RNA id: XM_021620820.2


Basic Information

Item Value
RNA id XM_021620820.2
length 1279
RNA type mRNA
GC content 0.43
exon number 5
gene id LOC110535673
representative True

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 38626261 ~ 38631703 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aatttaattacgcttttttccCCGACGTTTaatgacaccggccatattcaaagCATGTTGATGGTCAGTTATCCTGCGCTCTGCCACGCTCAGACGGGAGTGCTCTGACATCGGAGTAGacagccagagcgaatttacaaaCGCTCCCTTAGATTGAAACACGTTGATGCTGATGTCGCAATCAAACCGCGACAGTTGCCCAGGGAACTTGTCAAACAAAACATTCCAGACATTTGAATGTAGAGCCGGCTAGAGGTGACTAGCTAGCTATTATTTGCTTCTCAGAAAAAAAGTGCATATTCCAGAAATATGTCGACCACTATGTATCCAACAGAAAGTATTTACAACCTTATTCCAAGGGAGGAGGTTAAAATAGAGAAACCACCAAGGTATATGTCAAAGTTTAGGGCACAAGTTAAGCATGAGAAAATGCTGAATAAGCCTACCAACAAGACTATGGGACAAGTAAAAGTAGACTTGCCCTCTCCAGAGAAATATCTGCTCAAGCACTCCAAGGAACCCAAACTTCCTGAAAAGCAACCATTTTCATATTTGGATTATGAGACTTTCAAAAAACCACAAATACCTGCCAAAGCAGACAACCCACTTATGGGCATTCACACCAAAAAGGACTTTGTAAAGACAAACGCCTTTGAGAACATCATGGCAGTGCCAAAAAAGCCACAGCCTATCTATGCCGACACTAAAACTGGAGACAAACAGCTCCTGGAAAATTCAGGACTACTCCCAAAGTACATCAAGAAAAAGGACTTTGGGAAGACCCCTGAGTACTTGCAGCATCGCactgaggaggtgaggagggctCAGGATGAGTATGACAGCTTTGTCAAGGAACACATGAGACAGGGCACCATGAAACAGCTCTCTGAGGATGAGCGAAACAACATCCTACAGGGCTTGAAGATGAACTGGGGGGAGCTGCACCATCAGTACCAGGGACTCTCTGTTGTCACGGACACCACCCCTAAGAAGTACCGCAAGGAGCGTCTGGAGCTGGAGATGAAGCAGCTGGAGAGGGACATTGACCTCATCGAGAGATACAAGACTATATTCATCGCCAACAACTAACACACGACACCTCTTTTCTTTAGTGTCAAATGGCAAATACATTGTAAACAGATATTCAGTGAAGAAAAAAACTACTGCCCTAAATGCTAGATGTGAAATTGTCTGGAAAATAGTCATATAACTCTCATTACCCCTGTCTATGATTTCACTTTGTTTTGGAAAACTAAATAAACTCTGCACTATATTTTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1110857 lncRNA upstream 45967 38575726 ~ 38580510 (+) True G975412
TU1110814 lncRNA upstream 78703 38502760 ~ 38547774 (+) True G975372
TU1110771 lncRNA upstream 200843 38425402 ~ 38425634 (+) True G975330
TU1110760 lncRNA upstream 218288 38407679 ~ 38408189 (+) True G975319
TU1110759 lncRNA upstream 219084 38407180 ~ 38407393 (+) True G975318
TU1111056 lncRNA downstream 14616 38646319 ~ 38646749 (+) True G975600
TU1111067 lncRNA downstream 53979 38685682 ~ 38694642 (+) False G975605
TU1111070 lncRNA downstream 53979 38685682 ~ 38687528 (+) False G975605
TU1111099 lncRNA downstream 53979 38685682 ~ 38696041 (+) False G975605
TU1111105 lncRNA downstream 71228 38702931 ~ 38709798 (+) False G975605
XM_021620823.2 mRNA upstream 129366 38351571 ~ 38497111 (+) False LOC110535674
XM_036935435.1 mRNA upstream 129366 38351571 ~ 38497111 (+) True LOC110535674
XM_036935431.1 mRNA upstream 409219 38202443 ~ 38217258 (+) False LOC110535669
XR_005034790.1 mRNA downstream 201459 38833162 ~ 38834976 (+) True LOC118937440
XR_005034791.1 mRNA downstream 206464 38838167 ~ 38840060 (+) True LOC118937441
XM_021620839.2 mRNA downstream 319589 38951292 ~ 38954226 (+) False LOC110535679
XM_021620837.2 mRNA downstream 319589 38951292 ~ 38954353 (+) True LOC110535679
XM_021620840.2 mRNA downstream 358151 38989854 ~ 39004586 (+) True LOC110535680
TU1109485 other upstream 563377 38057798 ~ 38063100 (+) True G974184
TU1109353 other upstream 583147 38042706 ~ 38043330 (+) False LOC110535015
TU1109354 other upstream 587766 38020449 ~ 38038711 (+) False LOC110535015
TU1109337 other upstream 791142 37831521 ~ 37835335 (+) True lztfl1
TU1109202 other upstream 947109 37651138 ~ 37679368 (+) True G973918
TU1111560 other downstream 425973 39057676 ~ 39058011 (+) True G976017
TU1113929 other downstream 2136133 40767836 ~ 40768229 (+) True G978255
TU1114082 other downstream 2371373 41003076 ~ 41016088 (+) True G978396
TU1115468 other downstream 3446789 42078492 ~ 42078855 (+) True G979689
TU1115777 other downstream 3896817 42528520 ~ 42533308 (+) True G979965

Expression Profile