RNA id: XM_021620882.2


Basic Information

Item Value
RNA id XM_021620882.2
length 1890
RNA type mRNA
GC content 0.47
exon number 3
gene id lysmd3
representative True

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 41172134 ~ 41176136 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gatTTGGTAACTAGGGACGACAATATCTAGTGGTCAATGCAAGAATTGGAGTTCCTATCCACGGACGTCATCACGTTAGTATTCTGTTGACGTGGCGTAGCTAAACAAACGAACGCCAGTAAACCGGGGGAAGAATGGATGTGGTTTAGGTCGTCGACGGAAAAGTGCTCATGTTTTCAGTGAAAAATGACTGGGAGAAGCCAGCACTATGGTTTCCAGTCAGCCACGACGATGCAGCCTGCCAATGGAGGACATGCCTACCTATTTGGGAACAGCGCTGAGAACGATCTtgctgaggaggatggagagagctaCGAGCTGCGCACCCGAGGCCGGGACCGGAGGAGCACCTCCAGGGAGAAGTCAGACGACATTATCCACCTGGTCCGAGACATTAAAGAAGGGGACACTCTGAATAGCTTCTCCCTGCAGTACCACTGCTCAGTAGCAGACATCAAGAGGGCCAACAACCTGTTGACAGAGCAGGACTTCTTTGCACTGAGATCCATCAAGATCCCTGTGAAACGTTTCAGCGTGCTGACAGAGACCCACAACACTGCTCCTCTCAAATCTGCTTCCCCCACAGGCCACCGACGCATCCACCAgccccccatctccacagagacttgcacagactcctcctcctcgtccacaGACAGTGTGGGCAGCTTCCTGCAGGAGAAGGACAAGGACATTGAGCTGCTGGTCAAGTCCACTGGCACCTCCAGAAGCAGCCTGAACGAGGTGGTCTCCTCCCTGACCCTCCAGCAGCCCTTATTACTGGGGGAGCCTGACTTCAAGCCTATCCTCAGGAAGGACCCCTACCATGGGGCAGACTGGGGCATGAGGTGGTGGATGGCGGTGGCCATCATGGTGGTGGTTGGCATCGTCACACCAGTGTTCTACCTGCTGTATTACGAGGTGCTGATGAAGGTGGACGTGAGCCATCACACCACCACGCCATTGGTCAATCCGAATGGCATGCAGAATGCCCAGATGCCTGAGCCTGTGGCAATCAATGGAGGGCCCAACTCAAGACCTCACGCTGGAAACGTACCTAAATCAGACTCACATGGACACAATGATGTGGATGACCACCTTGGCCCCAAGAAAGAGAAAACGTAGTGAGGGTGAGTCACACTTAAGGAGTGGGAGATATTTCTGAGCAGTTCTATATGGTACAAATTCTCTGAGAATAACTTTATGGGGAACAGAATCCATTGGAAAATTATGGAGGGGAATAACGGAATTTTCCgtggacatacagtatgtatgtttttttaaagtttttaaaGCACTTTTTCTTTTTGTTGCACAGAGGTACCCAACTGCTTATTGTCCCCTTTGTCAGCTAGCTGTTGGAACTGTTTCTGTAACGCTGTCTAAAGGGTTTGTGATacttgggatgtccctaccccTTAACCCCTAAGTTACCATATGAGGTTTCAACTTTAATGGGTTGATGTCAGAGTTGGACATCCCAATGACCCTGTCTGTCTAAAGTGAGGGTTATTTTCCTGGTCAGAAAAGTACTGATTGCTGCCACTTATCAATGACAGTAATTTGAGGAATATTGGTCTTATACTTTCAGTATTGTCTAAAATGTGTTACAAATCTTGAACATTgcttgtatatatttttttgcctgTCTAGGGAGAACTGAATTTTGACTCACAAAAACTATATTTCTACTTAGGGCATGGTGACAAAACAGGAAATGCACAATATTCCCAaacactagctagctatattCTAGTGAAATGTTATTTTAGTTCCTTTTCCTCATGTCCATTTCATAAAATCATGTAACAAACAGTATGTGCCTTCAACTTGTGGGACACTACAAAAGGCTGAAAAATTAGTATATTTTGAATAAATTATTGATGCTCA

Function

GO:

id name namespace
GO:0016998 cell wall macromolecule catabolic process biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1114184 lncRNA upstream 48011 41114380 ~ 41124123 (+) True G978488
TU1114175 lncRNA upstream 65146 41106666 ~ 41106988 (+) True G978479
TU1114072 lncRNA upstream 171857 40978748 ~ 41000277 (+) True G978387
TU1114070 lncRNA upstream 196295 40975423 ~ 40975839 (+) True G978386
TU1114041 lncRNA upstream 244001 40927928 ~ 40928133 (+) True G978357
TU1114297 lncRNA downstream 84907 41261043 ~ 41261242 (+) True G978586
TU1114299 lncRNA downstream 87666 41263802 ~ 41264028 (+) True G978588
TU1114397 lncRNA downstream 221192 41397328 ~ 41397623 (+) True G978681
TU1114410 lncRNA downstream 245356 41421492 ~ 41425683 (+) True G978694
TU1114455 lncRNA downstream 297468 41473604 ~ 41499222 (+) True G978735
XR_005034794.1 mRNA upstream 228896 40942000 ~ 40943238 (+) True LOC118937444
XM_021620881.2 mRNA upstream 250708 40913124 ~ 40921426 (+) True arrdc3a
XM_021620878.2 mRNA upstream 295915 40845782 ~ 40876219 (+) False LOC110535697
XM_021620877.2 mRNA upstream 295915 40846346 ~ 40876219 (+) False LOC110535697
XM_036935470.1 mRNA upstream 336825 40827054 ~ 40835309 (+) True LOC110535696
XM_021620884.2 mRNA downstream 8964 41185100 ~ 41188623 (+) True mblac2
XR_005034629.1 mRNA downstream 390056 41566192 ~ 41567177 (+) True LOC110535023
XR_005034630.1 mRNA downstream 405591 41581727 ~ 41585824 (+) True LOC118936418
XM_021620898.2 mRNA downstream 419400 41595536 ~ 41604715 (+) False LOC110535708
XM_036935486.1 mRNA downstream 423181 41599317 ~ 41604715 (+) False LOC110535708
TU1114082 other upstream 156046 41003076 ~ 41016088 (+) True G978396
TU1113929 other upstream 403905 40767836 ~ 40768229 (+) True G978255
TU1111560 other upstream 2114123 39057676 ~ 39058011 (+) True G976017
TU1109485 other upstream 3109034 38057798 ~ 38063100 (+) True G974184
TU1109353 other upstream 3128804 38042706 ~ 38043330 (+) False LOC110535015
TU1115468 other downstream 902356 42078492 ~ 42078855 (+) True G979689
TU1115777 other downstream 1352384 42528520 ~ 42533308 (+) True G979965
TU1115850 other downstream 1455688 42631824 ~ 42636709 (+) False G980019
TU1117647 other downstream 2484238 43660374 ~ 43715297 (+) True G981690
TU1118214 other downstream 3104789 44280925 ~ 44285969 (+) True G982236

Expression Profile