RNA id: XR_005034795.1


Basic Information

Item Value
RNA id XR_005034795.1
length 1469
RNA type mRNA
GC content 0.48
exon number 3
gene id LOC118937445
representative True

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 41669796 ~ 41699250 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gggtgtgtgtgtgtttattctctGCGAGTAAAGAAGGAAAGGCATTTAGAAACGGAGGAAAAGTGTACAGTTTGGGTCTATGGGACAATGGACCCAGTTAATCTTATATCAGTAATAGTTAAGGTTTACAACATTCTGCTGGTAAATGTTGCTAAATAGCAGCCTATTCCATTTGTAAAGGACAACTTTACCTGATAGGTCAGCTGGATCGCCCGGCCCCGGGTGCCTCGGCTCCGAAAATGAGAAGCCCCGCTCGGCTCCCCTGCCGGCGACCGGGAGCAACCCTTGCCCGCGCCCGCCCGATGATTAATGCCACCCCCGTCCAGCCACAAACCTTTCTGCCGCAGATAATGCCAGGCAGCAAGCACGCCTGACACTTTTAATGTATAATTAAGTAGAAAAAGTCAGCACTGGCTATGcaaatttttttaaatgataaatgACGCTGCACAGCAGCAGGGATTGATTTGGTGTAAATGAAACTAATTAAGGAAATGTCAAACATAATTAATAAAACAGGTTTAAGCTGCAAAACATTGTCAATTGAATGAATGAGGAGGCATTGGCTCCCATTGTTCCGGCTTTATTTAGGGCTTGTGTTTAGCTTGTTCTCTGCTCCAGAATGCACTCTCCCCACCTCACACCCTCCACCACCAATTCCCTGAGAGGGGGAAAATAAATGTGCTTGTCTCTCCGCTGACTGTAGAAATTAATTGCTGAAATCTTGTCCCATCCAAGTGTTACATTCACTCGCAGGACATTAACATAACTAATTTGAAAGAGCCCAAATGACTGCATAATGGAGCTCCGTCAGCACGCATGACAGTCGCTGGTCATACCAAATTAGCTCGGTTTTATAATTGAAATTTTTCCCCTGTTCCAATTTTTATACAATTTTCCCCCACCCattttttccctccctcctccatgctATCTTTCCTCTTCTTCTCGATAAGAACAAAGGTTTTATAATTTACAAAAAGAGTGCTTGACCTATAATTAGAGGGAAGAGTGTAGGGGAGGGGCTGCTGGAGGAGTCCCATCCTTAGTCCTGGTAATGATGCTGGAGACCTTGTAGCCTCCTGGGAGCCCTGAGAATAATGGGATGGGCTATTTTTATGGAGGACCAGAGCAGTGTGCCCCCGCTGGGGCGCTGAAGCCCTGGTGTGGTGTGGCGCAGCGGGGGCTAGCGGGGGCCAGCTCTCAGCCTGCCAGCCACAACCCTGCCCATCAGTTCCACCCATCAGCCCAGCCTGCCCCGTCAGCCCTGTGCCCCATGCCATCCGCTGCTCCTGCCCTTGCCgcggagagaggggatgggggaaCATCTGCCGCTCTCCCTCCCCGCACAGAGAACTCActgagagagaagtagaggggaGTCTTACTTTCACATGCACAGTCACAGGCGTGTACAGACACTCAATAATATTGTGTTCATTCTCACTCGTGTGTTCTTTTTTTCATTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1114991 lncRNA upstream 36327 41633237 ~ 41633469 (+) True G979235
TU1114959 lncRNA upstream 92734 41570821 ~ 41577062 (+) True G979204
TU1114955 lncRNA upstream 104603 41564785 ~ 41565193 (+) True G979200
TU1114953 lncRNA upstream 107789 41561596 ~ 41562007 (+) True G979198
TU1114951 lncRNA upstream 122913 41546616 ~ 41546883 (+) True G979196
TU1115039 lncRNA downstream 17498 41716748 ~ 41751955 (+) True G979282
TU1115224 lncRNA downstream 110272 41809522 ~ 41809776 (+) True G979460
TU1115308 lncRNA downstream 230429 41929679 ~ 41933856 (+) True G979541
TU1115312 lncRNA downstream 241416 41940666 ~ 41969077 (+) True G979544
TU1115398 lncRNA downstream 315277 42014527 ~ 42014753 (+) True G979620
XR_005034631.1 mRNA upstream 37755 41626277 ~ 41632041 (+) True LOC118937352
XM_021620898.2 mRNA upstream 65081 41595536 ~ 41604715 (+) False LOC110535708
XM_036935486.1 mRNA upstream 65081 41599317 ~ 41604715 (+) False LOC110535708
XM_036935485.1 mRNA upstream 65081 41602200 ~ 41604715 (+) True LOC110535708
XR_005034630.1 mRNA upstream 83972 41581727 ~ 41585824 (+) True LOC118936418
XR_005034632.1 mRNA downstream 15880 41715130 ~ 41760853 (+) True LOC118937354
XM_036935489.1 mRNA downstream 446750 42146000 ~ 42156152 (+) False LOC110535709
XM_021620900.2 mRNA downstream 450244 42149494 ~ 42156152 (+) False LOC110535709
XM_021620899.2 mRNA downstream 450248 42149498 ~ 42157026 (+) True LOC110535709
XM_021620908.2 mRNA downstream 892758 42592008 ~ 42629083 (+) False slf1
TU1114082 other upstream 653708 41003076 ~ 41016088 (+) True G978396
TU1113929 other upstream 901567 40767836 ~ 40768229 (+) True G978255
TU1111560 other upstream 2611785 39057676 ~ 39058011 (+) True G976017
TU1109485 other upstream 3606696 38057798 ~ 38063100 (+) True G974184
TU1109353 other upstream 3626466 38042706 ~ 38043330 (+) False LOC110535015
TU1115468 other downstream 379242 42078492 ~ 42078855 (+) True G979689
TU1115777 other downstream 829270 42528520 ~ 42533308 (+) True G979965
TU1115850 other downstream 932574 42631824 ~ 42636709 (+) False G980019
TU1117647 other downstream 1961124 43660374 ~ 43715297 (+) True G981690
TU1118214 other downstream 2581675 44280925 ~ 44285969 (+) True G982236

Expression Profile