RNA id: XM_036935465.1


Basic Information

Item Value
RNA id XM_036935465.1
length 4806
RNA type mRNA
GC content 0.47
exon number 11
gene id LOC110535019
representative False

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 40015466 ~ 40038754 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAGATGTACAGTGAGGGCGGGGTTACGCGTCAAAGATTATTTCTCTTGATAAATCTTGCAAAATGTTCTCCTCAAGCAGCTGGGGAATGAATTGTATGCTACTTAGGCTGCTCGATGTATTGAGGATGAAGATACAACCATATTTCTCCGAATGTTACGTTCTCTCTTTGGGAAGCCAATCGATTTTTACAGTATTTGTTAGGCTATTTATTTGTTATTGACCAATTTTGTTAATTATAATCCCTGCATTTTGTCGACATTATACATCATTATGTCGGATACTGCGGATACCGAAGAAAATCAGGATATGTTACCGGGTTTGGTCGACCAGATAGTTCAGCGAATAACAGCCGGAGAGGTCCCTATCAAGAATATTGAGCGCGAACTAATTTGTCCGATCTGCAAGGAGCTGTTTACACACCCCCTCATCTTGCCCTGTCAGCACAGCGTTTGTCACAAGTGTGTCCGAGAGCTGCTGCTATTGAACCATGAGGATTCTTTCGATGCAGGCTCGGAGTGTTCCCTCCCTGGGAGCCCAGGGCCCCGATCCAGAGTGCCCTCGCCAAGCATGGAGAGGCTGGATAGGCTTGCAAGATCAGCCACACTGCAGAGAAGGTCGTTTgggaggagagGCTCTATGTCCTCACCAGGATGGAGGCGTGGCTCTGTGACCCCCCGCATCACCACTTTCCCATGCCCGGGTTGCCAACACGACGTGGACCTGGGCGAGCGGGGCATGAGCATGCTCTTCCGGAACTTCACCCTGGAGAGCATCGTGGAGCGCTACCGGCAGGCGGCCCGCGCTGCTGTTGCGATCATGTGCAACATGTGCAAGCCGCCCCAGCAGGAGGCTACCAAGAGCTGCATGGATTGCAAGGCCAGCTACTGCAATGAGTGCTTCAAGTTCCACCACCCCTGGGGCACCCCCAAAGCCCAGCACGAATATGTGGGTCCCACCATGAACTTTAGGCCCAAGGTGCTGATGTGTCCGGAGCATGAGATGGAGAAGGTCAACATGTACTGCGAGGTGTGCCGGCGTCCAGTCTGTCATCTGTGCAAGCTGGGAGGCTCCCACGCCAACCACAAAGTCACAACCATGAGCAGCGCCTACAAGATCCTCAAGGAGAAGCTATCAAAGGCTATCCATTACTTAATCAGCAAAGAGGACCAAGTGAAGACTCAGATTTCCCACCTGGAGGTGTTGATCAATGAAACCGAGGAGAAAGGCCAGTTGGCGGAGCGTCGGACCGACGAGAACTTTGAGCGACTGTTCGAGACCCTCCAGGAGAGGAAGTTTGAGATGCTGCGGTCCATCGAGCAGTCGAGGACGCGGCGCATGGACCAGCTTCGGGGCCAGGTGGACGAGTACCAGGGCATGTTGGAGAACAGCGGCCTGGTGGGTTATGCCCAGGAGGTTCTCAAGGAGACGGACCAGTCCTGCTTTGTTCAGACTGCCAAGCAGCTGCACACCAGGATTGCGAAATCCACCGAGTCTCTGAGGACATTCCACCCTGTGGCCGACCCCTCCTTTGATGAGTTTGTGCTGGACACTTCCAGAGAGGAGACCCTGCTGAAGGAGCTTTGTTTTGGTGGAGTCCCTGACCCTCCCATCATCGATCTGTCCCGCAGTCGCGTCTACAACGAAGGCCTGGTGTGCTGGCAGTTGGCTGAGGATACCCTGGCCACAGACCACCAGGTGCTTGAGTACAGGAAGCTGGGTGTTGAGCAGGACGAGGAGGAGGGCGGCAGCCACTGGCGCCCCACAGTCCTGGTGTACGGCCCCAGCACAGTAGTGTGCGACCTGGAGGCCAACAGCCTCTACTCGTTCAGAGTACGCAGCTGCCGCAACTCCTTCTACAGCCCCTACAGCCCAGAAGTCACCTTCCACACACCACCTGCTCCAGtgttTGGCTTCCTGTTCAATGACAAGTGCGGCTTCAGCTCGGAGCGGCTGACATTGAGTAAGCTGCGTGACTCGGTGGAGAGTGCGGCCGGCATGGCCTTCCTGCTGGCTGCTGAGCGCGTGCAGACAGGCAGCTACATGGGCCTGGACTACATCATCGGTGACACAGGCATCTCTCAGGGCAGACACTACTGGGCCTTCCGCGTGGAGCCCCACTCCTACTTAGTCAAGGTGGGCGTGGCCTCTGATTCCAAGCTGCTGGAGTGGATCCACAACCCCCGGGACACTAGTAGCCCCAGGTACGACCATGACAGTGGGCACGACAGTGGCAGCGAGGACACGTGCTACGACCTGTCCCAGCCCTTCACCCTGCTCACCGTGGGCATGGGCAAAGTGTTCATCCCCAAAGCATCCATCTCCACCGCCGGCAATGACCACGGCAACCGGGTGCTGCCCATGCCCCAGCGCATTGGCGTGTACCTGGACTACGAGGCGGGCCGTGTCTACTTCTACGATGCAAACACCATGAGATGCCTTTACGAGCGGCAGGTGGACTGCACCGGTACCATGTATCCCGCGTTTGGCCTCATGGGTAGTGGCAAGGTCCAGCTAGAGGAGTTCATCGCAGCAAAGCGACTGTCGTATATGTGAGATGTTGGGCCTTCCACACACCAAAGTTTCTCTCGCACTCTCAACACTTGCCTTTGAgctcatgtttctctctctgctttcagTCAGGTATATTTTTGTATtgattttgtttgtgtgtgtatgtacacacTATTTCAATTGATTATCATCATGCCATTTCTTTGTTTTAATGAACAGCTATTTATATTGTACTACTAAGTCCAGTAAAATGTAGCCAAGTGAAACCCGAAGAGCCTTGCAGCTAGTCCCACTCCTGTGCCTTTCATGATAAATAGGTAATCTAGCAAATGCTGTAATTTGTCTAATAATAACTGTGCAAAACAGGCTAGGTTAGTCATCAGTTACAAAGGTGAGAGAGTGTATCTAAGTTGCAAGGACCCCTCGGTTGAGAAACATCCCTACCAAAAACTGAGACAAAACGTATACCTAGTCAATGTCCTTTGACAAGACTCACGGTCAACACCAGTTGGGTAGACCGCATTTGAATTTGGACACATTCTCACAGGTGTTTATAAAAGACTACCACACCGTTCACATATTCTCTCACAACCTACTGACTACTTCAAAGCAGAGCACATTTATCTGAATTGTAAACACTAGGCATTCACATGCAGGGTTGAATTCAAACTTGAGTTCTGCGTGTGCAACTCAGACTTCCCATGTAAATCATGGTGTCAACTTTTGGAATTGTGAGTTGACACAGGCCGATTTCAAGTTAAAATTACAGCCAGTTGTTACACAAGTTGTTGATTTGGTTCTTGAGAATCAAGAGGGTGCAGCGTTTCAGAACATTTAGATAGAAAATATATTATGCAAATGGACCAAATTCTCTGTCCTCTAGAAAAGGGTGTCATTTTGACTCTATACATTACTTTTCTCGTTTCACCGTACTGAATACACCCCTGGTCAGCTCTGGTTTTCCTACATGGGTTTCTGGACAGGACTATCTGTAGATCGTCATGTTTGTGTTTTGTTGAGGGTAAGGGTAATCGGTTTGTGTTTTCTCAGGTTTGTGGCCTGTGGGCCTTATGCTACCTACCTCCTATCGGCCCTGGAAATCCCTTTAAAACTATACCTTCCTACTCGGAACAGGACTAAACTTTCCTTTGCAGCTTCCATAAATACATTACAATTGTATTATACCGTAATATATCAGCCTTTAAGATTGTTCATATCCAATAATAAACTGGAATTAACattttttttcttaattttaACACCCATGTACATATCTAGTGTGACATTTTCTGTCAAATAAAACCTAGATCTGCAATCTGTATCTGCTGTGACGTTTCTCAAGGCTTAATAGAAACTTGAGACATTTGGGCAGTTGGTGGAAAATTGTAATTGGACCGAGATGTAATCACGCCTGACTGAATTTGTGAAGTGAGCAATTTAAAACTGAACATACACATCCCCCTTTCTGTGTTTTGATGTGTTTAGGTTCATTTGAGTGTACCGTTTCCTAGAATATGTGGTGTTATTTTGTTGCTTATCTGAATCCTATAAGGTCATGTTGCGTAACAACATAATCTGTAGTTTTAAACTGAATTCCTATTTACTTTAGAATTGGTGTGCATCATTTAGAGTAATTCTCTACCATTCCTTTTAGGGCAcaacacctctacacctctaccaTTCCTTTTAGGGCACAACACAACCTGTTCCTTTTGGAATGACTGAAACACCTTTAAAAAGTCTATGCACTTAATTAACAGGTTCAGGGTTGTTTATTCATCACAGAATGCATTATTATATACAGAACAAACTGAATGTCTCTTAGATTAGGTGTTTGTTAATTTGCTTATCTTGAGTCAAGTCACTGGTGGCCACAGCAGCTGTGTCTTTCAGGGTCGATGTATGGTAGAGGTTTCTATATAGTGTGCATATTTTAGCGACGTATCACGGCTAATTTTAGAAAAGGGAATCGTATGGCTTTCAGTAGTACGTTAGACCAAATATTCTGCAGACTCTCAATCAAATGGTTCAAGCTAGCACTTTAAACTGTCGCATGTATGCCTCTTGGCTGTGCAGGTCTGTATGAATTGGTGTGCAATATTACGTAGAATGCAGGAAATAGGCCTATTGTTTTCTCCTGTAAGTAATGGGATGTGATGTTTGCTTTCTGTGAGTATAATGCTTTAATGAACATGAAGCTTTGTTGGTCATCAAATTCTTGAAATACTacgcttttttttattttaaatttgcTGTTTGTGGATTTGTATGAAATAAACTAGTGTGTTTTAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1112698 lncRNA upstream 50770 39964264 ~ 39964696 (+) True G977071
TU1112645 lncRNA upstream 126267 39888983 ~ 39889199 (+) True G977018
TU1112604 lncRNA upstream 155377 39859716 ~ 39860089 (+) True G976977
TU1112587 lncRNA upstream 166056 39849094 ~ 39849410 (+) True G976960
TU1112546 lncRNA upstream 200859 39814065 ~ 39814607 (+) True G976935
TU1112750 lncRNA downstream 5009 40043763 ~ 40044055 (+) True G977115
TU1112755 lncRNA downstream 17637 40056391 ~ 40056599 (+) True G977120
TU1112756 lncRNA downstream 18097 40056851 ~ 40057062 (+) True G977121
TU1112757 lncRNA downstream 18448 40057202 ~ 40057521 (+) True G977122
TU1112760 lncRNA downstream 21777 40060531 ~ 40060800 (+) True G977125
LOC118937386 mRNA upstream 725 40005053 ~ 40014741 (+) True LOC118937386
XR_005034626.1 mRNA upstream 14838 39998465 ~ 40000628 (+) True LOC118937349
XM_021620866.2 mRNA upstream 25249 39984585 ~ 39990217 (+) True LOC110535691
XM_021620863.2 mRNA upstream 32498 39980708 ~ 39982968 (+) False LOC110535690
XM_021620868.2 mRNA downstream 2985 40041739 ~ 40147176 (+) False ccser1
XM_036935464.1 mRNA downstream 2985 40041739 ~ 40147207 (+) False ccser1
XM_021620867.2 mRNA downstream 2985 40041739 ~ 40151727 (+) True ccser1
XM_021620870.2 mRNA downstream 149567 40188321 ~ 40739490 (+) False grid2
XR_002475295.2 mRNA downstream 149567 40188321 ~ 40741589 (+) False grid2
TU1111560 other upstream 957455 39057676 ~ 39058011 (+) True G976017
TU1109485 other upstream 1952366 38057798 ~ 38063100 (+) True G974184
TU1109353 other upstream 1972136 38042706 ~ 38043330 (+) False LOC110535015
TU1109354 other upstream 1976755 38020449 ~ 38038711 (+) False LOC110535015
TU1109337 other upstream 2180131 37831521 ~ 37835335 (+) True lztfl1
TU1113929 other downstream 729082 40767836 ~ 40768229 (+) True G978255
TU1114082 other downstream 964322 41003076 ~ 41016088 (+) True G978396
TU1115468 other downstream 2039738 42078492 ~ 42078855 (+) True G979689
TU1115777 other downstream 2489766 42528520 ~ 42533308 (+) True G979965
TU1115850 other downstream 2593070 42631824 ~ 42636709 (+) False G980019

Expression Profile