RNA id: XM_021620823.2


Basic Information

Item Value
RNA id XM_021620823.2
length 3709
RNA type mRNA
GC content 0.50
exon number 11
gene id LOC110535674
representative False

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 38351571 ~ 38497111 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTCGACCTCTGTGGTGAAGAAGCAAGCTTGCCTGTCactattgacccccccccctatcCACCTTCAATGTCAAATCTCTGTCACCAAAGTGGAGAGAATTACCAAGGCTTTTGTATGCAATCAAGACCAAGGAACAGCAGCACTAGTCCTATACACATCGCTTGACTTTTTCCCTTTTCTACAATCAAAGCTCTCTTCTTCAAGGTTATATCCTCtttgtcttttttattttttggaaAACATTGGGTCAAGAGGACAGTGGGAAGCAGGCCCTGAGGATTTTTACATTTTCTCCTCCACTGTGTGATTTTATTCTCTCCTGTGCTTGGTGCTTGTTGGAGGGGGCATACATGAGGTGGTGTGGCTCAGGAAGCTTGGGGAGAGCAGGAACTCACCTTGCTCTGCTGCTACCCCTCTGGGAGCTGGGCTGCTGGGGGTTGATCTCCGCCCCTGGGGGGCAGAACCAGGCGCAGCACACTACTGAAGGCCCCTGGGAGATGCTTCGCAGGCACAAACGCAGCTGGGTATGGAATCAGTTTTTTGTCCTGGAGGAGTACACAGGCGAAGAACCTCTTTATGTTGGCAAGCTCCACTCAGACGTGGACAAAGGGGATGGCAAGGTGAAATACGTGCTCTCAGGAGAGGGCTCCACCTCCATCTTCACCATCGACGAGAACACAGGTGACATCCACGCCACCAAGCGTCTGGACCGGGAGGAGCAGGCCTATTACACACTTCAGGCCCAGGCCGTGGACCGGAtcaccaacatccctgtggagcCCAGGTCAGAGTTCCTGGTCAAGGTCCAGGACATCAATGACAATGAGCCCAAGTTCATGGACAGGCACTATATGGCCGGGGTACCGGAGATGTCAGCATTGGgaacaatggtggtccAAGTGGCAGCCACAGATGCAGATGATCCCACATATGGGAACAGTGCCAGGGTGGTCTACAGCATCATCAGCGGACAACCCTACTTCTCAGTGGAACCAAAAACAGgcaTCATCCGGACAGCGCTGCCCAACATGGACCGAGAGATGAAAGACCAATACGTTTTGGTCATCCAGGCCAAAGACATGGTGGGCCAGATGGGCGGCCTTTCAGGCACCACCTCTGTCACGATCACTCTCACCGACGTCAACGACAACCCGCCACACTTCTCTCGCAAGAACTATCAGTACACTGTGCTGGAGTCCTTGCCTGTGGCATCCGTGGTGGCCAGGGTCAAGGCTGTGGATGCAGACATAGGCCCCAACGCAGAGATGGAGTATAGGATCATTGAGGACGGACCTGGGTTGTTCAACATCACCACAGATGAGGACACGCAAGAGGGCGTTATCATCCTTCAAAAGCCGTTAGACTTTGAGACCAAGAACAGCTTTAATGTGCGAATCGAAGCCACCAATCGGAACATCGACCCTGCGTTCGTGCACCTGGGTTCGTTCAGCGACACAACGTCGGTCAAGGTGACGGTGAAGGACGTGAACGAGTCGCCTGTGTTCTCGACACAGCTCAGCAGGATGGTGATCTCTGAGGACGCCAAAGTTGGCACCTCCATCGGGAGGGTCTCCGCGCACGATCCGGACACCTCCAACAGTGCCATCAGGTACTCCATAGATAGAAACACAGACCTGGAGCGTATCTTCAATGTGGATGCTCTGAGTGGGGTCATCAGTACTGCCAAGCCCCTGGACCGAGAGGTCAACTCTGTCCACAACCTTACCATACTCGCCATGGAGAGCCAGGATCCAACAAAGATTGAAAAAGGTTTTGTGGCCATCACAGTACTGGACATCAATGACAACGCTCCGGTGTTTGCCATCGCGTATGAGACCCTCCTATGTGAGAATGCAGCTCCTGGACAGGTCATCCAGACCATCAGTGCCGTGGACAAGGATGAGCCTCCCAGTGGTCATCTCTTCTACTTTGCCCTAACTGCGTCTGTGGTTAGCAACAGCAACTTCACTCTCCGAGACAACAAAGACAACACGGCATCTATCGTAACGAAACGTGGAGGGTTTCGTAGACAGGAGCAGATGCTGTATCGACTGCCCGTGTTGATTGTCGACAATGGAAGCCCTGCCCTCAGTAGCACCAACACCTTATCAGTGAACGTGTGTGACTGTGACTCGGACGGTGTGGCCCAATCGTGTGGAGCCATGCCCTACACACTTCCTGCTGGCCTCAGTACAGGGGCCCTGGTCGCAATTCTGGGATGCATCATTACACTGCtggTGATGGTGCTGATGATCATGTCGATGCGTCAGAGGAAGAAGGAGCCATTGattctggaggaggagagggacgtGAGGGAGAACATCGTCCGCTACGACGAtgaaggtggaggagaggaagacacgGAGGCCTTCGTCATGGTAGCCCTCCGCAACCTCAACGTCATCATAGACCCCAAGGTCCGGCGAGACGTCATCCCTGACACCCACACCTTCTTCCCCTACCCAACGTCCTCCTCCTCGCAGCCTGTCCACAATACCCTGCCAGACAATGTGGTGTTCCGAGAGTTCATCTGGGACCGCCTGAAAGATGCAGATGTTGAGCCTTCAGCTCCGCCATACGACTCTTTGCAGACGTACGCCTTTGAGGGGAGTGGCTCTGTAGCTGAATCCTTAAGCTCCTTGGAGTCGCTAAGTACAGACTCAGAGCAGAACTATGACTATCTCAGCACCTGGGGGCCACGTTTCAAGAAGCTAGCCGACCTGTATGGCAACAGCGACGGCAATAGCAATGGTAACAGCATGCTGTCATAGCCAAAACTTTCCTGAACTTACACAACAAATATGTTATGATAGTCTGGGGTGAGAGTCTGTGAAAACAAAGTGAGATAGGAAAAATACAAGTGACTTCAAAGGTTAGGTTTGTTTATGTGCCTTGGATTTTGGATTTTCAAAAGGGGTGACTTGGCAAGTTTTGATAAGTCATTTCAAAAGTGAGTTGACTGAAGAGCAAAAACATTAAAAGGTTTCATAGTTGTGCTGAGGTCCAGCGTACATGATAGGCTACAATATATTTATGTAGAGAAACCTGTTCTCTCAATCCTGACATGGGCACAGACCCAGCAGTCTTGCATTGATGCATTCTCTTGCTCttttcgtttaaaaaaaaaacttttctccTGAAGTGCCCAGTCCCGGCCGGCTAATCGGTAGAGTAGTCACTCAACTATTAATTTGAAAGTCATGAAGagtgtcaatattttgtttttgttctgTGTTTTTCACAGAGactatgaagaaaatgtattaagTCAGACTCACAGAGAAAAAacaatcatcaaatcaaattttattggtcacatacacatatttaacagatgcgggtgtagagaaatgcttgtgttcctagctccaacagtgcagtaatatctaacaaatcacaacaatacacacaaatctaaaaataaaataataaggacaagcaatgttggagtggcattgactaaaatacagtagaatagaatacagtatatacatatgaaatgagtaaagcactATGTAAACAGTATTCAAGTGATTAGCGTTCCATTAttcaagtgaccagtgattccatgtctctGAATATGGGGCAGCAGCCGGCTAGTAAtggttatttaacagtctgatggccttgagatagcggggtgaacaggccattgttacaggtggttgatgtccttgatgacctttttggccttcctgtgacaacggGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1109557 lncRNA upstream 177848 38154323 ~ 38173723 (+) True G974240
TU1109546 lncRNA upstream 208307 38143034 ~ 38143264 (+) True G974229
TU1109494 lncRNA upstream 273208 38077812 ~ 38078363 (+) True G974191
TU1109490 lncRNA upstream 277610 38073627 ~ 38073961 (+) True G974187
TU1109352 lncRNA upstream 305908 38044586 ~ 38045663 (+) True LOC110535015
TU1110814 lncRNA downstream 5649 38502760 ~ 38547774 (+) True G975372
TU1110857 lncRNA downstream 78615 38575726 ~ 38580510 (+) True G975412
TU1111056 lncRNA downstream 149208 38646319 ~ 38646749 (+) True G975600
TU1111067 lncRNA downstream 188571 38685682 ~ 38694642 (+) False G975605
TU1111070 lncRNA downstream 188571 38685682 ~ 38687528 (+) False G975605
XM_036935434.1 mRNA upstream 134313 38199126 ~ 38217258 (+) False LOC110535669
XM_036935432.1 mRNA upstream 134313 38199258 ~ 38217258 (+) False LOC110535669
XM_036935431.1 mRNA upstream 134313 38202443 ~ 38217258 (+) False LOC110535669
XM_021620816.2 mRNA upstream 134313 38209398 ~ 38217258 (+) False LOC110535669
XM_021620817.2 mRNA upstream 134313 38209560 ~ 38217258 (+) True LOC110535669
XM_021620821.2 mRNA downstream 129150 38626261 ~ 38631703 (+) False LOC110535673
XM_021620820.2 mRNA downstream 129366 38626477 ~ 38631703 (+) True LOC110535673
XR_005034790.1 mRNA downstream 336051 38833162 ~ 38834976 (+) True LOC118937440
XR_005034791.1 mRNA downstream 341056 38838167 ~ 38840060 (+) True LOC118937441
XM_021620839.2 mRNA downstream 454181 38951292 ~ 38954226 (+) False LOC110535679
TU1109485 other upstream 288471 38057798 ~ 38063100 (+) True G974184
TU1109353 other upstream 308241 38042706 ~ 38043330 (+) False LOC110535015
TU1109354 other upstream 312860 38020449 ~ 38038711 (+) False LOC110535015
TU1109337 other upstream 516236 37831521 ~ 37835335 (+) True lztfl1
TU1109202 other upstream 672203 37651138 ~ 37679368 (+) True G973918
TU1111560 other downstream 560565 39057676 ~ 39058011 (+) True G976017
TU1113929 other downstream 2270725 40767836 ~ 40768229 (+) True G978255
TU1114082 other downstream 2505965 41003076 ~ 41016088 (+) True G978396
TU1115468 other downstream 3581381 42078492 ~ 42078855 (+) True G979689
TU1115777 other downstream 4031409 42528520 ~ 42533308 (+) True G979965

Expression Profile