Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00003848 |
| length | 1659 |
| RNA type | mRNA |
| GC content | 0.46 |
| exon number | 3 |
| gene id | XLOC_001968 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_007121.7 |
| NCBI id | CM002894.2 |
| chromosome length | 45420867 |
| location | 13000370 ~ 13064110 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0007186 | G protein-coupled receptor signaling pathway | biological_process |
| GO:0007189 | adenylate cyclase-activating G protein-coupled receptor signaling pathway | biological_process |
| GO:0019222 | regulation of metabolic process | biological_process |
| GO:0051482 | positive regulation of cytosolic calcium ion concentration involved in phospholipase C-activating G protein-coupled signaling pathway | biological_process |
| GO:0051216 | cartilage development | biological_process |
| GO:0001525 | angiogenesis | biological_process |
| GO:0060215 | primitive hemopoiesis | biological_process |
| GO:0060217 | hemangioblast cell differentiation | biological_process |
| GO:0016310 | phosphorylation | biological_process |
| GO:0022008 | neurogenesis | biological_process |
| GO:0001946 | lymphangiogenesis | biological_process |
| GO:0007165 | signal transduction | biological_process |
| GO:0005886 | plasma membrane | cellular_component |
| GO:0016020 | membrane | cellular_component |
| GO:0016021 | integral component of membrane | cellular_component |
| GO:0005737 | cytoplasm | cellular_component |
| GO:0016740 | transferase activity | molecular_function |
| GO:0004930 | G protein-coupled receptor activity | molecular_function |
| GO:0070915 | lysophosphatidic acid receptor activity | molecular_function |
| GO:0016301 | kinase activity | molecular_function |
| id | description |
|---|---|
| ko04015 | Rap1 signaling pathway |
| ko04072 | Phospholipase D signaling pathway |
| ko04151 | PI3K-Akt signaling pathway |
| ko04080 | Neuroactive ligand-receptor interaction |
| ko04540 | Gap junction |
| ko04810 | Regulation of actin cytoskeleton |
| ko05200 | Pathways in cancer |
| ko05130 | Pathogenic Escherichia coli infection |
| ko04030 | G protein-coupled receptors |
| id | description |
|---|---|
| ZDB-GENE-030616-499 | Enables lysophosphatidic acid receptor activity. Acts upstream of or within cartilage development; hemangioblast cell differentiation; and vasculature development. Predicted to be located in cell surface; endosome; and membrane. Predicted to be integral component of membrane. Predicted to be active in cytoplasm and plasma membrane. Is expressed in several structures, including cardiovascular system; mesoderm; musculature system; nervous system; and pleuroperitoneal region. Orthologous to human LPAR1 (lysophosphatidic acid receptor 1). |
| ensembl_id | ENSDART00000172625 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00005692 | lncRNA | upstream | 1071572 | 11928089 ~ 11929132 (+) | False | XLOC_001965 |
| TCONS_00005691 | lncRNA | upstream | 1071572 | 11928089 ~ 11929132 (+) | True | XLOC_001965 |
| TCONS_00005690 | lncRNA | upstream | 1072718 | 11926073 ~ 11927986 (+) | False | XLOC_001964 |
| TCONS_00005689 | lncRNA | upstream | 1072718 | 11926073 ~ 11927986 (+) | True | XLOC_001964 |
| TCONS_00005836 | lncRNA | upstream | 1334741 | 11652749 ~ 11665963 (+) | True | XLOC_001961 |
| TCONS_00005837 | lncRNA | downstream | 234614 | 13298724 ~ 13304277 (+) | False | XLOC_001971 |
| TCONS_00005838 | lncRNA | downstream | 234616 | 13298726 ~ 13304277 (+) | True | XLOC_001971 |
| TCONS_00005839 | lncRNA | downstream | 1960671 | 15024781 ~ 15031440 (+) | False | XLOC_001979 |
| TCONS_00005840 | lncRNA | downstream | 1960882 | 15024992 ~ 15031440 (+) | False | XLOC_001979 |
| TCONS_00005841 | lncRNA | downstream | 1960919 | 15025029 ~ 15031440 (+) | True | XLOC_001979 |
| TCONS_00003845 | mRNA | upstream | 270253 | 12517059 ~ 12730451 (+) | True | XLOC_001967 |
| TCONS_00003842 | mRNA | upstream | 1212139 | 11767791 ~ 11788565 (+) | True | XLOC_001962 |
| TCONS_00003840 | mRNA | upstream | 1499280 | 11398111 ~ 11501424 (+) | True | XLOC_001958 |
| TCONS_00003838 | mRNA | upstream | 1628163 | 11355841 ~ 11372541 (+) | False | XLOC_001957 |
| TCONS_00003849 | mRNA | downstream | 145470 | 13209580 ~ 13236012 (+) | False | XLOC_001969 |
| TCONS_00003850 | mRNA | downstream | 145580 | 13209690 ~ 13222865 (+) | True | XLOC_001969 |
| TCONS_00003851 | mRNA | downstream | 214969 | 13279079 ~ 13287169 (+) | False | XLOC_001970 |
| TCONS_00003852 | mRNA | downstream | 219458 | 13283568 ~ 13286568 (+) | True | XLOC_001970 |
| TCONS_00003855 | mRNA | downstream | 1146557 | 14210667 ~ 14212801 (+) | True | XLOC_001974 |
| TCONS_00003844 | other | upstream | 667335 | 12333253 ~ 12333369 (+) | True | XLOC_001966 |
| TCONS_00003843 | other | upstream | 1226185 | 11774405 ~ 11774519 (+) | True | XLOC_001963 |
| TCONS_00003841 | other | upstream | 1501895 | 11498693 ~ 11498809 (+) | True | XLOC_001959 |
| TCONS_00003830 | other | upstream | 1884734 | 11115854 ~ 11115970 (+) | True | XLOC_001954 |
| TCONS_00003827 | other | upstream | 2013402 | 10972810 ~ 10987302 (+) | False | XLOC_001952 |
| TCONS_00003853 | other | downstream | 792682 | 13856792 ~ 13894856 (+) | True | XLOC_001972 |
| TCONS_00003854 | other | downstream | 866738 | 13930848 ~ 13931718 (+) | True | XLOC_001973 |
| TCONS_00003873 | other | downstream | 2191072 | 15255182 ~ 15287900 (+) | False | XLOC_001989 |
| TCONS_00003878 | other | downstream | 2234680 | 15298790 ~ 15304367 (+) | True | XLOC_001989 |
| TCONS_00003893 | other | downstream | 2538974 | 15603084 ~ 15605143 (+) | False | XLOC_001994 |
