RNA id: XR_005034630.1


Basic Information

Item Value
RNA id XR_005034630.1
length 1595
RNA type mRNA
GC content 0.44
exon number 4
gene id LOC118936418
representative True

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 41581727 ~ 41585824 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tGGCTTGGCGTTCAGGATACAGGTAGCTTACCACCGGGAGCCACGTCCTGAGGGAGAGTGTGTCCAGAAGGACTCCTTATCATCAGGGACAACAAGGAGGCTCAAGCCCTGGAGATGGCAACCATACACCGGCCCCTACTCACCTGCATGGGCTCTAGCAACTCCACCCATACTTTGGGGCGGTGTGTCGCCTGCTCAAGCGCTGGCTGGGACCTCTTCAGTGATGACATAAGAGGACACTGCTGACCTGCTGGTGGCGTCCCTCTTCCTGCAGCCGTCCGCCTTCACTCCTCCAGGGTCTCCTCCTTCGCTTCCTCCACCTGCTCTCCTCCCTTCGACTGGAGAAACAACCCCCGGTGGTCAACCTCAACAACCAGCTCACcgGGGCTGACGACACTGAGATCAAGAATGACTTCATCTCCAGAGTTTCTGCCTGTCATGTTCGTTGCCACGCCCAAAGACAAGACGCTGTCAATCTGGACCAAATAGGCTCCATCTGGACAGGTTAGAACACGGACACACATCCAGTATAGTCACTAGTACAGTCATCCAATAGCATTGTACACAACAGCCCATTGTACACAACATAGTAACAGACTCAGACTTGAAAGAGAAGAAATAGAATACAAACTTGTATCAAATGATTGAACTGCGGTGTACTAACTCTCACACTGTCAAAGGccggcaaaaaaaataaaaaatcccgtCTGTGTATTGAGTAGTTTCGTCAAGGCTCTAAAGTGCGACCATTTTGGTCGCATATGCatctaaatattttgctgtgctaCCTACAATTGCAATTTTGGAGCACCAGTGCACCTACAAGAGAAATTACTCAGATAAGATTTTTTTCTAATAATTATACTTCACTCTACTGTTGTTTTCCAAGTGCCCTAGAGAAACGATTGAGTGAATATTCGTTAGCATCATGGTTGTACCATTTTTACAAtagcattttttaaaattgtttctAGCCCTAGCAGTCCAGAAGATATGACCCAAATTACCCGCACAACATTTTTTTCCTTCCTATAGCGGATTAGATGTCTGCGTTTTTACTTTCATAAACATGTCTCGGGCCATTCTTAAGCTACTCGTGGGCCATTCATTTACgccttgttcagtcatgttacctcattagctagctagctaacaaccggATAACTTTACCAGTATATTCAAACATTTGGGggcacagaaagaaagaaaaagggcTATATATTTTTCAGGAGATCAATGATCATAGTAATGAATGACGGATCTCTTGCATGTCATCACACACAAtgttcttaaagggatagttcacccaaattgcaAAATGAATCATTGGTTTCCTTATCCTAAAGTTTTAGCATTTCtggcacaaatcccatttaagtcatgggaccgatatgacattttttcGCGcgtcatgtccaaatcatccgaAAGTATCTCAAATCGAAGCTCAACAAAGTAACTAGTAGATGATTTGAACTTGTAACATGCTAGCATCATTCCTCTGACTttaatgggatttgtgccacgaATGCTAAAccgttagcatgtggaaacagtgccaggggaAACTGgatgctgtcataccttgtccaaag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1114959 lncRNA upstream 4665 41570821 ~ 41577062 (+) True G979204
TU1114955 lncRNA upstream 16534 41564785 ~ 41565193 (+) True G979200
TU1114953 lncRNA upstream 19720 41561596 ~ 41562007 (+) True G979198
TU1114951 lncRNA upstream 34844 41546616 ~ 41546883 (+) True G979196
TU1114948 lncRNA upstream 38282 41543118 ~ 41543445 (+) True G979193
TU1114991 lncRNA downstream 47413 41633237 ~ 41633469 (+) True G979235
TU1115004 lncRNA downstream 63196 41649020 ~ 41702046 (+) True G979247
TU1115039 lncRNA downstream 130924 41716748 ~ 41751955 (+) True G979282
TU1115224 lncRNA downstream 223698 41809522 ~ 41809776 (+) True G979460
TU1115308 lncRNA downstream 343855 41929679 ~ 41933856 (+) True G979541
XR_005034629.1 mRNA upstream 14550 41566192 ~ 41567177 (+) True LOC110535023
XM_021620884.2 mRNA upstream 393104 41185100 ~ 41188623 (+) True mblac2
XM_021620882.2 mRNA upstream 405591 41172134 ~ 41176136 (+) True lysmd3
XR_005034794.1 mRNA upstream 638489 40942000 ~ 40943238 (+) True LOC118937444
XM_021620881.2 mRNA upstream 660301 40913124 ~ 40921426 (+) True arrdc3a
XM_021620898.2 mRNA downstream 9712 41595536 ~ 41604715 (+) False LOC110535708
XM_036935486.1 mRNA downstream 13493 41599317 ~ 41604715 (+) False LOC110535708
XM_036935485.1 mRNA downstream 16376 41602200 ~ 41604715 (+) True LOC110535708
XR_005034631.1 mRNA downstream 40453 41626277 ~ 41632041 (+) True LOC118937352
XR_005034795.1 mRNA downstream 83972 41669796 ~ 41699250 (+) True LOC118937445
TU1114082 other upstream 565639 41003076 ~ 41016088 (+) True G978396
TU1113929 other upstream 813498 40767836 ~ 40768229 (+) True G978255
TU1111560 other upstream 2523716 39057676 ~ 39058011 (+) True G976017
TU1109485 other upstream 3518627 38057798 ~ 38063100 (+) True G974184
TU1109353 other upstream 3538397 38042706 ~ 38043330 (+) False LOC110535015
TU1115468 other downstream 492668 42078492 ~ 42078855 (+) True G979689
TU1115777 other downstream 942696 42528520 ~ 42533308 (+) True G979965
TU1115850 other downstream 1046000 42631824 ~ 42636709 (+) False G980019
TU1117647 other downstream 2074550 43660374 ~ 43715297 (+) True G981690
TU1118214 other downstream 2695101 44280925 ~ 44285969 (+) True G982236

Expression Profile