RNA id: XM_021620881.2


Basic Information

Item Value
RNA id XM_021620881.2
length 4223
RNA type mRNA
GC content 0.43
exon number 7
gene id arrdc3a
representative True

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 40913124 ~ 40921426 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACGAAAGTTCCTTGTCTTTGACCAGAGACCAACGCGCAGACGGGCGGACGATAACAGCATCCACTGCTGTTATTAAGCCTTTACATCTAAATGAACTTTTGTCAAAGAAAGCCCTGATCATGCCCACTGCTTTTGCAGGGCAAAGATATTGATCGGCGTTTCAAATACATATTTTCTTTCTTCTTATGAGATTATTTTTTCATATACTTTCATTTTTCGGTAGGCtacctgtgtttttttttacaccatGGTGCTAGGAAAGGTGAAGAGCTTCACAGTCAGCTACGACTGTCTCAATGACAGCAATGTCCCCGTTTTCGCAAGTGGGGACTCGGTCTCAGGGAGGGTGATCATCGAAGTCACTGGAGAAATCCGTGTGAAATCTCTTAAAATTCATGCAAAAGGATTTGCGAAAGTTCGTTGGACTGAATCGCGAAATGCTGGCTCCAACACTGCCTATACGCAAAATTACACTGAAGAAGTAGAATATCTAAACCATAGAGACATCCTAATTGGACATGAAAGAGATGATGACAACTCAGAAGAAGGACTCACCACTATCCATTCAGGAAGACATGAGTATGCATTCAGCCTTGAGCTTCCACAGATACCCCTGGCTACCTCGTTCGAAGGGAAACATGGCAGTGTGCGCTACTGGGTGAAGGCTGAGCTACACAGGCCATGGCTTCTGCCCATGAAGACCAAGAAAGAATTCACAGTCTTCGAACACATCGACATCAACACTCCCTTACTGCTGTCGCCCCAGGCAGGCACAAAAGACAAGACTTTATGCTGCTGGTTCTGCACCTCAGGTCCAATCTCCTTAAGTGCCAAAATCGAAAGGAAGGGATATACCCCAGGAGAGTCTATTCAGATCTTCGCTGAGATTGAGAATTGCTCGTCTCGCATGGTCGTGCCAAAGGCAGCCATTTACCAAACACAGACCTTCTACGCCAAAGGGAAAATGAAGGAGGTAAAACAGCTGGTGGCCAACCTCAGAGGAGAGTCGTTGTCCTCGGGCAAGACGGAGACGTGGAATGGCAAAATGCTGAAgatcccccccatctctccctccatcttggaCTGCAGCATCATCCGAGTGGAGTATTCTCTCATGGTGTACGTGGACATCCCCGGAGCTATGAACCTGTCTCTGAACCTGCCACTGGTCATCGGCACTATCCCGCTGCACCCCTTCGGCAGCCGCACCTCCAGTGTCAGCAGCCAGTGCAGCATGACCATGAGCTGGCTAGGCATGGCCCTGCCAGAGCGCCCTGAAGCCCCACCAAGCTATTCAGAGATTGTGACAGAGGAGCAGAGACGGAGCCTGGAGGTGACCTCAGCCAGGGATGAGTTCGAGGGACCACTCTTTGCCTACATCCAGGAGTTCCGCTTCCAGCCTCCTCCGCTCTACTCTGAGatTGATCCCAATCCCGATCAAGCCAGCCGGACGGAGGAGCGGAGACCTGACACTTGTCCATCACGTTGAAGGAAACACAGAGCCCGGAGAAGTTTTGGGCGTTTCTAAGTCAActctgtttttgtatttttcttcccCCCGGTGACAGCGTTCGCACTCCGCCCGCGACGTCgagaggagagaaaaaacaaacaaacaaataccaCAGGGGAACAAAGCCCTGCCCCCTCCCACAGAGAAAGGCACAGGAAGTCTGCCTTCCTGCCTTGCCCGGGGAAAGGCCGGTCGAACATCCACCTAACCTGTGAggggggagaagaaaaaaaatctttaGTGGAGACAGCCTTGGTGGAGTGAGTGATGACACGCCAGGGCCATCTCTGCCTATGGCTCTTAATCGACCTCATCTTTTCTGTTACCACTGCACATGCGGACATGGCTTTCACATAGAGCAGAACTATGATGTCGAGACCTGAGcaggaaaaaaagaaaaacaggaAGAAGAGAATACAATATAACCACCACTGTCTGAAGCGCTCAGCGGCAGTCGGCAACGGAGCAAAGACTGGCCTCCTCCTGCCTCATTTGGGATTTTTGCACATGTTATTCTTTGCTTGAGTTGTGTGGCTCCATTTTAAGAAGAAGAAAATCAGCACTAATTGTTTTTCTTCTGCCTAGTAACAATGCTGGACTAAAGAGACTGCAGGCTTAACTCATAAACTCCTTATCCGCACAACTTCGAACAACGCAGAGAACATATTTGGACAAAAACAATGCACTGACCTTGTTTAAGCTGTTTTAAGATGTTATTTTTCCTTATTACATTTCCTTAATGACTTGTAGACTGGACTTGAATGCAGCAGAACACTCTCCATCCAAAAGCTCTTTTTCGATATTGCCTCCTCAGTTTGGTTCAAAGTGTGGCATCATTTTTTCTGGTTCTGTACTATGTTATGTCCTTTGATTTAGTTCCAAACTTAGAATGCCTTTTATGCCAAGCATTGTTTGCTTCGTGTTTATGTTGTGCTTGTTCTCGAGTAGAGGAGCCGCAGGCTAGAGCTTGCCACTCAAGTATAGCATGAAACGCagagaattgtgtgtgtgtgtgtgtgtgtgtgtgtgagtgtgtgtgtgaaacggAAAGAGTGGGACATATCAGAATTCGCACACTCTGTGTCTGCAGCCCCTCTACTCATAACACAGAGGCTTACATACTGCCTATAAAAAAGCACTGTCTCAGGTGATCTTCTCACTTGCCAAACGGTTGAAaaagaaaatgttttgttttaattGTACTGTTTGAAATAGTGAAAGGaggatttctttaaaaaaaaaaaagtatattaccataacaagagagaagagacatacacacagagcAGCAAGGCAGCTTTCCAAAATGAACGACATTCCCTTTTTGCCATCGCTGCACTTGCCGACTTCATTCACCAACTGTTTTTTTTTCCAGACCAGTGAAGCCTGAAATGCTAGAAttatatataatttaaaaaaaagtaagacCACATGGTATGATATGCTTCAAATAATGGGGCAGACACAAACCCAGCCTAGCTAAATGCTGGGGAAGAATTGGACGTTGCTAAAGCTCCGCTCAAACTGGCCAGAACAAGTAGTGGTAGGTTGAAATGAGTAATACATTGGTTTTCAAACTCATTCAACACCTAGACCAGTAATAGTGGAGATTTGGCATCGTCTTAAACATGAGGCACTTTTTTGATaaggaaaacattttaaaattgCATTGACAGTGAAGGTCTGTAAAAAGTTGGGCATCCACATCATTTCTTGATGAGACATTTAGTCAAGCAGTGTTTGTGTTGGACATAAATGCATTATTTCATCTTCTAAGACGTTTTTTGAAAGTTTACAGTTATAATTAGTTGAcaagtttgtatgtgtgtgtgtgtgctctgtttaGATCTAGCTAGCAACTATAAGAATATTGCTTACAGTGACAGAAAAAACTACAAATTAAAGTGATCTTATCTTAGTGGCCTTGACACAGAACTGACATAATTATGATGCTTCGTTATCAAGTGTCTAATTTACAACCTTACTCTTTTAGCTATTTTCTTTTCTTTGTATGTGTGATTAGTCCTTTCATGCTTTTCAAAGGGAcaaaaagggagaaaaaaatgTTCCTTTTAAAGaaatggattaaaaaatatatattttttaatgacgATCCCTGGACAAGCCTCTTTGTGTGTTTTTCTGAATGCGTTTAGTGATGACTGGGCTAGTTTATGTACTTGGGCATTTATGGTTTGTTATCCAGTCAGACAACCCCATTTCTACTCACCTTTCAGCTTCAGGGAACAGCTGTGGATCAGCAACCCTCCCTTCCCACAGAGAACGAATTAGCTTACAAATGGAATAGACCGCTAATTCTAAGATAAAAtcacttttgtttgttttgaTTTTTATCTTGGGGAATATGTATCAAGCTAAAGTACAAATGAATAAGCTTAAATCTGTTTCAGGTTGGTCAATTCTATAGTCCATTGTTCGGGCCTCAGTGTAGTCCAGTTTTTAAAAGCTAAATTCCTGACTTACTAAAGTGAGGAATTAAAACATTAGAAATGGGAGAGTGCATCTGAAATGTTTTAGAAACAAAGTGCAATATTACTCATTTGAATTAGTTTCATTCACTATTTGTATGTCTAATTTCTCCTTTTGTCTTTTTATAGTTTCTTTTTCACGATCATATAGATATTGTATGAATGTCCTGAATGATTGTAACCTTCTGTCTAGTATTTCTTTTGAgtttaataaacttttg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1114034 lncRNA upstream 1648 40911253 ~ 40911476 (+) True G978350
TU1114013 lncRNA upstream 23022 40885708 ~ 40890102 (+) True G978329
TU1114005 lncRNA upstream 36187 40876676 ~ 40876937 (+) True G978324
TU1113977 lncRNA upstream 37087 40874630 ~ 40876037 (+) True LOC110535697
TU1113993 lncRNA upstream 50277 40858944 ~ 40862847 (+) True G978312
TU1114041 lncRNA downstream 6502 40927928 ~ 40928133 (+) True G978357
TU1114070 lncRNA downstream 53997 40975423 ~ 40975839 (+) True G978386
TU1114072 lncRNA downstream 57322 40978748 ~ 41000277 (+) True G978387
TU1114175 lncRNA downstream 185240 41106666 ~ 41106988 (+) True G978479
TU1114184 lncRNA downstream 192954 41114380 ~ 41124123 (+) True G978488
XM_021620878.2 mRNA upstream 36905 40845782 ~ 40876219 (+) False LOC110535697
XM_021620877.2 mRNA upstream 36905 40846346 ~ 40876219 (+) False LOC110535697
XM_036935470.1 mRNA upstream 77815 40827054 ~ 40835309 (+) True LOC110535696
XM_021620872.2 mRNA upstream 98092 40787328 ~ 40815032 (+) False LOC110535695
XM_021620873.2 mRNA upstream 98761 40787328 ~ 40814363 (+) False LOC110535695
XR_005034794.1 mRNA downstream 20574 40942000 ~ 40943238 (+) True LOC118937444
XM_021620882.2 mRNA downstream 250708 41172134 ~ 41176136 (+) True lysmd3
XM_021620884.2 mRNA downstream 263674 41185100 ~ 41188623 (+) True mblac2
XR_005034629.1 mRNA downstream 644766 41566192 ~ 41567177 (+) True LOC110535023
XR_005034630.1 mRNA downstream 660301 41581727 ~ 41585824 (+) True LOC118936418
TU1113929 other upstream 144895 40767836 ~ 40768229 (+) True G978255
TU1111560 other upstream 1855113 39057676 ~ 39058011 (+) True G976017
TU1109485 other upstream 2850024 38057798 ~ 38063100 (+) True G974184
TU1109353 other upstream 2869794 38042706 ~ 38043330 (+) False LOC110535015
TU1109354 other upstream 2874413 38020449 ~ 38038711 (+) False LOC110535015
TU1114082 other downstream 81650 41003076 ~ 41016088 (+) True G978396
TU1115468 other downstream 1157066 42078492 ~ 42078855 (+) True G979689
TU1115777 other downstream 1607094 42528520 ~ 42533308 (+) True G979965
TU1115850 other downstream 1710398 42631824 ~ 42636709 (+) False G980019
TU1117647 other downstream 2738948 43660374 ~ 43715297 (+) True G981690

Expression Profile