RNA id: XM_021620869.2


Basic Information

Item Value
RNA id XM_021620869.2
length 5833
RNA type mRNA
GC content 0.50
exon number 16
gene id grid2
representative True

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 40188321 ~ 40743994 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTTCCTTCCAGGTAATTATGTTCCAGAAAATGCGCGGCTGGCAACTGCTGCTGCTGTCCCTGTAGTTGGCTCTCTCTACCGGGCCTCCTTCCACTCAGTATAGCTCACCCACCGACTGCTAGAGAGAATCCGCATGCGGAGCCTCATCGAGCGCACCGTGGTGAATTTACACTTGATTTTCTGTCGCAGAAGAGTGGTATCTAGCAGAAGAGTGGTACCTACGCTTGCCAGATTCTTGAATATGGAGGTCCTTGTGAAATATACATTtgataattttttttgttttatgtcTTAAATATCAGTGATGGATCCAGTCTTTGAAACCGCATGAAAATGCAAGTTTTGCAGTTTATTTTCATTCGTTCAAGCTGAGCAAATGCGTCGTGTCTGAGGCAGAATCTACGGTCTCCTCCAAATCAGCCCAGGATTTGCGTATGAGAAACGCAAACCACCGCGTTCCTATTGATCGAACATTGCGTTTGGCTTGCCTTTATCCCCAGTTTCGGATTGATCGGATGCACCGGCGTTGGATGCGACTGTGGAGAACTCCATAGCTTTCAGCACGATTTGATGTAAAGGGTTTTTCAACAGGGTAACTGGACGTCTACCTTTCTGAAAACAGCTACATTCAAGTCAAGTGCGAAAGCCATCGATAGATCATCCCTATATGGACTAAACCTTGGCTCCTCGGGATTTTAAAACTAGCAGGTCACACTCATCTTGGTTTTGGCGCTTCTTGGGAAAATTGCCTTAAACTGCGGGAGCCATGAAAGTTGTTTCAGCAGTGTTGTTCCTTGCCATATTTTGGAGTCAGGAGTGGGAGCCCGTGAATTCTGATTCAATCATACACATCGGGGCCATCTTTGACGAGTCTGCCAGGAAGGATGACGAGGTGTTCCGCATGGCCGTGGCAGACCTCAACCTCAACAACGAGATCCTGGAGACGGAGAAGATCACCATCTCCGTGGAGTTTGTGGACGGGAACAACCCTTTCCAGGCGGTCCAGGAAGCCTGTGAGTTGATGAACAGGGGGATCTTGGCGCTGGTCAGCTCTATCGGCTGTATGTCGGCGGGCTCCCTTCAGTCTCTGGCGGACGCGATGCACATCCCACACCTCTTCATCCAGCGTGCCACTGCCGGGACCCCTCGCTCCAGCTGCCCCCTCATCACCACCCGCACCCGCCAGGATGACTACACCCTCTTCGTGCGCCCGCCCGTCTACCTCAATGACGTCATCCTCCAAGTGGTCAGCGAGTACAGCTGGCAGAAGTTCATCATCttctacgaccaggaatacgATATCCGTGGGATCCAGGACTTCCTGGACAAGACGTCTCAGCAAGGCATGGACGTGTCGCTTCAGAAGGTGGAGTCCAACATCAACATGATGATTACCAGCATGTTCCGGACCATGAGGGTGGAGGAGCTCCACCGCTACCGGGACACGCTGCGCCGGGCCGTGCTCTTCATGAGCCCTGCCACCGCCAAGGCCTTCATcactgagGTTGTGGAGACGAACCTCGTGGCATTCGACTGCCACTGGATCATCATCAATGAGGAGATCTCAGACCAGGACGTCCAGGAGCTGGTTATGAAGTCTATCGGGCGTCTGACTCTGATCAGGCAGACCTTCCCCCTGCCCCAGAACACCAGCCAGCGCTGTGTCAAGCACAACCACCGCATCAACACCTCCCTCTGTGACCCCAAAGACCCCAAGGCTCAGACActggagATAACCAACCGCTACATCTACGACACGGTGCTGCTATTGGCCAACACCTTCCACAGGAAACTGGAGGACAGGAAGTGGCACAGCATGGCCAGCCTCACCTGCATCCGCAAGAACTCCAAGCCCTGGCAAGGCGGGCGCCCCATGCTAGACAACGTCAAAAAGTCTGGAGTGAGTGGTCTGACCGGCTTCCTGGAGTTTACTGACAACGGAACCAACCCCAACATCTACTTTGAGATCCTGGGGACCAATTATGGCGAGGACAGGGGGAGGGGTGTCATCAAGCTGGCCACCTGGGATCCAGTGCATGGCCTCAATGGAACACTAACTGACAGGAAGTTGGAGAACAACATGAGAGGTGTGGTTCTGCGCGTGGTCACTGTGCTGGAGGAGCCCTTTGTGATGGTGTCAGAGAATGTCCTTGGGAAGCCAAAGAAGTACCAAGGCTATTCCATCGACGTGCTGGATGCTCTCTCCAACTACCTGGGCTTCAAGTACGAGATCTACGTGGCCCCTGACCATAAGTATGGGAGCCAACAGGCTGACGGGGTCTGGAACGGTCTAATCGGAGAGTTGGTTGCCAAGCGTGCTGACATGGGTCTCTCGGCTCTCACCATCACACCAGAGCGGGAGAGTGTGGTGGACTTTACCACGCGCTACATGGACTACTCGGTGGGCGTGCTGCTCAGGAAGGCTGAACGCACCGTGGACATGTTCGCCTGCCTGGCGCCCTTTGACCTGTCGCTATGGGCATGCATCGCGGGCACGGTGCTACTGGTGGGCATACTGGTCTACCTGCTCAATTGGCTCAACCCGCCGCGCCTGCCCATGGGCACcgtctcctccaccaccctctacAACTCCATGTGGTTTGTCTACGGATCATTCGTCCAGCAGGGTGGTGAGGTTCCGTATACCACCCTGGCCACGAGGATGATGATGGGGGTATGGTGGCTCTTTGCTTTGATCGTCCTCTCCTCCTACACGGCCAACCTGGCTGCCTTCCTCACCATCAGCCGTATCGAGAACTCCATCCAGTCTCTCCAGGACCTGTCCAAGCAGACAGAGTTGCCCTACGGGACGGTGTTGGACTCGGCTGTGTACGAGCAGGTGCGCAGTAAGGCCATGAACCCCTTTGAAAGGGACCCCATGTACTCCCAGATGTGGCGTATGATCAACCGCACCGGAGGGGCCGACAACAACGTGGAGGAGTCCAAGGAGGGCATCCGCAAGGTGAAGTACGGCCATTTTGCCTTTGTGTGGGATGTGGCAGTGCTGGAGTATGTGGGCATCAACGATGAGGACTGCTCCTTCTACACTGTGGGGAACAAGGCACCAGACCGGGGATACGGCATCGCCCTGCAGCACGGCAGTCCATACAGGGACATCTTCTCCCAGAGgatccTGGAGCTGCAGCAGAACGGGGACATGGACATCCTGAAGCTGAAGTGGTGGCCCCGGGACAGCCCGTGTGACCTGTACTCTGCGGTGCACACAAAACACCGCGGCAGCGCCCTGGACATCCACAGCTTTGCCGGCGTGTTCTGCGTGCTGGCGGCAGGTGTGGTGCTCTCCTGTCTCATCGCCATGGTGGAGACCTGGTGGACAAGGAGGAAGGGCTCACGAGTCCCCTCCAAAGAGGATGATAAGGAGATCGACCTGGAGCACCTTCACCGCCGGGTTAACAGCCTGTGCACAGAGGACGACAGCCCCCACAAACagttctccacctcctccattgACCTGACGCCACTGGACATGGACTCTATGCCGGCCAACCGGCAGGCCCTGGAGCAGATCAGCGACTTCCGAAACACGCACATCACCACTACCACCTTCATCCCTGAGCAGATCCAGACCCTCAGCCGCAGCCTGTCTGCCAAGGCCCAACAGGGCTTCGCCTTTGGTCCCGTGCAGGACCACCGGACTGGGGGGCCCTTCAGGCAGAGAGCCCCCAACGGAGGCTTCTTCCGCAGCCCCATCAAGACTATGTCCTCCATACCCTACCAGCCCACTCCCCAGCCCAACTTCGGCTACGGCAACGACCCAGACCGGGGCACGTCCATATGAGGCGAGAAGGAGTAGGCCGCacagcgagagaaagatgaaATTAAACGCACTcaaaaaaatctatgtacatAGGAATCTTTTTCAGTTCTGATTTTTTGAGGGGCTTTGCTTTTGTTTGGTGGGGGTTTTCCTGCTGAAACCTGGTGGTGAGAGGTCGGGGACTTGAATATTTGCTTTATTGTCATCTTTCTCATGGTTGTCTAGGGATCTTTTGGGTGTGACGGGGCTCTGTTTTCTCTTTTTCGTTTCATGGCATTTGAGGACTGCCTTTCTGAAGAAGCTTTTGGACCCAACAAGGAGGATATGTATTTGTTTTTTACAACAGAAAACACTTCTCTGTTCTTGAGATCTACAAATCGGCAACAACCCTATGCTCATTTGAAGGATGTTCTTGTCTTTGCCTTTCACCATATGGGACTCCATCCCACTCAGTTCTCTGGTGTTGATCATCAATGCCTGTACTCCAAATCTGAAATCTGCACCAAAATAGGTGTCCATTGGCTCCACTGCCCTGCAGACTGAGACCTCACTGTCTGAGCTTTGGGCACGCTTCGTCATTTTTGTGCACATAAGGCTCCATCAATTCCACTGCACTGTACCAGTGCCCATTGACCTGTATTTGATTGTATGTAgtttggatatttttttctcacctgTACTGTGCTGTCTATTTCAAGGTGAGCGCCTCAGCCTCTAAACAAACACTTGAGAGATGCATAGAGGGACAAAAAGGAACTGAAAATATAAGATAAAAGACAACAGAAAAAGGACTTTAAAAAGCAGCTGAGGCTATTGTATGTATTTTATTGAATTTGTTTTGAAAATCTATTTCAATCCGTGGAATGTGTTTGGTGAGAaagtcacacaaaaaaaatgtttggaGCTGtctcattgttttttttttctaccaATTTTGAAAAGCGCTAAATGACTGCTATAGTCTTACTCTGGTTTGCATCATTAATCATAttcaaaaacgttttttttaaaaCCTAATTTGTAGTTCTACCAGGGCTCAGTCAGAAAAAAAGTCACATTTCATTCTCCAGTCCACTAACTGACTGTTGTGTACCTGTAAGGGCAAACAGTTGAGCTCAGAGTGAGGAGAACCCCTTTCAGATAACATCCACAGTACAAGCCATATCATTGCAGGCTGGCTTCACCTTGCCAGTTTCCTGCTTCAACAGGATTTCTTGCCATTGGAACTGTAGAGCTGATGGCATTCATTTTGAAAGATCTTTCTTCATTTCTTAAATGTTAAGGGTACTGTTTATCTAACTTTTTTTAAAGTGCCAATTGTTTAAATGAGGCCATTTAGGTGCAGtttggggggagggggtcaaaaaaaacaatattttgtgAAGGGAAAAGTGGAACCTAACCTTTTCACTAACACTGTATTAATATTTAATAATGTTTGTTGTTTAGAATGAGCTTTCAGTTTGTTATCTTAAGACTAAACCGCAAATGTTGTGCGTAGAGAACCGAAGCAGTGTTTGATGCAAGCATTCTAGATGTCCTTTTCTTAAGCTACAGTATGGCTATTGAATGACAATAGGACACAGACAATGTTTAAAGAAATTTTATTTACTATTAATGACAGACACATTATgaaatatgtatattttatatGTTGATGCTATATTTgtttaaaaaagaataataatataTCATATGAGCATCGAGTTAGCAGTCACCCTATACATTTGGTTTCCTTCAGTTCCAGCCCACACATAAGCTTTCTCATGTCATCTTGAGTTCATTTTGATTTGCTGGTTAATAACAGAGGAGGCAAGTTCTTAAAAAGAAGCATGCACAACTTGCTATGCCCGtgacatgttttatttcataCATAGAACGTACAGGATTACTTGATCAATTTTCAACTGATTATAATGTGCAGTATTTAATATAGGCCTATTTTGTTGTATATGTGTTGCATATTATTCAAACGGAACAATCTGAGGCCTCTGTTACAAGTGGCAAAGCTTTCTGTGTATAATTTGTCTAATAAACTTGTTTTCTACAGCGGTA

Function

GO:

id name namespace
GO:0035235 ionotropic glutamate receptor signaling pathway biological_process
GO:0034220 ion transmembrane transport biological_process
GO:0005887 integral component of plasma membrane cellular_component
GO:0045211 postsynaptic membrane cellular_component
GO:0030054 cell junction cellular_component
GO:0005234 extracellularly glutamate-gated ion channel activity molecular_function
GO:0004970 ionotropic glutamate receptor activity molecular_function

KEGG:

id description
K05207 GRID2; glutamate receptor delta-2 subunit

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1113061 lncRNA upstream 134 40187916 ~ 40188188 (+) True G977409
TU1113057 lncRNA upstream 3638 40184447 ~ 40184684 (+) True G977405
TU1113055 lncRNA upstream 4506 40183587 ~ 40183816 (+) True G977403
TU1112791 lncRNA upstream 61076 40126985 ~ 40127246 (+) True G977156
TU1112781 lncRNA upstream 84865 40103231 ~ 40103457 (+) True G977146
TU1113920 lncRNA downstream 19095 40763089 ~ 40763349 (+) True G978246
TU1113993 lncRNA downstream 114950 40858944 ~ 40862847 (+) True G978312
TU1113977 lncRNA downstream 130636 40874630 ~ 40876037 (+) True LOC110535697
TU1114005 lncRNA downstream 132682 40876676 ~ 40876937 (+) True G978324
TU1114013 lncRNA downstream 141714 40885708 ~ 40890102 (+) True G978329
XM_021620867.2 mRNA upstream 36595 40041739 ~ 40151727 (+) True ccser1
XM_036935464.1 mRNA upstream 41115 40041739 ~ 40147207 (+) False ccser1
XM_021620868.2 mRNA upstream 41146 40041739 ~ 40147176 (+) False ccser1
XM_036935466.1 mRNA upstream 149568 40015466 ~ 40038754 (+) False LOC110535019
XM_021622364.2 mRNA downstream 4741 40748735 ~ 40750507 (+) True LOC110536622
XM_021620874.2 mRNA downstream 43333 40787327 ~ 40814363 (+) False LOC110535695
XM_036935469.1 mRNA downstream 43333 40787327 ~ 40814363 (+) False LOC110535695
XR_002475296.2 mRNA downstream 43333 40787327 ~ 40815032 (+) False LOC110535695
XM_021620873.2 mRNA downstream 43334 40787328 ~ 40814363 (+) False LOC110535695
TU1111560 other upstream 1130311 39057676 ~ 39058011 (+) True G976017
TU1109485 other upstream 2125222 38057798 ~ 38063100 (+) True G974184
TU1109353 other upstream 2144992 38042706 ~ 38043330 (+) False LOC110535015
TU1109354 other upstream 2149611 38020449 ~ 38038711 (+) False LOC110535015
TU1109337 other upstream 2352987 37831521 ~ 37835335 (+) True lztfl1
TU1113929 other downstream 23842 40767836 ~ 40768229 (+) True G978255
TU1114082 other downstream 259082 41003076 ~ 41016088 (+) True G978396
TU1115468 other downstream 1334498 42078492 ~ 42078855 (+) True G979689
TU1115777 other downstream 1784526 42528520 ~ 42533308 (+) True G979965
TU1115850 other downstream 1887830 42631824 ~ 42636709 (+) False G980019

Expression Profile