RNA id: XM_036935379.1


Basic Information

Item Value
RNA id XM_036935379.1
length 4212
RNA type mRNA
GC content 0.53
exon number 24
gene id LOC110535646
representative True

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 36916181 ~ 36946510 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGGGTGACATAACTTCAAACCCCTTTGCAGAATCTGGAAGAATCGTCGGGGCTCGTGCCAACCACAAGACAAGAGATATCAATTATGTAAGAAGAGGAgacgttttattatgtttcatTGTGGGAAATACATGCAAACAGTGGCATTTAATCCCCCAACAACAGTAAAAACCTTCGCGTGGGAGAAGAACGTGAGCCACTGCCAACTAACTTGCATCAGCTGGGGTTGAATGGCTGAGTGCTCAGTCACAGACTCTCTGGATTTTAATCCAGATGGGCCTTCATCACGACAGAAACAAAACCAACACCAGTCCAGGAGGGGTCGAGCCAGAGTGGACCACAACCGTACTTGGAGTAGTCCTAATAATTATGTCCCACTGCCGCAGCAACAGCAAGACCATTTTCACCATGGGGTCAAATCATCTCATGACAATGTCCTAGTAAACTTCCATCCTCCTCCCCACCACAGAGAGGATGTACAGAGGGGTCGAGGAAGAGGGAGTAATGGAAGTTGTGGGGGAGGTGGCCGGGGCTCAAGGGGCCGGAATCCGAGGTGGAATAGGCCTGGGGTTGAAATTGGCACTGGGCCCCTTGGCTTACCTGGGGGCCACCATGGACTGGTTGGTGGAGGCTACAGGCCTGGAACACTCCACATGGAGAGGGGACCCCCCATTGACGGGCCTAGCTGGCGTCGAGACCCTGGGGGCCGGGGGGGAGAGGTGGGGCCTGCCCACGAAGACCACCAGGACACCCGGCCTAAAAAGCCCCGGAGGTTCAGCCAGGAGccacggagaggagagaggagctctAAAGGACCTCCTCACTCTCTGGACAAGCAGGAGAACCAGGAAAACCATGCtacaggaggagggggaggaggctgGGATCTGGTTGAGCCCAGAGAAGAAACCCGATCATTAGAAATTGGAACCAGAAACCGTAAAGGCGGTAGGACCGAGGACAGGAACCCCCATGTTGACCCTCGAAAGAAATTCCAAGAGCCAAAGCGAAGCCAGGGGCCGATCAAAGAATATCCCCAGGAGAGGAAGGAGCCTGAAAGGGGAGCCAGCGGCAGAGACATCCTCCCTGCCCATCATGACAAACTGGGCCCCAGCACTGAAGAGCCCAACTGGAGCGGTCAGGGGAAATGCACCCCCCTGCAGGACAGAGGCCAGAGGAGAACACCCAAATATGACTACAGGCCTGGGCAGAAGAGGGGGGACAACAACATGCCCAACAAGAGCAAGGAGacacagacaggTTGCCTGATTGAGCAGCTGTCCGAGGAGAAGTATGAGTGCATGGTGTGCTGTGAGGTGATCAGGGTGATGGCACCTGTCTGGAGCTGTCTCAGCTGCTTCCATGTCTTCCATCTCAACTGCATCAAGAAGTGGGCCCGCTCCCCAGCCTCACAGGCAGATGAAACAAATGATGGGTGGAGGTGTCCAGCTTGTCAGAATGTTGTCTTCCAACCCCCAAACACCTACAAGTGCTTCTGTGGCAAAGTGACCAACCCGGAGTTCCAGCGTAGCGAGATCCCACACAGCTGTGGAGATATGTGTGGGAAGAAGAGGAGCGGAGCAGACTGCAAGCACCCCTGTAACATCTTGTGTCACCCCGGACCTTGTCCACAGTGTCCTgcctttgtcaccaaagcctgcATCTGTGGAAGAACCAGTCAGCCAATGCGGTGTGGCCAGGCCACTGCCATCCACTGTGACAAGCAGTGTGACTTGATCCTCAACTGTACCGAACACACCTGCACCCAGGCGTGCCACAGCGGACTGTGCCAGCCGTGCCAACTACAGGTCCAGCAAGTGTGCTTCTGTGGCGTTGTCTATCGGGAGGTGCTGTGTGGGACGGATAAAGACTGCTTTGACGGCTCTGGACACTTCTCCTGTCAGAAAGCATGTGGCAAGATGTTGGACTGTGAGGCCCACCGATGCAAGCAGGTGTGCCACCGTGGGCCGTGCCAGCCGTGCCCACGCTCCCCCAGGCTGGTGAGGAATTGCCCCTGTGGGCAGACGGCCTTGGCCAAGCTCCTGGAGCTGGGCTACCCTGAGCGCCGCAGCTGCTCTGACCCCATCCCTTCCTGTGGCAAGACCTGCAACAAGCCCCTGCCCTGTGGATCCAATGAGACCATCCACATCTGTGAGAAGCTGTGCCACGAGGGCTGCTGTGGCCCCTGCACACTCACCTCCACCATCAAATGCAGATGTGGTTCGAAGATCAATGATGTTCCCTGTGCAACCATCCAGAATGAAGATGGACTGATTTTTACCTGTGAGAAGCGCTGCCTAAAGAAGCGCTCCTGTGGCCGACACAAATGTGGCGAGCTGTGCTGTGTGGGTGTGGAACACACATGCTCTCTGGTCTGTGGCTACAAGCTCAACTGTGGCCTCCACCGCTGCCAAGAGCTCTGTCACCGTGGGAACTGCCAACCCTGCTGGCAAACCAgTTTTGATGAGCTGGCGTGCCACTGTGGGGGGACTGTCCTATTCCCCCCAATCGCCTGTGGCACCAAGCCCTTAGAGTGTAAGAACCTGTGTACCAGGAGGCACAAGTGTGACCACCAAGTGTTCCATAATTGCCACAGTGAGGAGAAGTGCCCACCCTGTACTTACCTCACTCAGAAGTGGTGCATGGGAAAGCATGAGCGAAGGAGCAACATTCCGTGCCACCTGCAGGACATCTCCTGTGGTCTGACCTGCAACAAGGTGCTGCTGTGTGACCTCCACCGCTGCCGCCGCATCTGCCACCGGGGAGAATGTCTGGCCAAAGGCGCCTGCCGCCAGCCCTGTGTGCTGCCCCGTGCCGACTGTGGCCACCCCTGCAACGCCCCTTGCCACAAGGGCACCAGTTGCCCGCGCAACACCTGCGCTGCCAAGGTGGCGCTACAGTGTGACTGCGGCCGGAGAAAGGAAACGGTAGTGTGCACGGAGGCAGCCAGTGCCCATCAGAGGTATGCTGCCATTGCCATGGCCAGTAAGCTGTCTGACATGCAGCTGGGTGACTCTGTAGACATCGGTCTAATCACTAAGAAGGAGATGAAACAGGCCAAGTTGGAGTGTGACGAAGGGTGTGCTGCACTGGAAAGGAACAGGCGATTGGCTGTGGCCCTGCAGAGTTACCCTTCAGTGGACCCCTTCAACATccgcacctcctcctccacttatAGTGACAGCCTCCGAGGAGATGCCAGAAAAGATTTGAAGTTTGTCAGCGAGGTTGAAGAGGAGATCAAGAATCTGGTTGAGTTGGCCAGCAAGGGTAAACTGTCCAAGAGGAGCCACTGCTTCCCCCCAATGAACAGAGAGCACAGGAAGATAGTCCACGAGCTGGCTGAGGTCTACAACGTAGAGAGCGTGAGCTACGACAGCGAACCCAAACGCAACGTGGTTATCACCGCCATCAGGGGGAAGTCTGCCTGTCCTAACTCAACACTGACGTccctgatagagagagatacaggagtCTCAAGGGCTCCCCCACCCATTGCACATATCAAACAACATAGCAAGACTGATGGTGTGAGCAGCTGGTCCAAGGCAGTCAAAGAAGAGCCGGCAATCGACTACTTCGATGTCCAGGATTAATAAAGGCCCAAAACAAGCAAACCTCGACGTAATAATACTAAATAATGTATCTGCTGCTCCAAGATGGTCTGAAATCTGTAATGCCATCTCACCTCATTTGTTGTGCTTGTCTTCAAGAGAAAATATCACTGCAGTACTATTTTAGTTTTGTAACCAAGTAAAAAGTGTTTAACTGCCATATGCAAATAGCATGAGCAAATCTCCAGACTTTGAAAATAATCATGGATTGCATTTGAATAGTTAACAATTTTCACTAGTTCCTAAAGTGCAACTGTTGTATTTGACGAGGGGACACGCAATACCTTATTTCAATAAAGCAATGTTTCAATAGTGTTGATACTTGACTTACCAATATAATGCAGAGAACCTGTATTGACATTGTTACAAATGCTATAAAATAAAACCACAAgataatacataatataataatCAGGTATTTTTTTTATGAAAGGCTCATTACGTTCTGTAAGGTTCTTTAAAGTTTGTTTGGGTTCTTTTGGCCATGATCAATTAGGTTGCATTTAACTATCAACATTATGATGCACAGGTGATGAAAGGGGCTGTATCATACAGACCATATATATtttctgaacaaaaaaataaacgcaacatgtgaa

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0003676 nucleic acid binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K12236 NFX1; transcriptional repressor NF-X1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1108698 lncRNA upstream 82257 36832795 ~ 36833926 (+) True G973455
TU1107965 lncRNA upstream 564332 36289914 ~ 36351851 (+) True G972749
TU1108871 lncRNA downstream 138332 37084842 ~ 37086656 (+) True G973611
TU1108922 lncRNA downstream 184395 37130905 ~ 37134701 (+) True G973659
TU1108985 lncRNA downstream 285175 37231685 ~ 37231898 (+) True G973716
TU1108990 lncRNA downstream 290284 37236794 ~ 37237025 (+) True G973721
TU1109047 lncRNA downstream 401949 37348459 ~ 37445700 (+) True G973772
LOC110535645 mRNA upstream 87076 36828481 ~ 36829107 (+) True LOC110535645
XR_005034810.1 mRNA upstream 208677 36707452 ~ 36707506 (+) True LOC118937471
XR_002475488.2 mRNA upstream 331420 36545398 ~ 36584763 (+) True LOC110536619
NM_001124699.2 mRNA upstream 380441 36532933 ~ 36535742 (+) True c-myc
XM_021620751.2 mRNA upstream 426671 36475502 ~ 36489512 (+) True LOC110535639
XM_021620765.2 mRNA downstream 745 36947255 ~ 37051375 (+) False LOC110535649
XM_021620770.2 mRNA downstream 747 36947257 ~ 37051375 (+) False LOC110535649
XM_021620762.2 mRNA downstream 29044 36975554 ~ 37051375 (+) False LOC110535649
XM_021620768.2 mRNA downstream 29045 36975555 ~ 37051375 (+) False LOC110535649
XM_036935383.1 mRNA downstream 29045 36975555 ~ 37051375 (+) False LOC110535649
TU1107936 other upstream 665597 36249973 ~ 36250586 (+) True G972725
TU1105524 other upstream 2393843 34517826 ~ 34522340 (+) True G970489
TU1105305 other upstream 2736135 34179703 ~ 34180048 (+) True G970283
TU1105066 other upstream 2745196 34163816 ~ 34170987 (+) True G970054
TU1104738 other upstream 3121122 33794375 ~ 33795061 (+) True G969752
TU1109131 other downstream 595586 37542096 ~ 37543202 (+) True LOC110535658
TU1109202 other downstream 704628 37651138 ~ 37679368 (+) True G973918
TU1109337 other downstream 885011 37831521 ~ 37835335 (+) True lztfl1
TU1109354 other downstream 1073939 38020449 ~ 38038711 (+) False LOC110535015
TU1109353 other downstream 1096196 38042706 ~ 38043330 (+) False LOC110535015

Expression Profile