RNA id: XM_021620780.2



Basic Information


Item Value
RNA id XM_021620780.2
length 908
RNA type mRNA
GC content 0.43
exon number 4
gene id LOC110535652
representative True

Chromosome Information


Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 37225018 ~ 37226545 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


AATCCCTCTCCAAAAACACATTCGAGGCTCTTTCCCTTTTGTTTGTCTGAGTTAGTGTTCCTCCCTGTAGTGGAGTGGGTGGTCTTCATACAGAACAATAACCTCAGTCAGGCTGCTCCGCACACACTGGGAGGAAGATGGCTGCTCTACTACTGCTGTTGTTGGTTAGTGCTGGAGTCCTGCTGTCTTCTACTGAGGCTCAGGAGGCTTATAATAAACTCCCCGATAACTACAGGAAAGGAGTGGATCTGGCTCTGCAACAACTCAACTCTCACGCTGGAGTCAAACACCATTTTCTCTTCTTCAAGAGTCTCCTGAAGTCCGACATAGAGTCTGGATTTGATGTGAGCTACATTTATCACAGCTTCTACCTGAAAGCCACCAAGTGCCCAAAGGGAACGGTTGACTCCACGCAATGCAAGTTCAGGAATGACCGACCATTGATAGACTGTTCAGTCTGCTACAAAACCTTTGCTGGAGAGATTGAGAAGGATCCAAAACCGTATATCCACTGTGTCCACAAACCAGCACTTACAGAGGATATGATGACAACAAGAGTAGAACACTGTAATACAATGAGTTACCACAGTGGAGCCCCTACTCTCCTGGCTTCAAAATCTTAAAGTGAAAAGGGGCCATGTTAGTTCTGTGCCATGACGAAATAATGCTATTGCACAATACATCTGGATTTAGTCTGGAAAGAGAGCCTAATTTTGTCTGTATTCTGTGTTCATTATTCTGTATTCACCTTCATACTATTTCTAATTACTTTAAACACGCTTAGGCTTGAGCTCCAAGTGTTCACTTCATGCATGCTACGTTCGTGTTTCCTATTCCTCTACCTCTGCAATATCCCAGTTGAATGTGGTACATTTATGTTCAATAAAGTTTTATTCAGAAAAAAATAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1108922 lncRNA upstream 90317 37130905 ~ 37134701 (+) True G973659
TU1108871 lncRNA upstream 138362 37084842 ~ 37086656 (+) True G973611
TU1108698 lncRNA upstream 391092 36832795 ~ 36833926 (+) True G973455
TU1107958 lncRNA upstream 922109 36302097 ~ 36302909 (+) True G972742
TU1107960 lncRNA upstream 929322 36292387 ~ 36295696 (+) True G972744
TU1108985 lncRNA downstream 5140 37231685 ~ 37231898 (+) True G973716
TU1108990 lncRNA downstream 10249 37236794 ~ 37237025 (+) True G973721
TU1109047 lncRNA downstream 121914 37348459 ~ 37445700 (+) True G973772
TU1109096 lncRNA downstream 187687 37414232 ~ 37415622 (+) True G973814
TU1109069 lncRNA downstream 282977 37509522 ~ 37513327 (+) True LOC110535656
XM_021620778.2 mRNA upstream 2494 37115125 ~ 37222524 (+) False LOC110535651
XM_021620774.2 mRNA upstream 2494 37115130 ~ 37222524 (+) False LOC110535651
XM_021620776.2 mRNA upstream 2494 37174860 ~ 37222524 (+) False LOC110535651
XM_021620779.2 mRNA upstream 2494 37200135 ~ 37222524 (+) True LOC110535651
XM_021620763.2 mRNA upstream 173643 36975560 ~ 37051375 (+) False LOC110535649
XM_021620781.2 mRNA downstream 34097 37260642 ~ 37331802 (+) False LOC110535653
XM_036935389.1 mRNA downstream 87722 37314267 ~ 37331802 (+) True LOC110535653
XM_021620786.2 mRNA downstream 109066 37335611 ~ 37360066 (+) False LOC110535654
XM_021620782.2 mRNA downstream 109067 37335612 ~ 37360066 (+) False LOC110535654
XM_021620785.2 mRNA downstream 109067 37335612 ~ 37360066 (+) False LOC110535654
TU1107936 other upstream 974432 36249973 ~ 36250586 (+) True G972725
TU1105524 other upstream 2702678 34517826 ~ 34522340 (+) True G970489
TU1105305 other upstream 3044970 34179703 ~ 34180048 (+) True G970283
TU1105066 other upstream 3054031 34163816 ~ 34170987 (+) True G970054
TU1104738 other upstream 3429957 33794375 ~ 33795061 (+) True G969752
TU1109131 other downstream 315551 37542096 ~ 37543202 (+) True LOC110535658
TU1109202 other downstream 424593 37651138 ~ 37679368 (+) True G973918
TU1109337 other downstream 604976 37831521 ~ 37835335 (+) True lztfl1
TU1109354 other downstream 793904 38020449 ~ 38038711 (+) False LOC110535015
TU1109353 other downstream 816161 38042706 ~ 38043330 (+) False LOC110535015

Expression Profile