGTTGAACGCAAACTACTTGCAGGATCTGAACACATCCGCGTCCGAATGCATTGATCCCTCAGTGGTCTTTCCCTACCCAATAACTGATACTTCCAAATCAAGCAAGGTGACACCACCCACGGATTTGGCATTGGACACCCCACCcaacagcagtagtagcagtggtagtgaCTCAGAATATGAGGAGATAGATGTCGTGACTGTGGAGAAGAGGCACGCAGAGAAGCGGTGCGACCCCAACATGTCTGGGACCAGACATCACAGTCCCCTTGTGCTGAAGAGGTGCCATGTCTCCACCCACCAGCACAACTACGCAGCTCACCCCTCCACGCGGCACGAGCAGCCAGCTGTCAAGAGGCTGAGGCTAGAGAGCAGTAACAGTGGCAGCAGCAGCCGGGTCCTCAAGCAGATCAGCAGCAACCGCAAATGCCCAAGTCCCTGGGCGTCAGACACTGAGGACTATGACAAAAGAAGGACTCATAATGTACTGGAGCGCCAGCGGAGGAACGAGCTCAAGCTGAGCTTTTTCGCTCTACGGGACAAGATACCGGAGGTGGCTAACAATGAAAAGGCAGCCAAAGTGGTCATCCTGAAGAAGGCTATAGAGTGTATTTACAGCATGCAGACAGACGAGCAGAGACTAGTCAACTTCAAAGAGCAGCTAAGGAGAAAAAGTGAACATTTGAAACAGAAGCTGGCCCGGTTGCAGAACTCTAATGTTTGAGATCAAAGCGGCATAGACTTTTTGACCTTATCGTTATTAATGCAAGTTAAGACATGGCGTGTATAGTTGATATtgcatggagaaaaaaaaatgggAGTCTTTTTGATTTAAATGTTGAACTGCCTTAATTGAATTATCGGCAGTAAAATATTTTATTAAGAAAATATGAAAATGGGGTACATGTGTTGCATGCCCGACCTAAAATATGAATGTTTTGTATATAATTACTGAGTATTtcctaaaaatgtatttttggatCTCAATTGTCAGGAAGTTCAGGCAGTATATGGGTTTACATATGTTCCTCGATTCATTTGAAATATAAATGCATTTCTTAACACTC

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0046983 protein dimerization activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1107965 lncRNA upstream 181082 36289914 ~ 36351851 (+) True G972749
TU1107958 lncRNA upstream 230024 36302097 ~ 36302909 (+) True G972742
TU1107960 lncRNA upstream 237237 36292387 ~ 36295696 (+) True G972744
TU1107957 lncRNA upstream 241425 36290910 ~ 36291508 (+) True G972741
TU1107938 lncRNA upstream 280149 36252580 ~ 36252784 (+) True G972727
TU1108698 lncRNA downstream 297053 36832795 ~ 36833926 (+) True G973455
TU1108871 lncRNA downstream 549100 37084842 ~ 37086656 (+) True G973611
TU1108922 lncRNA downstream 595163 37130905 ~ 37134701 (+) True G973659
TU1108985 lncRNA downstream 695943 37231685 ~ 37231898 (+) True G973716
TU1108990 lncRNA downstream 701052 37236794 ~ 37237025 (+) True G973721
XM_021620751.2 mRNA upstream 43421 36475502 ~ 36489512 (+) True LOC110535639
XM_036935370.1 mRNA upstream 71032 36344726 ~ 36461901 (+) False LOC110535637
XM_021620750.2 mRNA upstream 71032 36344727 ~ 36461901 (+) True LOC110535637
XM_021620745.2 mRNA upstream 266859 36255223 ~ 36266074 (+) True LOC110535634
XM_021620744.2 mRNA upstream 299539 36231115 ~ 36233394 (+) True sox17
XR_002475488.2 mRNA downstream 9656 36545398 ~ 36584763 (+) True LOC110536619
XR_005034810.1 mRNA downstream 171710 36707452 ~ 36707506 (+) True LOC118937471
LOC110535645 mRNA downstream 292739 36828481 ~ 36829107 (+) True LOC110535645
XR_005034621.1 mRNA downstream 380439 36916181 ~ 36945862 (+) False LOC110535646
XM_036935382.1 mRNA downstream 380439 36916181 ~ 36945953 (+) False LOC110535646
TU1107936 other upstream 282347 36249973 ~ 36250586 (+) True G972725
TU1105524 other upstream 2010593 34517826 ~ 34522340 (+) True G970489
TU1105305 other upstream 2352885 34179703 ~ 34180048 (+) True G970283
TU1105066 other upstream 2361946 34163816 ~ 34170987 (+) True G970054
TU1104738 other upstream 2737872 33794375 ~ 33795061 (+) True G969752
TU1109131 other downstream 1006354 37542096 ~ 37543202 (+) True LOC110535658
TU1109202 other downstream 1115396 37651138 ~ 37679368 (+) True G973918
TU1109337 other downstream 1295779 37831521 ~ 37835335 (+) True lztfl1
TU1109354 other downstream 1484707 38020449 ~ 38038711 (+) False LOC110535015
TU1109353 other downstream 1506964 38042706 ~ 38043330 (+) False LOC110535015

Expression Profile