RNA id: XM_036935462.1


Basic Information

Item Value
RNA id XM_036935462.1
length 5696
RNA type mRNA
GC content 0.47
exon number 18
gene id LOC110535018
representative False

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 39694910 ~ 39787287 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGCGGGTGACAGCTGGGATCGCTGTGCACTAGTAAGAAGGCTTCATCTCCAAATAGGATGACCAGCAGCTTTTGTTAGGGGACTGAGTTCGGTTGCCACGAATGGTTCGGGACGCTCCATTGTTAATTCTTGAACGCCAGGTTGGTCCTGCTCAGCTTTCTCAAATGAGTTTTTAAAACCGCTGGGTTTCAAGTGAATTTCCGATGGATATTCCGATTTGAAGAGGTGCGTAGCCTACAAGAGCGGCATGTAACAAAAAAAGCCCAAGAGGTTTAGAAAAGTAGCGTTCGCATAGTTTTTTTTATCTCTCGAAATGAGCACTGTCTGAACTGCTTTTTGAGCATTCGTTTTAATGGATTAAAGGACGAGCAATACATTTACCCCAAGGCATATCCATTCATGAGCTGAAGGCTAAAGTAAAGAAGTTATCGAGGAAGGAACCAGCAGTGCTACAATGAGGTCTGAGGCCTTGTTGCTGTATTTCACGCTACTGAAGATTGCAAGGGCTGGCTTCCCAGAAGACTCTGAGCCAATCAGTATTTCACATGGCAACTATACAAAGCAGTATCCGGCTTTCTTTGGACACAAACCTGGAAGAAACAATACACAACGGCACAAACTGGATATCCAGCTCATCATAATAATGAACCGAACGTTGTATATCGCCGCCAGGGATCACATATACACGCTGGATACAGACACCGCCAACTCCGAGGAGATCTTTTTCAACAAGAAACTGACATGGAAGTCCAGACAGGCAGATGTGGACACCTGCCGAATGAAGGGGAAGCACAAGGATGAATGTCACAATTTCATCAAggtcctcctgcagcaaaacgaTGACACCTTGTTCGTGTGCGGAACAAATGCTTTCAACCCCTCCTGTCGAACTTACAAGATGGACACCATGGAACATCTAGGGGAGGAGATCAGTGGGATGGCACGGTGCCCATACGATGCCAAACACTCTAACATCGCCCTGTTTGCAGaTGGAAAGCTCTACTCCGCAACAGTAACAGATTTCCTAGCGATTGATGCTGTCATTTATCGTAGCCTTGGAGATAGCCCAACTTTGCGCACTGTCAAACATGACTCCAAGTGTCTCAAAGAGCCGTATTTTGTACAGGCAGTTAACTACGGTGACTTCATCTACTTCTTCTATCGAGAAATTGCCATGGAGTACAACACAATGGGAAAGGTGGTGTTCCCCCGTGTGGCCAGGGTGTGTAAGAACGACCGGGGCGGCTCCCAGAGAGTTCTGGAGAAACAGTGGACGTCCTTCCTCAAGACCCGTCTCAACTGCTCCATCCCAGGAGACTCCCACTTCTACTTCAACATTCTGCAGGCCGTCACCGACGTCATCCACATCAACGGACGCAACGTTGTCATGGCAACCTTCTCCACACCTTACAACAGCATTCCTGGGTCGGCCGTCTGCGCCTATGACATGGCTGAGGTGGCTAATGCGTTCATGGGACGTTTCAAAGAGCAGAAGTCCCCTGATTCCACCTGGACACCTGTTTCTGAGGATAAAGTTCCAAAACCAAGGCCCGGGTGCTGTGCTGGCACGCCGTCCTTAGAGAAGTACAAGGTGTCCAACGAATTCCCTGACGACACCCTGAACTTCATCAAGCAGCACCCTCTCATGGATGAAGCTGTGCCCTCTATCGCTAACAGGCCCTGGTTTCTCAAGACCATGGTGCGATACCGGCTCACCCGGATCTCCGTGGACAACGCTGCGGGACCCTATCGGAATCACACTGTCGTTTTCCTGGGCTCGGAGAAGGGGATCATTCTGAAATTCCTGGCCAAGATGAACAGCGGTTTGCTGAATGACAGTCTCTTTCTGGAGGAGCTCAACGTGTATAACCCGGAGAAGTGCAGCATCGATGGTGTGGACGACAAACGTATCGTCAGCATGCAGATCGACAACCAGGGCCACTCTCTGTTTGTGGCCTTCACCTCCTGTGTGGTCAAGGTGCCGCTCTCTCGCTGTGAGAGGCATGGCAAATGCAAGAAATCATGTATTGCCTCCAGGGATCCCTACTGCGGCTGGGTGTCCGAAGGAGCATGCAGACAGGTGGTGCTCGACCCAAAATCGGCCTTCGAGCAGGACGTGGAGCATGGCAACACAGATGGACTGGGAGACTGCCAAAATACGTTTGTGGCCCTCAACGGAGTTATCCGTGAGAGTTACCAGAAGGGGCGTGACCAGCTGGTCCCTGTCACACTGCTGGCCATCGCTGTCATCATGGCCTTCGCCATGGGTGCCATCTTCTCTGGTATCCTcgtctactgtgtgtgtgaccACCGGCGACGAGACATTGAGCTGTCTGGGCGTAAGGACAAAGACCACGACAGGAGGGGCTCCATGAACAGCGTGACCAAGTTGACCGGCCTGTTTGAGACCGGGGCCAAGGACAGTCGCCCTGAGGCCATCCTCACCCCGCTCATGCACAACGGCCGCCTCACCAATGGTAAGATTCTGATCAAAGCCGACCAGCACCACCTGGACCTGGCTGGCATGCCCACCCCAGAGTCCACCCCCATGCAGCCCCGACGCAAGCCCAGCCGGGGAAGCCGCGAGTGGGAGAGGAACCAGAATCTGATCAATGCCTGCACCAAGGACCTGCAAACCATGGGCTCCCCAGTCATCCCCACTGACCTGCCCCTGAGGGCCTCTCCAGGCCACATCCCCAGTGTGGTAGTGCTTCCCCTGCCACAGCACCAGCATCAGCAGCCCTACCAGCATGAGTATGTAGAGCAGCCCCACCGCAGCGACCTCAGCCAGATGAGCCTGGGTGACCAGGGTGCCACACTGGAGTACAAGTCCCTAAAGAGCCCCTGCCACAGCCTCAACCTGGTGGAGAGCGACGGACTGCCGCCCAGAGTGCCCCAAAGGGAGGCCTCCCTCACCATCCCCCCTGCCGTGCCCCAGATGGGCAAGCGGCTCGAGGTGCACTCCTCCGTCTATGGCCATGAGTACAAGCGGGGCTACCCGATGAGTGCCCAGAAAGGCTCTGCCCTCAAAAAGCACAACACCAACTCGTCCAACTCCTCTCACCTGTCCAGACACCAAAGTTTTAACCACGTGGAGTCGCCGCCCCCCGCCCCACAGAGGGTGGACTCCATGCACATGAATTCCCAGGGGATGTCCCACTCCCGACAGCCCAGCATGAGCTCTTATGGTTCATTGCCCCGGACCGGGGTCAAACACCTCAAGCCTGACGTACCGCCCAAACCCTCTTTAGTGTCCCTCTCAACGAAAGTCAATTCCAATGACTCCTGCACATAATCAGCACGCTAGGAATACAGAACAGGAAACACAATTGCATCTCCTTTTGTCCTTGTACAGCAAGGACAAAAGTGTACAGCAAACACAACACTGCAAACACAACACACTTTTTAAAAGTTTTTTGTTTCTTTTATATATGTGTAAATATTCCACAAATGGTTGATGTTGAGCTCAGGCTGTTGACTCCCAGTTCCTCAGAAACACGGAACACTTGCTACTGAGAAGAAAATTACTTTCATGAATATTTAATTGACAAGCAACATGTCACCCCTGTAGCATTCAAGACGGTGGCTGTGTTGGACTTTTGAACACTATGACTTGACTGATGTTttgttttcttaactgactgcTAAACGCACATAGACAGTGAGAGTAAAGGGGAGCAATTATATAGTGAGGACTGGGGTGTTCTCCCAGCAAGCACTTGGGCACAGCGAGCTCTGACTGGAATGACAGCTTCAGTTTACGTGGAAAACTGTGAAATGCCTCTCAGTGTTACAGCTACTGGACACAGCAATCAAGTTCTGCGTTGGTTGAAAAAAGCCTTGGTCTGAGAATCTTCTACTGCATTGGTTACTGAATAACACATGACTGTTAATAGTAATAGcttgttgtatttatttttaataagtGCTTTTGAAGAAAATACTGACATTTTAGGCTCATAGAGAAGAGTTATTTAAATATGAATTAATCAAGAATGAAATTATTTAAAGTCAATCAACTGGAGCCAGTACAACTTTCTTGACACAAAAGGTCCACCAGGTCTTCTAGCGCCTTGGGTTTTTGAAGCTTGGGATATATGTGACCTCTGTATGGAGGATATATTTATTTAACTGTGCCAGATGGGACCTACATGATGGAGCAGAACCTCCCATGTTAAAGAAgtcagaaaaatacaaaaaacagaACTCCTGAAACTCACTCACTCCTCCATGGGCATCTACATACGTTTGGCACTGTGGTTttgcagtcagtctctctctcccggtTGGCTTCTGGCTCACTGTGTATTAACAAGGTTCACTCTTGCATATAAAAGTGCAAAGGGAATAAAACGTGGAATTCCACACATGAAAAAGAGAAGCGTGAGGATGTTGGGCGCTCTGCCAGGTGTGGAGAGCGGCCATTTTGGCAGGTACTGAAATGTCTTGTTTTCTCTTGGCACGTCACGCAGTCCTCTGATTGAATTATATCTGTTGATAGCCTGTTTCTCTTCCACATGTAAAGTTGTGCCTTACACCCTGAGTAGTGACATTTTCTTTAGCTGGTAACTATGTCTCCTCTTTGTATTTTCTTATGTCGTCTTTCACTGGTTTGATAAAGGCAAATAAAGAATGTGATCTTGTTGTAATTCTGTTCCCTAGAAATATACAGACATATTCTTCTTTGTAGTTCATTTCAGATAGTGCCAATGATGCGCTTAAAGCAACCCTTTTTGTTGTGCTGGCAGTGTCGATGATGTTGTTGTGTGTTGAATTTTTTACTTTGCTGTTTGATTGGAGGGATTAATGTTTGTTCTTGAAATGGCCTCTTAGGGTCTTGCTGGTGCACAGCAATAATCAAACACTAACATATGAAAAACACACCAGTATACTGTACAGACATGGCACCAGGTTCCTAGTGTACATGACAACACTTCAGTTTCTAGGCAGTGAAAAGCAGGCTGGTTCCTGTGatagaaaagagtaaaaaaaaatattaggaGATGTTTTTTAAAAACACATGTTCCAGGACGATTAGAGTAATTTAATTTGTACTAACTCTCTTTATCAAGGTCTTATGAATGACAGTTCATTGACCAATCTGATCACATTTTTATTGATCACATCTCCCCAAATCAACAGAGCACTCCtttagtattgtgtgtagataggtgagTTTCTTGATCTCAAGCAGATTTCCATTTACAATGGAGGAAAGCCAACTATTTCTCATCCACAGCCAATGCAAGAAGAACGAGTAGGATATTTCCACTTTTGAggcatatacagtatgtgttaatTGAACTAACGTGTAAATAGATGCTTATAGGGTTCGATTGCAGCGACTGCGACATACATCATGATCAGATTAGGTTTAGTAAAGGGAAGGGAAGGTCATTTGAACTTTCCACCCCAATAGTGCAGATTGCATCTCTAGCCACGGTCTACATGGCTACTGTGGACAGTGTGTCTCTttggtgtgtgtgcctttgtctTTCACCCTTGCTATACACTGCTAGATGCAACTGAGACAGACTCAACTCGTTTTGAACTTTGTAAGCTTGTAAGATATTGTGATGTCACAAGGTTTTTTGCCCTACTCCATTTAACATCTGATTCACAGCTTAATGTATGTTGTAAAAAACATTCTCTTTAATAAATGCAAAatggaataaaaaaatatatattgtcatGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1112336 lncRNA upstream 1785 39692863 ~ 39693126 (+) True G976733
TU1112325 lncRNA upstream 20282 39674362 ~ 39674629 (+) True G976722
TU1112322 lncRNA upstream 23276 39671429 ~ 39671635 (+) True G976719
TU1112317 lncRNA upstream 27574 39667070 ~ 39667337 (+) True G976714
TU1111971 lncRNA upstream 60309 39634368 ~ 39634602 (+) True G976396
TU1112521 lncRNA downstream 12393 39799680 ~ 39799892 (+) True G976911
TU1112533 lncRNA downstream 20511 39807798 ~ 39808057 (+) True G976922
TU1112536 lncRNA downstream 21622 39808909 ~ 39809141 (+) True G976925
TU1112546 lncRNA downstream 26778 39814065 ~ 39814607 (+) True G976935
TU1112587 lncRNA downstream 61807 39849094 ~ 39849410 (+) True G976960
XR_005034793.1 mRNA upstream 34661 39657610 ~ 39660250 (+) True LOC118937443
XR_005034792.1 mRNA upstream 37914 39655631 ~ 39656997 (+) True LOC118937442
LOC110535016 mRNA upstream 61759 39626969 ~ 39633152 (+) True LOC110535016
XM_036935454.1 mRNA upstream 174145 39482495 ~ 39520766 (+) False LOC110535687
XR_002475491.2 mRNA downstream 48919 39836206 ~ 39837832 (+) True LOC110536621
XM_021620862.2 mRNA downstream 154303 39941590 ~ 39949172 (+) True LOC110535689
XM_021620863.2 mRNA downstream 193421 39980708 ~ 39982968 (+) False LOC110535690
XM_021620865.2 mRNA downstream 193449 39980736 ~ 39982968 (+) False LOC110535690
XM_021620864.2 mRNA downstream 193468 39980755 ~ 39982968 (+) True LOC110535690
TU1111560 other upstream 636900 39057676 ~ 39058011 (+) True G976017
TU1109485 other upstream 1631811 38057798 ~ 38063100 (+) True G974184
TU1109353 other upstream 1651581 38042706 ~ 38043330 (+) False LOC110535015
TU1109354 other upstream 1656200 38020449 ~ 38038711 (+) False LOC110535015
TU1109337 other upstream 1859576 37831521 ~ 37835335 (+) True lztfl1
TU1113929 other downstream 980549 40767836 ~ 40768229 (+) True G978255
TU1114082 other downstream 1215789 41003076 ~ 41016088 (+) True G978396
TU1115468 other downstream 2291205 42078492 ~ 42078855 (+) True G979689
TU1115777 other downstream 2741233 42528520 ~ 42533308 (+) True G979965
TU1115850 other downstream 2844537 42631824 ~ 42636709 (+) False G980019

Expression Profile