RNA id: XM_021622364.2


Basic Information

Item Value
RNA id XM_021622364.2
length 1773
RNA type mRNA
GC content 0.47
exon number 1
gene id LOC110536622
representative True

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 40748735 ~ 40750507 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CGCGTGCCGCTTTTTAAAGCGATGCCGCGCCTTGAGACACTAGAGAAGGAGTCCTGCACGCGACATAGTGCGAGCACTGTGTGCAAAATAAACGTTCTTCACAGCATTTTATATTTTGCTAAGTTCTTAGTCCAAGCCACCTgatttatagtttttttttttaaatggatgtTATCAGTGTTGAGGAATGGAGCAAAGGCGCAAAGATGTGCGAGGTGCAGCACTCAAAAATGGAGAGGGGGGAGCAGAGCGAGTACCCATCAAGTCTGGCACTCATGGACAGCAGTGACCCACGCGCCTGGCTGGCTCCCATGCAGTCTGGCACCTGTGCGGCACACGCCGACTACCTGCTGCACTCGCCCAGCTCCAGCTTGGAAGGCGGGTTCCCCACATCCGGCCACAGCCCAAATTTTAGAAAGAGTTCCAATAGTCCGCTCAAAGTGCGGGACTTGTGTCGGCTAAAGGGATCGGTAAGCGCCGAGGAGGGCAGACAGAGAGCTCCATCCAATCCCGGTAACGTTGTGCAGAAGGTGAGGCGCCAGGCAGCCAACGCGCGGGAGAGGAGACGGATGCATGGCTTGAACCATGCCTTTGACGAGCTGCGCAGTGTCATCCCTGCTTTCGACAATGACAAAAAGCTTTCCAAATACGATACCCTGCAGATGGCCCAGATCTACATAAACGCGCTGGCGGACCTGCTCCAGGGTCCCGGTGTGGACTCGCCAAAGTGTGACCTGTTGTCCGCCACGGAGAGTCCCCGGGGATCCTCCGCCTCCGCCTCCACCTGCCAAAGGGACGCAGGCACTGGGCTACCGGTCCAGCTTAACGGGATCCCATTCCCAGTCGAAGACTGCTCGTTCTCTACTTTGATGGAGCAAGAAATGCGGTCTCCCTCGGGGACACCCAGTTCCAGCTCTGAGAGCAGAAAGGACTCCCTCCAGTCGAACCGCAGTGACGGCGAGTTCTCCCCGCACTCCCATTTCAGTGACTCGGATGAGATGCAGATGGAGCTCCTGAGCGAAGATGAGCTCTCTGAACTTAAGCTTTCCAGCCTTCACAAATATTGAGACTTTCAAAACGTGTCAATCATATCTGCTGGCATATGCCTACATTTTATACGATAATAGATTGCTTTCCAAAATCATTTTGTTTGGTTTGAGAGTTATATTTGATCAACTGTTAGATAAAGATGATTTTATGTCAGATAATTTGGTTCTGCCAATTACATTTACCGTCTCCTCGGGACCAGGGAAAGACCCCTTTGCCATGTCGACTGTCGCGCGCAGCATTGCCACGGGCTTTCCCAATCCCACGTCATGGACAAAACGTAGTCTTCCAAGAATTTGCCTGATATTATTTATGTACAGACCTTTGTAATTATATTTTCCATATAGCACACTGCTCATGATTtaattgtttatttgtttgtaaaTGTCCCTGTATTAATTTGTTTGCGACTTCTAAAGTTAACAATGCGCACTTTAAAACACGAGTCAGAGGCTTGGAGCAACATGACTTTGTTATTGAACAACAGTTTtttttgtagtagtagtaggcctaATGCCAATTTAATATTTCATTTAGCCATGTTTTGTTCTTTTTGGCTATTCACTTTAAATTAATTTATGTGTCTGTGCTTTCATTGGATGATTTAAGTTGATTTATTCCTAATTGTGTTCTATTGTTTTTCCAATTGAATGTGTCATTTCAAATGTTTCTAAAACCTAGTGATTTACCATTAACTGGTtaattttcttttgattttgagAATAA

Function

GO:

id name namespace
GO:0035675 neuromast hair cell development biological_process
GO:0048923 posterior lateral line neuromast hair cell differentiation biological_process
GO:0042668 auditory receptor cell fate determination biological_process

KEGG:

id description
K09083 ATOH1_7; atonal protein 1/7

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1113061 lncRNA upstream 560547 40187916 ~ 40188188 (+) True G977409
TU1113057 lncRNA upstream 564051 40184447 ~ 40184684 (+) True G977405
TU1113055 lncRNA upstream 564919 40183587 ~ 40183816 (+) True G977403
TU1112791 lncRNA upstream 621489 40126985 ~ 40127246 (+) True G977156
TU1112781 lncRNA upstream 645278 40103231 ~ 40103457 (+) True G977146
TU1113920 lncRNA downstream 12582 40763089 ~ 40763349 (+) True G978246
TU1113993 lncRNA downstream 108437 40858944 ~ 40862847 (+) True G978312
TU1113977 lncRNA downstream 124123 40874630 ~ 40876037 (+) True LOC110535697
TU1114005 lncRNA downstream 126169 40876676 ~ 40876937 (+) True G978324
TU1114013 lncRNA downstream 135201 40885708 ~ 40890102 (+) True G978329
XM_021620869.2 mRNA upstream 4741 40188322 ~ 40743994 (+) True grid2
XR_002475295.2 mRNA upstream 7146 40188321 ~ 40741589 (+) False grid2
XM_021620870.2 mRNA upstream 9245 40188321 ~ 40739490 (+) False grid2
XM_021620867.2 mRNA upstream 597008 40041739 ~ 40151727 (+) True ccser1
XM_036935464.1 mRNA upstream 601528 40041739 ~ 40147207 (+) False ccser1
XM_021620874.2 mRNA downstream 36820 40787327 ~ 40814363 (+) False LOC110535695
XM_036935469.1 mRNA downstream 36820 40787327 ~ 40814363 (+) False LOC110535695
XR_002475296.2 mRNA downstream 36820 40787327 ~ 40815032 (+) False LOC110535695
XM_021620873.2 mRNA downstream 36821 40787328 ~ 40814363 (+) False LOC110535695
XM_021620872.2 mRNA downstream 36821 40787328 ~ 40815032 (+) False LOC110535695
TU1111560 other upstream 1690724 39057676 ~ 39058011 (+) True G976017
TU1109485 other upstream 2685635 38057798 ~ 38063100 (+) True G974184
TU1109353 other upstream 2705405 38042706 ~ 38043330 (+) False LOC110535015
TU1109354 other upstream 2710024 38020449 ~ 38038711 (+) False LOC110535015
TU1109337 other upstream 2913400 37831521 ~ 37835335 (+) True lztfl1
TU1113929 other downstream 17329 40767836 ~ 40768229 (+) True G978255
TU1114082 other downstream 252569 41003076 ~ 41016088 (+) True G978396
TU1115468 other downstream 1327985 42078492 ~ 42078855 (+) True G979689
TU1115777 other downstream 1778013 42528520 ~ 42533308 (+) True G979965
TU1115850 other downstream 1881317 42631824 ~ 42636709 (+) False G980019

Expression Profile