RNA id: XM_036935454.1


Basic Information

Item Value
RNA id XM_036935454.1
length 3933
RNA type mRNA
GC content 0.55
exon number 24
gene id LOC110535687
representative False

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 39482495 ~ 39520766 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACCTCAAAGAAGAAGAAGCCGGCGTACGTTATACCTGCTCCTTTCGCTGTTAGCAACGAAGAGAGAATCGGAGATAGCTGAAAATCCCGTTTGAGCAAATCGAAAAATAAATTGACCGGAGGTTCAAGTCATTTATTTTTAAAGAGGATAGCTAACTGTTCTATTTTAATAGGCATTACACATACGTTAGCTAGCCTGCTGTTTGCTAAATAAGCTAATAGCTAGCAAGGTCCTCTAAGGTTTTGAATCACATGCGCGAGTAGCTAAACTAACAAGTTGACGTTAGCTTTTTTTAATGACCGCTATCTAGCTCGCTAACATTCTTTTCATAATTTGGTTACAGTGTATAGTGTTTTTGAGATATTAGGAACACACCGCAAACGTTGTCGTTTATGGGATAATGTCAATGAAGCAGGCCGGTGGTAATCGCAAACTCGGCGGTGGTGCTGCCGCTGGGGCCGGACGACAGAATTTGGGCAGGGGACGGCATAGTACCAAAGGTACTTCGGCAGCAGTTGTCTTCAACGGTGTATATGCAAACATGAGGATGGTCCATGTCTTGACATCAGTAGTGGGATCCAAATGCGAACTGAAGGTTAAAAATGGATTGGTTTATGATGGAGTGTTCAAAACATATGGCCCAGAGTGTGACCTGGTCCTCGATGCAGCCCACAGGAAGATCCCTAAACCCAGCGAGGGCCCGCGACAGGAAGACATTGTGGAAAGCATCATCTTCAAGGCTTCTGACGTGGTGGTGGTGCACTTCAGAGACGTGGACCTCAATTTTGCCAGTAAAATCTCTACCGACACAGACAACTTCACGGATACGGCGGTGAGCGGCAGAATCAACGGGGAGCACAAGGAGAAGGACCTGGAGCCGTGGGATGGAGGGGAGCAGCAGCAGCACGTTGTCTCAGGCAGCCTGGAGTCCCTGGACACAGACGTGtCTAATGGATGGGACCCGAATGACATGTTCAAGTACAACGAAGAGCAGTATGGCATCATGTCGACCTACGACAGCAGCCTGTCTAGCTACACTGTTGCCCTGGAGCGGGATAACTCAGAGGAGTACCTGAAGCGGGAGGCACGGGCAGCCCAGCTGGCACAGGAGATTGAGGCCAGCGCCACCTACAAGGCCCGCGTGGCCCTGGAGAACGACGAGCGCACCGAGGAGGAGAAGTACTCAGCTGTGGTGCGCGGAGAGAAGGGAGAGCGTGGAGAGCGGGAGCCACACACACTCAACAGGTGGGTCTCTCTGAGAGAAAACAAGTACATTCCCCCgggccagaggaacagagaggggatGTCATGGGGAGTGGGTCGTCAGAACTCCCCCAAGTTGGTCCAGAGCAGCAGCGGATCTCCGCGGCCAGGTCCCCATGACTACAGCCCCGACCAGCGAGCCGACCAGCGGGTTGTCAACGGAGgcccTCCCAGGATGTCACCGAAGACACAGCGCACCCCACGCACCCACAGAGTTCCCCCTGGGGGTAGAGTCCCTCCGGGAGTAGACTTCATGCCCCACAATGCTCCAGGAGAGGTGCCTGTGCCCCCTCCAACCCGCAGCACCTCTTCCGGTGGCACCTGGTCTTCCGTGGTCAGCGGAGCACACAGGCCTCGCTCCCCTCGGCAGAACAGCATGGGCGGGGCCTCCCCtggctcttcctccctccccttggGCCAGACTGGGACCACCCCCGTAGAACCTGCTACCACGCAGTCAGCCCCATTACCCACTGCTGCTAGCCCTGCCCGGGATATGGCCGCCACTCCCTCAGAGGCAAAAGAGTCTCGGGTCCAGGAGACGAGACAGAACTCCCCTACGGCCAACAAGGAGAACATGAAGCCCCTGGAGAGTCCCCCTAGTATCAGCAGACCCCTCTCTAAAGGACCCCCCTCCATGGCACCAGACCACAGAAAACAAATAGACAACTTAAAGAAATTTAGTGTTGATTTTAGGtTGCAGTCCAGCTCGAACCCAGATCCACAGTTTGAGCAGATGACCAAGCCTCCACCAGATGCCGCGGGAGAGAAGCCCAAGGAGCTTCCTCTGGACAAGGGTTTGGAGGGGTCTGAGGAGGGCAACGTGGCCCCCACCGGGAGCAGCAAGGCAGGCAGCCCTGGAGCaccatcctcctctaccctctgtcCTGCCCCGGAGCAGAAGAAGGGGCCTGACGTGACCTCGCAGGGTGTCCAGACGTCTGCACCCACCTTCAGCGGAGGGGCCAAGCCTGAGGACAAAGAAGAAAAGGAGCCAATCAAAGATCAAATCATAAAGTCGACTCTCAATCCTAATGCCCATGAGTTCAAACCCAGGGTGTTCAATACTCAGCACAAACCGGCCACCACTCCAACCCCCCCGCGGCCACAGGGCCAGCCCAGCCCCTCCATCGTGGTGCAGCAGCCCCAACAAGTCTACAGCCAGACGGTCTGCTTCCCCCAGATGTACCCTCTGACCCCAGTCAGCCCTGGAGTTCAGaAAAGCATTATCTGGAAGTCTCCAGCCATGTACCATGTCCAGATGCCTCATATGACGGTGAGCCAGTCCAAGCCCTACAGACCAGTAGCCAACATGCCCCAGCAGAGGTCAGACCAGCACCACCCCCAGGGCACACCCACAATGATGCACCCAGCCCAAGCCGCGGGGCCGCCCATTGTGGCCCAAAGCCCCACCTATTCAGCCCAGTACTTCACCTGCAGCCCACAGCAGTTTACCAGCCAGCAACTGATGCAGCAGATGCCCCACTACCAGTCACAGGGCACAAGCAATGTGTGCCCCCCCCAGGCCCAGCATGTGTTCAGCCCGGTGATGCAGAGTCAGGCCAGGATGATGGCCCCTCCCAACCACGGCCAGCCCGGCCATCTGGTCTCCTCCACCACCCAGTATGGCGAGCAGACTCACACCATGTATGTGTCACAAGGCCCCATGCCGCAGCAGTACCAGCACCCCCAACCCTCGGCCACGCCCACAGGCCAGGCCCAGCAGGGCGGGCAGCATGGGGGAAACCACCCGGCTCCCAGCCCCGTCCAACAGCACCAGGCTGCAGCCGCCCAGGCCCTGCACATGGGCAACCAGCCCCAGCAGCAGATGTACCAGGCCCTGGCCCCTACCCCGCCCTCCATGACCTCGGGGACCAACCCCCAGTCCCCCCAGGGCAGCTTCCCCTCGGCCCAGCAGGCCGTCTACCTCCACCCCCAGCAGATGCAGCACGGCTACAACCCCTCCCACATGGCCCACATGCAGCAGGCCCATATGCAGTCTGGGATGGTTCCCTCCCACCCTGGCCACCCTCAGATGATGCTGATGGCCACCCAGCAGCCAGGCGGCCCCCAACTCCCCCAGAATGCCCTCAACCCCATCCCAGTGTCCTCCACTACACACTTCTCTTACTTGGCACACCCCCAAGTGCAACAGCACCATCAGTAGCAGCTGTGGAGGGTGCTACTGAGAACATGGACCCCTTATCCAGCCCTCGCTCTCTTCAAGGGTCTTGACGCAGATCTCTTGTCATGCTACTACACATTCTTTCCTCTCCCAGTCATAAAGAATGTTCCACAGGTTGTTGCATTGGAGAGGTTTTATTAATAACAAAGGATACCCTTTCtcttccccccacacacacctttTTAAGAAACCTGCAGAGGGTCCCTAATGAAACTTGATTCAGCTTGCCAATTGAGAGAAAGATAAAATGATCTGCACCTTGATATGGAAATTCTTCCTACTTAAACAGTGTTACTGTTTAACAGCTGCTGCATTCAAGACTTCAGAACAGGTTTTAGCCAAACTAAAACTAATTAAAATCTTCCTGTAATTAATAACAAGTTTGGCCTAAAGGACAAACATTATTAATTGTGATCCCACTTCTCACCTGACCATTATGTAACTTTTACTTTGTAGataatataaataatttaaaacatTTGGGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1111611 lncRNA upstream 251058 39229675 ~ 39231437 (+) True G976065
TU1111608 lncRNA upstream 254655 39227264 ~ 39227840 (+) True G976062
TU1111610 lncRNA upstream 256646 39225256 ~ 39225849 (+) True G976064
TU1111612 lncRNA upstream 258195 39223946 ~ 39224300 (+) True G976066
TU1111652 lncRNA upstream 309985 39172278 ~ 39172510 (+) True G976106
TU1111958 lncRNA downstream 88666 39609432 ~ 39609765 (+) True G976383
TU1111971 lncRNA downstream 113602 39634368 ~ 39634602 (+) True G976396
TU1112317 lncRNA downstream 146304 39667070 ~ 39667337 (+) True G976714
TU1112322 lncRNA downstream 150663 39671429 ~ 39671635 (+) True G976719
TU1112325 lncRNA downstream 153596 39674362 ~ 39674629 (+) True G976722
XM_021620847.2 mRNA upstream 245479 39200180 ~ 39237016 (+) False LOC110535681
XM_036935441.1 mRNA upstream 245480 39200177 ~ 39237015 (+) False LOC110535681
XM_021620846.2 mRNA upstream 246063 39200180 ~ 39236432 (+) False LOC110535681
XM_021620843.2 mRNA upstream 259424 39199736 ~ 39223071 (+) False LOC110535681
XM_021620842.2 mRNA upstream 259424 39200183 ~ 39223071 (+) False LOC110535681
LOC110535016 mRNA downstream 106203 39626969 ~ 39633152 (+) True LOC110535016
XR_005034792.1 mRNA downstream 134865 39655631 ~ 39656997 (+) True LOC118937442
XR_005034793.1 mRNA downstream 136844 39657610 ~ 39660250 (+) True LOC118937443
XM_036935458.1 mRNA downstream 174144 39694910 ~ 39787287 (+) False LOC110535018
XM_036935457.1 mRNA downstream 174145 39694911 ~ 39787287 (+) False LOC110535018
TU1111560 other upstream 424484 39057676 ~ 39058011 (+) True G976017
TU1109485 other upstream 1419395 38057798 ~ 38063100 (+) True G974184
TU1109353 other upstream 1439165 38042706 ~ 38043330 (+) False LOC110535015
TU1109354 other upstream 1443784 38020449 ~ 38038711 (+) False LOC110535015
TU1109337 other upstream 1647160 37831521 ~ 37835335 (+) True lztfl1
TU1113929 other downstream 1247070 40767836 ~ 40768229 (+) True G978255
TU1114082 other downstream 1482310 41003076 ~ 41016088 (+) True G978396
TU1115468 other downstream 2557726 42078492 ~ 42078855 (+) True G979689
TU1115777 other downstream 3007754 42528520 ~ 42533308 (+) True G979965
TU1115850 other downstream 3111058 42631824 ~ 42636709 (+) False G980019

Expression Profile