RNA id: XR_002475491.2


Basic Information

Item Value
RNA id XR_002475491.2
length 1433
RNA type mRNA
GC content 0.39
exon number 3
gene id LOC110536621
representative True

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 39836206 ~ 39837832 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aatatcCTACTGATTCGGTGATCACCAATCCTGCAACCGCAAAATGTCGGATAAAGcaatttcacacaaaaaaaaaacttttttcttCATCTACTTTTTAAGGAGATGCAGTAACGGGACCACACATACAGACGCATATACAGTATTTGTTCATTAACATCTTAAATgcttttttaaatgaaataatgATAAagtctttcaaaatgcagatgtttatttcaACTACATCTCAACTACAATATTTTATGTAACCTTTTGCTTTGTAAATAGCTAAATTTACCATCAAATATGGGCCTGGTCCCTGGCGAGAAATTGCTCCCCACACATGGAGTTTGAGGGGATGTTTGAGACTCGGCATGCTTGATCTTTTTTTCTGTAGCAATTTTGAGCAAATTGCTCAAGGGCCACGGTTGATTAGTCTGTGAAGATGACATCATTGAATGTCTTGCCAGCTTCGATCCATGCCTGGGCCTGCATCATGTGAAGTGCTTTGTTTGTCAGACGAACCATTGGGTCGAAACTTGAAAATGAGCCGGAGCTGAGAGGATCACCAAAACTAAAGAGCATACAGCCATGCCGACAACCATCCATGGAGATCAGTGGACAAAGGGCTAGACAACGGGCCTCACCGAAAAAACGCATGGTTCCCAAGAAAGCGGCCACTGTAATCGATGGGGGCTCAGGATGGTATTATTctgctcatctgatgaaggtgcacACTTTGAAGACCGAGTTTGAGATATTGAAGGCAGACcaacagaaagagaaacattCTCTCAGGGCAGAGATACGGGCGACAGATGATGCATTGGACCAGAGACAAAAAAGCATTAAAGACAGAGCTAATGAGTACTTGAGGTCACTGAGaaagtctggacatggcctgctctcacttaagtaaggaattaggcacttgTATGACGTTTACTATGTAGGCTACAGTAAACCTATTTGTCCTGTTGGTTTttgtcagactgcacagtagcctagtAAACATATGCATTTTAAAACagttgtatttattttaaaatcaaATTCAATAATATACTTGTACCACTGTAGataatgtgtttttattttttagaatacAGTTCTCggtttacagtagtgatggacagttggaggcattttgaaaacatgttttcaaacacttgtttttcacaagtgtagcaggttgtgaactctgcacACAACGTTTCCATTCCGAGAATGAGAATGGTAAATGGCTGTATTAATACATTCACTCAGTACATTGGAATACAAAAGAAGCCATCAACCCATGATGGGCTATTATCAGGACAATGGACTCTTGCCAAGGAGGAGATGAATAAGGAGGGTAGGAGGAGCGTTGTATTTAAAGACACTGCACAGAAGCCCAACAAACAAGTGCATTttgaaatagtaaaaaaaaaatgaattcaaTAATAAAATGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1112546 lncRNA upstream 21599 39814065 ~ 39814607 (+) True G976935
TU1112536 lncRNA upstream 27065 39808909 ~ 39809141 (+) True G976925
TU1112533 lncRNA upstream 28149 39807798 ~ 39808057 (+) True G976922
TU1112521 lncRNA upstream 36314 39799680 ~ 39799892 (+) True G976911
TU1112336 lncRNA upstream 143080 39692863 ~ 39693126 (+) True G976733
TU1112587 lncRNA downstream 11262 39849094 ~ 39849410 (+) True G976960
TU1112604 lncRNA downstream 21884 39859716 ~ 39860089 (+) True G976977
TU1112645 lncRNA downstream 51151 39888983 ~ 39889199 (+) True G977018
TU1112698 lncRNA downstream 126432 39964264 ~ 39964696 (+) True G977071
TU1112750 lncRNA downstream 205931 40043763 ~ 40044055 (+) True G977115
XM_036935458.1 mRNA upstream 48919 39694910 ~ 39787287 (+) False LOC110535018
XM_036935457.1 mRNA upstream 48919 39694911 ~ 39787287 (+) False LOC110535018
XM_036935460.1 mRNA upstream 48919 39694911 ~ 39787287 (+) False LOC110535018
XM_036935461.1 mRNA upstream 48919 39694911 ~ 39787287 (+) False LOC110535018
XM_036935462.1 mRNA upstream 48919 39694911 ~ 39787287 (+) False LOC110535018
XM_021620862.2 mRNA downstream 103758 39941590 ~ 39949172 (+) True LOC110535689
XM_021620863.2 mRNA downstream 142876 39980708 ~ 39982968 (+) False LOC110535690
XM_021620865.2 mRNA downstream 142904 39980736 ~ 39982968 (+) False LOC110535690
XM_021620864.2 mRNA downstream 142923 39980755 ~ 39982968 (+) True LOC110535690
XM_021620866.2 mRNA downstream 146753 39984585 ~ 39990217 (+) True LOC110535691
TU1111560 other upstream 778195 39057676 ~ 39058011 (+) True G976017
TU1109485 other upstream 1773106 38057798 ~ 38063100 (+) True G974184
TU1109353 other upstream 1792876 38042706 ~ 38043330 (+) False LOC110535015
TU1109354 other upstream 1797495 38020449 ~ 38038711 (+) False LOC110535015
TU1109337 other upstream 2000871 37831521 ~ 37835335 (+) True lztfl1
TU1113929 other downstream 930004 40767836 ~ 40768229 (+) True G978255
TU1114082 other downstream 1165244 41003076 ~ 41016088 (+) True G978396
TU1115468 other downstream 2240660 42078492 ~ 42078855 (+) True G979689
TU1115777 other downstream 2690688 42528520 ~ 42533308 (+) True G979965
TU1115850 other downstream 2793992 42631824 ~ 42636709 (+) False G980019

Expression Profile