RNA id: XR_005034810.1


Basic Information

Item Value
RNA id XR_005034810.1
length 55
RNA type mRNA
GC content 0.38
exon number 1
gene id LOC118937471
representative True

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 36707452 ~ 36707506 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAACATTTTCTCTTTTAGTATTTCTCtagtaggtttcctcaaggagaaagccgtc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1107965 lncRNA upstream 355601 36289914 ~ 36351851 (+) True G972749
TU1107958 lncRNA upstream 404543 36302097 ~ 36302909 (+) True G972742
TU1107960 lncRNA upstream 411756 36292387 ~ 36295696 (+) True G972744
TU1107957 lncRNA upstream 415944 36290910 ~ 36291508 (+) True G972741
TU1107938 lncRNA upstream 454668 36252580 ~ 36252784 (+) True G972727
TU1108698 lncRNA downstream 125289 36832795 ~ 36833926 (+) True G973455
TU1108871 lncRNA downstream 377336 37084842 ~ 37086656 (+) True G973611
TU1108922 lncRNA downstream 423399 37130905 ~ 37134701 (+) True G973659
TU1108985 lncRNA downstream 524179 37231685 ~ 37231898 (+) True G973716
TU1108990 lncRNA downstream 529288 37236794 ~ 37237025 (+) True G973721
XR_002475488.2 mRNA upstream 122689 36545398 ~ 36584763 (+) True LOC110536619
NM_001124699.2 mRNA upstream 171710 36532933 ~ 36535742 (+) True c-myc
XM_021620751.2 mRNA upstream 217940 36475502 ~ 36489512 (+) True LOC110535639
XM_036935370.1 mRNA upstream 245551 36344726 ~ 36461901 (+) False LOC110535637
XM_021620750.2 mRNA upstream 245551 36344727 ~ 36461901 (+) True LOC110535637
LOC110535645 mRNA downstream 120975 36828481 ~ 36829107 (+) True LOC110535645
XR_005034621.1 mRNA downstream 208675 36916181 ~ 36945862 (+) False LOC110535646
XM_036935382.1 mRNA downstream 208675 36916181 ~ 36945953 (+) False LOC110535646
XM_036935381.1 mRNA downstream 208675 36916181 ~ 36945961 (+) False LOC110535646
XM_036935380.1 mRNA downstream 208675 36916181 ~ 36946510 (+) False LOC110535646
TU1107936 other upstream 456866 36249973 ~ 36250586 (+) True G972725
TU1105524 other upstream 2185112 34517826 ~ 34522340 (+) True G970489
TU1105305 other upstream 2527404 34179703 ~ 34180048 (+) True G970283
TU1105066 other upstream 2536465 34163816 ~ 34170987 (+) True G970054
TU1104738 other upstream 2912391 33794375 ~ 33795061 (+) True G969752
TU1109131 other downstream 834590 37542096 ~ 37543202 (+) True LOC110535658
TU1109202 other downstream 943632 37651138 ~ 37679368 (+) True G973918
TU1109337 other downstream 1124015 37831521 ~ 37835335 (+) True lztfl1
TU1109354 other downstream 1312943 38020449 ~ 38038711 (+) False LOC110535015
TU1109353 other downstream 1335200 38042706 ~ 38043330 (+) False LOC110535015