RNA id: XM_021620898.2


Basic Information

Item Value
RNA id XM_021620898.2
length 1579
RNA type mRNA
GC content 0.49
exon number 6
gene id LOC110535708
representative False

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 41595536 ~ 41604715 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCCACTGCATtagccatcacacacacacacagtaggaccTACCAACCTGCTGTCACCCAGTCATAATACAGGAGGTTAGCTGAGCAGCACTGAACCATGGGAAAACAGAAGATATTCATGGACAAGCTGGCACATACTTTCCAGATCCGTAACTTGCTGCTGCGCCAGGCCATGGCAGAGTGTCTGGGTACCCTCATCCTGGTGATGTTTGGTTGTGGTGCAGTGGCTCAACTGGTGCTTAGTGGAGGATCTCATGGCATGTTCCTAACTGTCAACTTTGCTTTCGGCTTCGCTGCCACCCTAGGGATCCTGGTCTGTGGCCAGGTATCAGGAGGCCATCTCAATCCGGCAGTAACCTTTGCCCTCTGCCTGCTTGGGAGAGATCGCTGGAGAAAGTTTCCAGTCTACTTCGTCTTCCAGACACTGGGAGCTTTCCTGGGCTCCGGGATCATCTTTGGTCTGTACTATGACGCTCTGTTGAACTATGCTGGAGAACTCATTGTTACCGGGCCCAACGCCACCGCTGGCATCTTCGCCACCTACCCTGGCAAACATCTCACATTGGTCAACGGCTTCTTCGACCAGACGATTGGCACTGCAGCATTGATCGTCTGTATCCTGGCCATCGTGGACCCCCATAACAATCCCATTCCCCAGGGCCTGGAGGCCTTCACGGTGGGCTTTGTGGTGCTGGTCATCGGCCTGTCCATGGGCTTCAACTCTGGCTACGCTATCAACCCTGCCAGGGACCTGGGGCCACGCCTCTTTACCGCTCTGGCAGGCTGGGGCACCGAGGTCTTCACtgcCAACAAGTGCTGGTTCCTGGTGCCCATCTTCGCCCCATTCCTGGGCGCCATCATTGGTGTGGTGGTCTATCAGCTGATGGTTGGCTTTCATCAGGAGGGAGAGGTTCGTGACAGGAAGAGCCAGGATGAGAGAGTTAAACTGACCAACATCAACTCAAAGGACGTCCTAAAGGAAGAGATGTTATGAGCCTCAAAACCTCCAGCATCCTCCattctccaccactaccactaccagcaTCCTATACCCCTAAACTCAGCCTCAGTGGGGTACAGTATGGTCTCCTTGAGGGCCGGTGGGTCCCTTTTCACTCTTAACTCTGACAGCGGTGTGTCTGTTAGTCTGTAAGGAGACAACTACAGTACGCACACACATTATGGACCTCAATCTTTCTCTATAATGTTGCCACAGTATATCTATCTCTAGGCGTCCTTTGTCTTACATTGTAGCTGCATAGTGTCCTTAAGTAAGAGGGGAGGAAGTAAACACTCAAACACAGAATTATATTAATTCAAAATGTTTGGAAATAATCAAAGTTTATAGCCTAGTGTCTTTATCTCTTCTGTTTGGACCGTATTTGATGTTTTATACTAACATAGCGTTTTAATGATTCCGTTGTATTTATATGCTGTGGACAGATAGTACATGTGTCCCGATCAAATGAAATGTGTACGTTTTAGTGAGTCCATGAATTTCAATGTCAACCAGAGGCCTCATGCCATAAGATTTttatactttattttttattaattactAAACTTCATTTTTAAGCCCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1114959 lncRNA upstream 18474 41570821 ~ 41577062 (+) True G979204
TU1114955 lncRNA upstream 30343 41564785 ~ 41565193 (+) True G979200
TU1114953 lncRNA upstream 33529 41561596 ~ 41562007 (+) True G979198
TU1114951 lncRNA upstream 48653 41546616 ~ 41546883 (+) True G979196
TU1114948 lncRNA upstream 52091 41543118 ~ 41543445 (+) True G979193
TU1114991 lncRNA downstream 28522 41633237 ~ 41633469 (+) True G979235
TU1115004 lncRNA downstream 44305 41649020 ~ 41702046 (+) True G979247
TU1115039 lncRNA downstream 112033 41716748 ~ 41751955 (+) True G979282
TU1115224 lncRNA downstream 204807 41809522 ~ 41809776 (+) True G979460
TU1115308 lncRNA downstream 324964 41929679 ~ 41933856 (+) True G979541
XR_005034630.1 mRNA upstream 9712 41581727 ~ 41585824 (+) True LOC118936418
XR_005034629.1 mRNA upstream 28359 41566192 ~ 41567177 (+) True LOC110535023
XM_021620884.2 mRNA upstream 406913 41185100 ~ 41188623 (+) True mblac2
XM_021620882.2 mRNA upstream 419400 41172134 ~ 41176136 (+) True lysmd3
XR_005034794.1 mRNA upstream 652298 40942000 ~ 40943238 (+) True LOC118937444
XR_005034631.1 mRNA downstream 21562 41626277 ~ 41632041 (+) True LOC118937352
XR_005034795.1 mRNA downstream 65081 41669796 ~ 41699250 (+) True LOC118937445
XR_005034632.1 mRNA downstream 110415 41715130 ~ 41760853 (+) True LOC118937354
XM_036935489.1 mRNA downstream 541285 42146000 ~ 42156152 (+) False LOC110535709
XM_021620900.2 mRNA downstream 544779 42149494 ~ 42156152 (+) False LOC110535709
TU1114082 other upstream 579448 41003076 ~ 41016088 (+) True G978396
TU1113929 other upstream 827307 40767836 ~ 40768229 (+) True G978255
TU1111560 other upstream 2537525 39057676 ~ 39058011 (+) True G976017
TU1109485 other upstream 3532436 38057798 ~ 38063100 (+) True G974184
TU1109353 other upstream 3552206 38042706 ~ 38043330 (+) False LOC110535015
TU1115468 other downstream 473777 42078492 ~ 42078855 (+) True G979689
TU1115777 other downstream 923805 42528520 ~ 42533308 (+) True G979965
TU1115850 other downstream 1027109 42631824 ~ 42636709 (+) False G980019
TU1117647 other downstream 2055659 43660374 ~ 43715297 (+) True G981690
TU1118214 other downstream 2676210 44280925 ~ 44285969 (+) True G982236

Expression Profile