RNA id: XR_002475296.2


Basic Information

Item Value
RNA id XR_002475296.2
length 4210
RNA type mRNA
GC content 0.52
exon number 23
gene id LOC110535695
representative False

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 40787327 ~ 40815032 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tcattgttctatctgtggtaaCATGGTGCCGGAAGTGTAAAGCCGGTTTCGGCTTTAGTATCTTTTTTTTCTTACTATTGGTCCATTCCTGAGTTATCTTGTCCAATAGATAGCGTTTTTATAGTCTTTCGTCGCAGTGTGAGTTCGCGGGGGAAATAAGATGTTTTGTAGCTACAGTTTTAACTTGTATATCTAAATTAATAAACGCATTTTGAAATGTGTTATTGGTGAGTTTATCGTTAGATATTTTGAGTACTGACATACTTAAACTGTTGAGATCGGCTTTCAAACGAGTAACACGTGACTGGCTTGCTAGTTAACGGTATTCATACAATTCATGGTAATCGTAGCTAGCCAGCTTTCGATAGCCAGAATAAGGAATATTTTGTACCGAGACAAAGAACTCACCTCTCTTGCGTGCTAGCTGTGTAACGTTTAGTACTTGCCGTTTGAAAATGAGTCTCTTTAATTTAGAGCGGTTTCGTTTTGACAAGAATAAACCGACATCAAACCAGGACAAATACAGCGGTTCCGTATGTCCAGAGTCGGGAAAGGAGAATAAACCAGCCCGAGTAACAACACCTGTATCCAACCTTGGAAAACCTGGGCGGGGAGTAGTATTTGAAGATGTCATCAGTGACTCTGACGATTTGGCAAGTGACTCGAGAAGTGATAAATTAACACAAAGGGTGACGGAACCTGTAAAGGAATCACTGAAGCAAGAGGTAAGAGAGATGACTGAGACATCTGATAAGGAAGACAAAATGGACAAGGATCTGGAAGAGAGACTGGCCAAACTGCAGGAAATCTTCCCTCAAAGAGACGGGAAGGAGCTGCTGGAGGTGATTAAAAGCACAAGCACTTTGGATGGTGCCGTAGCCTCATGCCTGATGTTTGGTGACAAAGACTCAACGCGAAAGAGGAAACAGGATGGCTCCAGCAGTTCCCAAGACAGCGACGTGGTTCCACAGCCCAGTAAGAAGAGGAGATCGTCTCTGCCTGAAGACTCTGAGGAGGGAGCAGAGCCCAGCTGGGAGAGACGGGAGGCCATGGTCAGGAAACTGCAGAGGAAGTTCCCCGACCAGGATAAGGAGGAACTGAGGTCCGTGCTCCAGGAACATGAGTGGAATGTGGATGACGCCCTGGAGGTGCTGCGCATGTTCTCGGACACAGATGAAGACTCTAGTGCACCTGAAGTATCCAGCTCCCCTGAAGTCAAGCAAAAGGAACTGAATGCCAAGAGTAATGCCAAACCAAGCAAAGCAAAGAGTGATGCCAAGCCGAGCAGAGACCGCTGGGAGTCTAAGGATAGCAAGGAGGAGGCCAGGCGAAGCAATGCTTCCGCTCTGAAATGGCTGTTCAAGAAACCTGCACCTGAATCTAGGCCTaactcctcgtcctcctcttcgacTTCTACCAGCCAGAAGCTCTCCAACGGGACCAGCGTGGCTAAGAAGGAGGCttcggagaggaagaggaaggttcGCGCCTCATACGAAAGGGCCAGCAGCTCGGAGGATGAGGACACAGAAGGGGCCAGCAGTGAGTTTGAGGGCGAGGACGACGAGCTAGATTTTGTGGCGGATGACGCGGGCACATCCACGCTCAAAGGCCAGATCCTGAGCTTCTTCCAGGAGGCCTCGCTGGATGAGCTGTCCCTCATCGCCGGCTGCTCGTTGAAGAAGGCCCAGAAGATTGTGGAGCTACGGCCCTTTGCTGTTTGGCAGGACCTGGAGGAGGTGTTCCACAAAGAGAACGGCCTGTCTGCAGAGCTGCTGCTGGGCTGCAGGGTGGTGCTGAGGGAGAGAGCCGTGGTCCAGGGCCTCATGTCCAAGTGCCAGACCATCTCGGGCAAGATGGTAAAGGGAGTCACCCAGGTCATAGACAAGGACATGGGCTCCATGACCCAGCCCTCAGTCCTCAACAGAAAGTTGCAGTTGAAACCCTACCAGCTGATTGGGCTGAAGtggcttctcctgctgcaccaaCACAAGCTGAATGGAATCCTGGCTGACGAGATGGGTTTGGGAAAGACCATCCAAGCCATAGCCTTCCTGGGCAGACTGCACCAGGACGGCATCGACGGCCCCCACCTCATCACTGTGCCCTCCTCCACCCTTGATAACTGGGTTCGTGAGCTAAAGCTGTGGTGCCCTAGTCTCAAGGTGTTAGTCTACTACGGCTCTGTGGAGGACCGGCGGTACCTGCGACATGACATCCTCAGCAATCAGGTGGACTTCAACGTCATCGTGTCCACCTACAATCTGGCCATCGGAAACGACAGCGACCGCAGTCTCTTCCGCAAGCTCAGACTGAAGTATGCCGTGTTCGACGAGGGCCACATGCTGAAAAACATGAACTCCCTCCGTTACCGCCACCTCATGGCCATCAACgcggaGCACCGGCTGCTCCTGACCGGCACCCCTCTGCAGAACAACCTGCTGGAGCTGATGTCGCTGCTCAACTTCATCATGCCCTCCATGTTCTCCAGCAGCACCACGCAGATAGTCAAGATGTTCTCCATGAAATCCCACGAGGAACAGAGTCGTTTTGAGAGGGACCGCATCGCCCAGGCTAAACTCATCATGAAACCTTTCATCCTCAGACGAGTTAAGAGCGAGgtTCTTAAGCAGCTGCCAGCGAAGGAGGAGAGGCTGGAATTCTGCACCATGAGCgagaagcagcagctactttaCCAGAACATGGTGGGCAAGCTCAAGAAGTCTGCCATCGGAGAGAAGAAAGTGCTGTGCAACGTGATGATGCAGTTGAGGAAGATGGCCAACCACCCTCTGCTCCACCGGCAGTACTACACCACAGAGCGACTCGAGGCCATGAGTCACCTCATGCTCAAGGAGCCGACCCATTTGGACGCGGACCCGGTGCTGATCCAGGAGGACATGGCGGTGATGTCGGACTTTGAGCTTCACCGGCTGTGCCAGCAGTACTCGTCGCTGCACAAATACCAGCTGGAGAAAGACCTACTGCTGGACTCCGGGAAGTTCCACCTGCTCCAGACGCTACTGGCCACACTTAAGACCAAGGGAGACCGGGTGGTACTCTTCAGTCAGTTCACCATGATGCTGGACATTGTGGAGATTCTGCTTAAACACCTGGGCCACCGCTACGTCCGACTGGATGGCTCCACACCCATAGCAGACAGGATTGTGCTGATTGACGACTACAACATGGACCCGGAGATCTTTGTGTTTCTGCTGTCGACGCGGGCGGGTGGCCTGGGCATCAACCTGACCTCGGCCAACGTGGTCATCATGCACGACATCGATTGTAACCCCTACAACGACAAGCAGGCAGAGGACCGCTGCCACAGATTGGGCCAGACTAGTGTCTGTCCATCTCCTGCTACAGGACTGTCCAGGTGATCAAGCTGATCCATAAGGACACCATAGAGGGTGGCATGCTGCAGCTGGGCCAGAAGAAGCTCAAACTGGAGCAGGACATGACCGCTGCCGAGGAGGGTGATGAGGGCACCATGTCTGAGGATATGGCCGTCCTCCTCAAGGCATCGCTGGGCCTGTGAGGGTCCGGGAGCTCCCTCCCTGGAGTTTCATTGGGACTCACCCTGGAGCATCCCACCCCTGACTgacctgactcactgactgactgaacccTGCCATAGGTGGGTCTTTCCCTGCTACTCACTCTGCCCTTGAGACCTGAGATGCAGCTGTGCACTTCCAACAGTCTGCACTGGAGatgatatggttgtgttgttgGGATTATTGGCCTTTGCTGTCAGTAGCAGAGATGGCGGGTGTCGTTGAAGGTCAGTGGCGACTCTGCTCTGTGCAgcacctggggtgtattcattaggaaGCAAAAGTGCCAAAACGGGGAGGGACTAACCTCAACTTGTCCAATCAATTATCGTTTTCAGTGCAAGCGGTTTTCTGTTGCAAATTGTTTTGCTATGGATTGCACTAATGAACACACCCCATACTCTGCTCTGAAACAATGCCAGGGAACAGTTTGTCAAAGCAACTCTGTCTGTGCTGCCTTATAGTGATACAATGAAGTCCTGCAGGGGACTGACTTCCAGGTGGTGACAGAGCTGCTCTGTTTATGTATCATTGTGATGTGACGTACTGTTGTCAAAACTTTTACTCGTCCGTTTGTAATTTTGATGTCCTTGTTGCAACATCAACAGGGTTTGTCGAAACATGAAATAAagatttcaatatttattttc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1113920 lncRNA upstream 23978 40763089 ~ 40763349 (+) True G978246
TU1113061 lncRNA upstream 599139 40187916 ~ 40188188 (+) True G977409
TU1113057 lncRNA upstream 602643 40184447 ~ 40184684 (+) True G977405
TU1113055 lncRNA upstream 603511 40183587 ~ 40183816 (+) True G977403
TU1112791 lncRNA upstream 660081 40126985 ~ 40127246 (+) True G977156
TU1113993 lncRNA downstream 43912 40858944 ~ 40862847 (+) True G978312
TU1113977 lncRNA downstream 59598 40874630 ~ 40876037 (+) True LOC110535697
TU1114005 lncRNA downstream 61644 40876676 ~ 40876937 (+) True G978324
TU1114013 lncRNA downstream 70676 40885708 ~ 40890102 (+) True G978329
TU1114034 lncRNA downstream 96221 40911253 ~ 40911476 (+) True G978350
XM_021622364.2 mRNA upstream 36820 40748735 ~ 40750507 (+) True LOC110536622
XM_021620869.2 mRNA upstream 43333 40188322 ~ 40743994 (+) True grid2
XR_002475295.2 mRNA upstream 45738 40188321 ~ 40741589 (+) False grid2
XM_021620870.2 mRNA upstream 47837 40188321 ~ 40739490 (+) False grid2
XM_021620867.2 mRNA upstream 635600 40041739 ~ 40151727 (+) True ccser1
XM_036935470.1 mRNA downstream 12022 40827054 ~ 40835309 (+) True LOC110535696
XM_021620878.2 mRNA downstream 30750 40845782 ~ 40876219 (+) False LOC110535697
XM_021620877.2 mRNA downstream 31314 40846346 ~ 40876219 (+) False LOC110535697
XM_021620881.2 mRNA downstream 98092 40913124 ~ 40921426 (+) True arrdc3a
XR_005034794.1 mRNA downstream 126968 40942000 ~ 40943238 (+) True LOC118937444
TU1113929 other upstream 19098 40767836 ~ 40768229 (+) True G978255
TU1111560 other upstream 1729316 39057676 ~ 39058011 (+) True G976017
TU1109485 other upstream 2724227 38057798 ~ 38063100 (+) True G974184
TU1109353 other upstream 2743997 38042706 ~ 38043330 (+) False LOC110535015
TU1109354 other upstream 2748616 38020449 ~ 38038711 (+) False LOC110535015
TU1114082 other downstream 188044 41003076 ~ 41016088 (+) True G978396
TU1115468 other downstream 1263460 42078492 ~ 42078855 (+) True G979689
TU1115777 other downstream 1713488 42528520 ~ 42533308 (+) True G979965
TU1115850 other downstream 1816792 42631824 ~ 42636709 (+) False G980019
TU1117647 other downstream 2845342 43660374 ~ 43715297 (+) True G981690

Expression Profile