RNA id: XM_021620769.2


Basic Information

Item Value
RNA id XM_021620769.2
length 4475
RNA type mRNA
GC content 0.48
exon number 14
gene id LOC110535649
representative False

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 36947255 ~ 37051375 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGCAGCCAGTCACACCGCATGCCCTTATCTACCAATGGAATGGAATGCAACAGCTGTGGCAGGGGTCCGCCAGGGGTGGGCCGGCTCAAACCCCCCTGCCGGggcccccactccccctctccacagGGCTTCTACTCCTGAAAGGCAGCTCAACTAAAAAGTGTGCTCTGAGACAGAGTGGGCGCCTCGACAGGGCTGCACTGCAAAAACacagagggggggaagagggttgagagagaacGAAGGGGAGCGACAGAGTCAGGGACGGCGCTAGAAAAGGAGAGCACAAAGAGGAGGAAAGTGAAGCGAGGGAGGGGATTTGAAAGCTCGggtgaaggggaagagagggagagggaaagacaaAAGAAAGCGAGGGAGACGTAGTAGGAGCAGGGGGAAGCGAGGGGACGGCGCAAATGGCTATGGAGGACACGGCGGGGGGAGCGCGCAAAGCCACCAAGAGCAAACTGTTTGAGTTCCTGGTCCATGGAGTGCGTCCTGGAATGCCATCTGGAGCTAGGATGCCCCACCAGGGTGCCCCCATGGGCCCCCCCGGCCCCCCGTACAGTGGGAGCCCTACGGTGCGGCCCGGCCTGCCCACCCCGGTCATGGAGCCCAGCCGCAAGAGACCTGCCCCCTCCCAGCAGAACCAGCAGCAGCAGAACGTACAGAACCGGGCCAGAAAGAAGCCAGTGGGATTCCCTGGAGCCAATGAGATGCCAGCGAGGCAGATGGACATGAGAGATGCCCAATCAGATCCAACGCTCGGATCAAAcgCCAAGAGAAGGAAAATGGCAGACAAGATTCTCCCACAGAGGATCCGTGAGCTGGTCCCCGAGTCACAGGCTTACATGGACCTGCTGGCCTTCGAACGTAAACTGGACCAGACCATCATGCGTAAACGGGTGGACATCCAGGAAGCCCTGAAGAGACCCATGAAGCAAAAGCGTAAACTGAGGCTGTACATCTCCAACACCTTCAACCCTGCCAAGCCCGACGCTGACGACTCGGATGGCAGTATTGCATCATGGGAGCTGCGGGTTGAGGGGAAGCTACTGGATGATCCTGGGAAGCTGAAGAGGAAATTCTCCTCTTTCTTCAAGAGCCTGGTGATTGAGCTGGACAAAGACCTATACGGTCCTGACAACCACCTTGTAGAGTGGCACCGCACTCCCACCACCCAGGAGACGGACGGCTTCCAGGTGAAGCGGCCAGGGGACGTGAGCGTGCGCTGCACACTGCTGCTAATGCTGGACTACCAGCCCCCACAGTTTAAACTGGACCCTCGTCTGGCTCGGCTGCTGGGTATCCACACCCAGACCCGCTCCTGTATCATCCAGGCCCTGTGGCAGTATGTCAAGACCAACAAGCTGCAGGACTCCCATGACAAGGAGTACATCAACTGTGACAAGTACTTTCAGCAGATCTTTGACTGCCCGAGGCTCAAGTTCTCGGAGATACCCCAGCGTCTCACCAACCTCCTCCTGCCCCCTGACCCCATCGTCATCAACCACGTCATCAGTGTGGACCCTAATGACCAGAAGAAGACGGCATGCTATGACATTGACGTGGAGGTGGAGGACCCTCTGAAGAGCCAGATGAGCAGCTTCCTGCTCTCCACCGCCAACCAGCAGGAGATCGCCTCATTGGACAAcaagATCCATGAGACCATTGAGTCCATCAACCAGTTGAAGATCCAGAGGGACTTTATGCTCAGCTTCTCCAGGGATCCTAAAGGCTACATCCAGGACTGGCTCAAGTCCCAGAGCAGAGACCTGAAGATGATGACAGACGTGGTGGGGAacccagaggaggagaggagggcggCGTTTTACCACGAGCCCTGGTCCCAGGAGGCCGTCAGTCGCTACTTCTACTGCAAGATCCAGCAGAGGAGACAGGAGCTGGAGCAGGCCTTGGCCGTGAGGAACACCTAAACGCCATCTCGGACGTCACGCTGCACTCTTCATCTGACCCCAGacctgtgtttttattttatttttatgcttTCTTCacattactgtagtactgtgACCCGTGGCCTCTGACCCATCCCCAATCGCatgtatctaaaaaaaaaaaaactttaacaaTCTGTTCATCTCTGATGGACATGACCGGGcatctctctccacactcctgGAATCCCAGGCCCACAGTTGGTTACTTTTAATGTCACCCACTAGCATGTCAGTCTTTCCATAGAGACTACAAGTCATTGTACCAGCTGCCTGCAGAATGATCAGTGTCTTGGATCCTTCTCATCTCAACCAGATGGACTGAATCCAAAAGTACTGTACATAATCAAACGGTCATAATGGTCCACTGCATCTCATTCATGAGTCCAAAGTGGCTGTTTGTAACCTAATGTTTCAAGTGTCTTGACTCACACACCGTTTGGATTGTGtccatttgtttttagtgtatCATTATCTGTATGGTTCATgtgagccgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtggaaccaAATGAACACCAGCGGAATGAAGATTACAGTATGAAGTAATGGGTCGTGGGACTGGGCTCATTTCTCTTCTGAAGCCCAAATGTTGATGTCTGTCATTTTAAAACATGAATTTGTTCAAGGTAGGCAGCTTTCATGAATTAGATTTGCCCTCATTATAAACTAATCTAAAATGCAATCTTAAGATTAGCTTAATTTCGTTCAACTTTCTTCTGTAATTTACTTAAaacaatgtaacagtataagtaGATCTCTGTATTAGTCAATATGTATTTCAGCAGATTGTTAAAAGGGACAATGACAATTAACACCAATATCTGCTGGCTGTAGAAAGGATAGATGGTGACAGGATGAGTAAGCGCAAGGTGAAGTACTGTGGTAACACTTGGCAGCCATAGCGTGGAGCCTTGGAGTCAGTACACCCTGTATGCTTTTACACAGACTAGCTCTCTGTAAGAAAGCACCCAGACGGACTTGTCGCAGCAAATTGCCATGCAAATGGATTAGCTTTAGTGGTTAATTGTTTGTGCTGCTTCATTGTCCTGTCATAATAACGCTACAAAAGTCATGTCTGGGAACAGTATTAGCTACAGATCTCTCCCAATACTCAAGCCAGTGTTTTTAATATTAACAATGGACACATTTTGGAATATGATGTAACCAACACCATTTCCTATGTTGAACAATCATGGGGCGGGCAGTGAAGCTTCAGCCACAACATCTGTACATTGCCTGCTGTGAAAATTGTTGGCCGGTAACTAATTCTATTATTTGAAATGAATGAAGAAATGGGTCtttgttcattgtattttttttagtTAACATCTATTGTGAACTACCTGTCCCAAATGGATCTGTCTGACAGTATTTTGTCCTTGACCATTTTGACGGAGTCACCAAAGGTCTCGATAAAAGAGTATTATACTAGTTAAAATAGACAATGAACAATGGTTACTGTGATTTTGTCTCAGCTCGATAAAGCTATGTTACCAGTTGAAACTGAAGGTTGAATATGAAGACATTTTTAAGGGATATGTGAATGTAAATATCATTTTTTTCCCCTTGATGGCAACTGTACAGCCTACAGTCTGTTTGTGTGTTTCGTTTAGGGAACGGCGGGACATATGGGGTGGGAAGGATTGGGTTTCATATGTTTAAAGCTGTAGGACAGGGATGCTAGTGTCCCTCTATGTACACTTGGGGGGGGGGATTTTAGGTCCTTGTTGAGTTTTAATGGGGCAGAACCATAGAATTGAATGCTGGGAGTGATGATGCCTCTATCTCGCTACATACAAGGCTTGCTCATCTCTAACTACCACAGCAACTCCGTTCTGTGCCCTTCTAGTTTTGTGTGTCATGGGAGAAACCTTTTCAGTTTCTGATTTGAAATCGACACGGCTGTCTTCTGTAACGTTCAGACTTGTGTCCTTGTTACATTTGTTTTGTGTCAAGATTCTCTTCAACATGGCTGAGGGCTCCTATACTCAACATAAAGAGGTTGCATTTCATAAAGACCTAGGCATGCTGCATGGACAGGTTTTATACATTTCAAACAGGACATGTAAATACCCTCATGAATGCATGGAAGCGGATCTGAAGAGCACTGGATTTGAGACAATATCTTTTGTGAATGGGGCCTTTTTCAACCATTTGCTAAAAACCTGTATGCTACCCAGGCAGCATAGATGTTATCTGCATATGAGAGTTTTTGTCACTACAGGTTCCATGTATGTCAACTTCACCAATCAAGGGAGCATACTAGTTGTTGTATTCAATTGTGTCAATCGATACTTGTTTGACCCAGATGTTCTTGTATGTTTGGCAGTCATGGAGCATCTTTGACTGTTGGGCACCCCTTGCTGGGCATTCTAGAAACTACAACTCACTGACACCCTCTGTCTGACAATGGAAACCTATCATTTGACTAATTATAAAAAGACTGTACTTAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1108698 lncRNA upstream 141641 36832795 ~ 36833926 (+) True G973455
TU1107965 lncRNA upstream 623716 36289914 ~ 36351851 (+) True G972749
TU1108871 lncRNA downstream 33467 37084842 ~ 37086656 (+) True G973611
TU1108922 lncRNA downstream 79530 37130905 ~ 37134701 (+) True G973659
TU1108985 lncRNA downstream 180310 37231685 ~ 37231898 (+) True G973716
TU1108990 lncRNA downstream 185419 37236794 ~ 37237025 (+) True G973721
TU1109047 lncRNA downstream 297084 37348459 ~ 37445700 (+) True G973772
XM_036935380.1 mRNA upstream 29057 36916181 ~ 36946510 (+) False LOC110535646
XM_036935379.1 mRNA upstream 29057 36916183 ~ 36946510 (+) True LOC110535646
XM_036935381.1 mRNA upstream 29606 36916181 ~ 36945961 (+) False LOC110535646
XM_036935382.1 mRNA upstream 29614 36916181 ~ 36945953 (+) False LOC110535646
XR_005034621.1 mRNA upstream 29705 36916181 ~ 36945862 (+) False LOC110535646
XM_021620778.2 mRNA downstream 63750 37115125 ~ 37222524 (+) False LOC110535651
XM_021620774.2 mRNA downstream 63755 37115130 ~ 37222524 (+) False LOC110535651
XM_021620776.2 mRNA downstream 123485 37174860 ~ 37222524 (+) False LOC110535651
XM_021620779.2 mRNA downstream 148760 37200135 ~ 37222524 (+) True LOC110535651
XM_021620780.2 mRNA downstream 173643 37225018 ~ 37226545 (+) True LOC110535652
TU1107936 other upstream 724981 36249973 ~ 36250586 (+) True G972725
TU1105524 other upstream 2453227 34517826 ~ 34522340 (+) True G970489
TU1105305 other upstream 2795519 34179703 ~ 34180048 (+) True G970283
TU1105066 other upstream 2804580 34163816 ~ 34170987 (+) True G970054
TU1104738 other upstream 3180506 33794375 ~ 33795061 (+) True G969752
TU1109131 other downstream 490721 37542096 ~ 37543202 (+) True LOC110535658
TU1109202 other downstream 599763 37651138 ~ 37679368 (+) True G973918
TU1109337 other downstream 780146 37831521 ~ 37835335 (+) True lztfl1
TU1109354 other downstream 969074 38020449 ~ 38038711 (+) False LOC110535015
TU1109353 other downstream 991331 38042706 ~ 38043330 (+) False LOC110535015

Expression Profile