RNA id: XM_021620862.2


Basic Information

Item Value
RNA id XM_021620862.2
length 1955
RNA type mRNA
GC content 0.41
exon number 5
gene id LOC110535689
representative True

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 39941590 ~ 39949172 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGCGATGCTCAAAAGTTAGTTAGAAAGCAAGCTTGCCGGGATAAATACGCGCTGAACCATGGAGCAAACCGAAGTGATGAAACCAGAAACTCTTGATGATCTGATCAAAGTTTTGCATAAAATCTTTGAAAGTGACAATATCAATGTGGAGGAGGTGCAAAATATAATGGAAGCATATGACAGCAATCCACAGGAATGGATGAAATTTGCAAAATTCGACCAGTTCAGGTACACAAGGAACCTGGTGGATGAAGGGAATGGAAAGTTCAACCTCATGATACTTTGTTGGGGAGAGGGTCACGGCAGCAGTATCCATGACCACACAGACTCCCACTGTTTCATGAAGTTGCTGCAAGGCCAGCTGAAGGAGACGCTTTTTGAATGGCCCGATAAAAAAACATGCAACATGGTTCAGAAATCTCAGAGAATCCTGCAAACAAACCAGTGTGCCTACATCAATGATTCCTTTGGGCTGCACAGAGTAGAGAACGCCAGCCACACAGAATGTTCAGCCAGTTTGCACCTGTACAGTCCCCCCTTCAAGACCTGCCAGACCTTTGACCAGCGGACTGGACACAAGAACACTGTCAAGATGACGTTCTGGAGCAAATTTGGAGAGAGGACTCCATTTGAAACCACAGTCTCACAAGAAAATAACTAAGAAGCTGAAGACATTTGCGTTTGGAATGACAATGTTGTAAATTCAGTCAACATGACACGGCAAAGAAGCAAAATGCGGACCTACAACTAAACAACCGTTTATATTGGAGCGGACATTTCAAAAGGACATGTGGGTAGTTAGAATGGCTTTATCACTGCCCAGTGTGAGCTTGGCAAAAACTGATGAGCACAGGATGAATGCATGAATAGGCTCAGCCATGGATTGAATCTGCTCTTTGTTTGGTAGGCCTGAGGAGACCCCTTCCCAATAACAGCATTCCTATGTGTCTATGACCTCTGTAACCACACTTTTGGACTGTTACGGCGGACGGTTGAAGTGTATAATGTATGAGTGGAAATAGGTTGTCTATTCAATCACATAAAGTGATGATCTAAAATCATTCTGTGATCAACAGTTTTACACTCAATGGAGCACTTTTATTGCGGTATAGATTTTTACACAAAATGATCTTAACACTTGTCAAAATAGTGATGTAACATGAAATAGTTTGTAAAGTCAAATTAGAGCATTTGGCAAAGGTAAAGCTTTATAAATGTATTGGAAAATACGATGCCTGTAATTTATATTTGCTGTGTTCAGTTTTTGGGGTACGAGAAGGGGTGATAATTGGTATTAGCTATTTCAGTGTCATTCTTGAATGTGTTTCATTGGTTTTCAGCCTATGTATTAGGAGACCAGTCAAGGAGAGTCTGGACTTTAGGGGCAGGGTTGTATCATAATAAAGGCAATGCTCTCACTTtttctcaggattttgcctgttgTTTTAATTGTAGATGTATTTATATAGGTTACAACATAGTGCCACAATAGCATTGTCGGTTAAAGAGATTCTacagtacttttgtatactttttagccaatagttctgaaagtagagctcacgagccaaaagtggtccccggAAAATGTGTACTATTTCAcatgtgcagatatgtgcaccacgtcattgctctcGCTTTGCTGTGTGGGCAACTTGCtggctgtcactcaaatggcaaggggctgaagctcattggcaaTAACTCGAATTGCTAAGGGGCTGGCCCATGGGGAAAATGTTGGGATTTCGTAGCTAATTGAGGtcagacagtaattctgctcatagattatgcatgtatgaactaaacattgacacatccagcccaaatcTGGAGGCTTAAATAATTAGTAGTTGCCAAAATTACACAACTTTAAAATGCATGAAAGAATATATTGTGAATGATAAGCTTTGCTTTGACTGTTGACCATTAAACATTACATATGTCATGAgaaa

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0046439 L-cysteine metabolic process biological_process
GO:0005506 iron ion binding molecular_function
GO:0017172 cysteine dioxygenase activity molecular_function

KEGG:

id description
K00456 CDO1; cysteine dioxygenase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1112645 lncRNA upstream 52391 39888983 ~ 39889199 (+) True G977018
TU1112604 lncRNA upstream 81501 39859716 ~ 39860089 (+) True G976977
TU1112587 lncRNA upstream 92180 39849094 ~ 39849410 (+) True G976960
TU1112546 lncRNA upstream 126983 39814065 ~ 39814607 (+) True G976935
TU1112536 lncRNA upstream 132449 39808909 ~ 39809141 (+) True G976925
TU1112698 lncRNA downstream 15092 39964264 ~ 39964696 (+) True G977071
TU1112750 lncRNA downstream 94591 40043763 ~ 40044055 (+) True G977115
TU1112755 lncRNA downstream 107219 40056391 ~ 40056599 (+) True G977120
TU1112756 lncRNA downstream 107679 40056851 ~ 40057062 (+) True G977121
TU1112757 lncRNA downstream 108030 40057202 ~ 40057521 (+) True G977122
XR_002475491.2 mRNA upstream 103758 39836206 ~ 39837832 (+) True LOC110536621
XM_036935457.1 mRNA upstream 154303 39694911 ~ 39787287 (+) False LOC110535018
XM_021620863.2 mRNA downstream 31536 39980708 ~ 39982968 (+) False LOC110535690
XM_021620865.2 mRNA downstream 31564 39980736 ~ 39982968 (+) False LOC110535690
XM_021620864.2 mRNA downstream 31583 39980755 ~ 39982968 (+) True LOC110535690
XM_021620866.2 mRNA downstream 35413 39984585 ~ 39990217 (+) True LOC110535691
XR_005034626.1 mRNA downstream 49293 39998465 ~ 40000628 (+) True LOC118937349
TU1111560 other upstream 883579 39057676 ~ 39058011 (+) True G976017
TU1109485 other upstream 1878490 38057798 ~ 38063100 (+) True G974184
TU1109353 other upstream 1898260 38042706 ~ 38043330 (+) False LOC110535015
TU1109354 other upstream 1902879 38020449 ~ 38038711 (+) False LOC110535015
TU1109337 other upstream 2106255 37831521 ~ 37835335 (+) True lztfl1
TU1113929 other downstream 818664 40767836 ~ 40768229 (+) True G978255
TU1114082 other downstream 1053904 41003076 ~ 41016088 (+) True G978396
TU1115468 other downstream 2129320 42078492 ~ 42078855 (+) True G979689
TU1115777 other downstream 2579348 42528520 ~ 42533308 (+) True G979965
TU1115850 other downstream 2682652 42631824 ~ 42636709 (+) False G980019

Expression Profile