RNA id: XR_005034793.1


Basic Information

Item Value
RNA id XR_005034793.1
length 1572
RNA type mRNA
GC content 0.49
exon number 3
gene id LOC118937443
representative True

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 39657610 ~ 39660250 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCCTTTGTCTCGGATTCCTGTGGCCTTCCCACGGTCGAAGCCAACTCTCTGAGCCGCAGCTTGGTCATGTATGCCTGCAACAAGAATGTGGAACTGGCCATCCACTCCTCCTCGGTGCTCATCACCAACAGCCAGAGCAAGGCAGCCTCCAGCACCCTGATCCTCAGCATCTTCACCCCCAATGCGCTCATGATCGCCATGCACGCAAACGGCTCCCTGAACCAGTGGGCGGTCAGCTTCGCCTGCCTTCTCAACCGTTCTGCCTTCTCAACCGTTCTTAGCGTGTCGCACAAGTAGCGCTACTGCGGCCACTGCTTCCACCTCAACAACCTGGCCTGCCACTCCCTGTTGCCCCTGCTCCTCACCACCTCGCACCACAATGCCATGCGCACCCCCGACGTGGACAGTGTCATGGCCGCCCTCTCCCAGCCCATCAGGGGCAGGCCCTGCCGGGTGTCCCTGGGTGCCATGTCGAAGTACCCAAATGCCATTTACAGCAAGCTCATCCTGTGGAAGGTGGACCCTGGTGGAGCCCTTGTCCTTCTCTGGAGGGGTATCTGAGCTAGCCAGGAAAAACCTTCTCCACTCCTACGCCTTCTCCAACAGCCTGGCTGCCCACACTCATCCCTAGCAACTGCCTTGGTGTCTACTGCAACTCACCCAGTGCCTGCTTCGTGGCCAGTGATGGTCATTGAAGCCAAGAAACTACTCAATGAGCTCTACAACCCTGAGATATCAGGGAACGAGTCTTCTCCTGTCTGTCTTAAAGGCCTCCACATTTGGATTCATTTGGGGGAATGTTTCCGACAACCTTCAAGAAGCTGCTCTCCTCCTGACCATAGGGCACTTTGATCTGCCTCACAGGATACTCTAAAGATACTGAGATATGGAAACATTATTTAAATCTAATAAATTATCCTAATATAGAACAGGGACAGTCCATGATCTTTAAATCAGTAAAATAACCTTCAATAAGTCTGTTTAATCTCAAGACAGATTCACACCTAGCTTACTTACAAAGCAAGCACTGTCCTCATGCATATAGGGAAAATGTACCTATCCTGTTCAGCTGCAGGATGTTAGGGTCAGCGATGCTTCTCCCGGTTTGCCGCCTTTGGACTCCAGCAATATTCCATCTCCTGAAcgattgaaatctgacatgtgcAAACGTTATAAAAGTTACAATAATGACACTCAGCATAGTCGACGCCGCCCATACTCGCGCACCCCACGGTAACGTTAGCTGTTGcaatcattagctagctaacgttactaggTAGTTGTGCCGGTTAATGTTGACTTTTGTCAGGTATTACCTAACCTTCCAGAATTAATCCTACCTTTGAACCACCCGATCCTCCTGGGGTGGTTGTAAAGGTGGTTTCACTTCGCTGGCAAAATGTAAAAAGCAGTCATGTTTTCAAGGTTCGACATGACTTGGTCATTTGTTGGTGATGATGAATGAGAAGTTTTTCATATAGTGATTGGCCAACATTTGCATATAGTTTACATATTGTTATTTGatgtgtcaaatagtgttatttgacatgtatCTTTTTGACACACAAtgac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1111971 lncRNA upstream 23008 39634368 ~ 39634602 (+) True G976396
TU1111958 lncRNA upstream 47845 39609432 ~ 39609765 (+) True G976383
TU1111611 lncRNA upstream 426173 39229675 ~ 39231437 (+) True G976065
TU1111608 lncRNA upstream 429770 39227264 ~ 39227840 (+) True G976062
TU1111610 lncRNA upstream 431761 39225256 ~ 39225849 (+) True G976064
TU1112317 lncRNA downstream 6820 39667070 ~ 39667337 (+) True G976714
TU1112322 lncRNA downstream 11179 39671429 ~ 39671635 (+) True G976719
TU1112325 lncRNA downstream 14112 39674362 ~ 39674629 (+) True G976722
TU1112336 lncRNA downstream 32613 39692863 ~ 39693126 (+) True G976733
TU1112521 lncRNA downstream 139430 39799680 ~ 39799892 (+) True G976911
XR_005034792.1 mRNA upstream 613 39655631 ~ 39656997 (+) True LOC118937442
LOC110535016 mRNA upstream 24458 39626969 ~ 39633152 (+) True LOC110535016
XM_036935452.1 mRNA upstream 136844 39482495 ~ 39520766 (+) False LOC110535687
XM_036935458.1 mRNA downstream 34660 39694910 ~ 39787287 (+) False LOC110535018
XM_036935457.1 mRNA downstream 34661 39694911 ~ 39787287 (+) False LOC110535018
XM_036935460.1 mRNA downstream 34661 39694911 ~ 39787287 (+) False LOC110535018
XM_036935461.1 mRNA downstream 34661 39694911 ~ 39787287 (+) False LOC110535018
XM_036935462.1 mRNA downstream 34661 39694911 ~ 39787287 (+) False LOC110535018
TU1111560 other upstream 599599 39057676 ~ 39058011 (+) True G976017
TU1109485 other upstream 1594510 38057798 ~ 38063100 (+) True G974184
TU1109353 other upstream 1614280 38042706 ~ 38043330 (+) False LOC110535015
TU1109354 other upstream 1618899 38020449 ~ 38038711 (+) False LOC110535015
TU1109337 other upstream 1822275 37831521 ~ 37835335 (+) True lztfl1
TU1113929 other downstream 1107586 40767836 ~ 40768229 (+) True G978255
TU1114082 other downstream 1342826 41003076 ~ 41016088 (+) True G978396
TU1115468 other downstream 2418242 42078492 ~ 42078855 (+) True G979689
TU1115777 other downstream 2868270 42528520 ~ 42533308 (+) True G979965
TU1115850 other downstream 2971574 42631824 ~ 42636709 (+) False G980019

Expression Profile