RNA id: XM_021620907.2


Basic Information

Item Value
RNA id XM_021620907.2
length 3332
RNA type mRNA
GC content 0.56
exon number 18
gene id slf1
representative False

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 42592008 ~ 42629731 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ccccccctcccactagCGCAGTTTACTGTCAAGATAGAGTATTTTCTTCTTAGCACAAGGGTGGAAAACACCTATATTTTGCTCAGTGATAGTCCAATATGTAGCTAGTTTATTAACCAGTATGCACGATTTAATTGTAGTTTCGATAAATATAGCAACATGTTGTTGAACGAATCAAATGTCAGTCTAGAGAAATAAAATATTGACGGCTCGCGAAATGGTATCGACTGTCAAGTCTGGTCATGGCGTCTGAATTTTGGCGCTAGCTAGATAGCGTTAGAGTGGACGTCACATGCACATGCCAAGGATGGTGGACACCAAGCATGTGTTCCAAGTGTCTGGGATCAAGAATCTCCAGAAGAAGGGAAAGTTGCTCCATGGAATCGTTCAACTGGGTGGAAAGTACATTGGTGGCTCTGTTTATAAAGACGGAACTACCCATCTGATTGTCACCCGTGAGCTGCCGAGTGAGAAGTTCATGGCAGCCTGTGCAGGAGgCAAATGGATCGTGACTCCAGAATATATTTTTGACTCTGTTAAGAATGGTTCGTGGCTGCCAGAGGGGCCCTATGAGTTGGACATTGTCTCCAAGGGGGGAGTCCCTGGGACCTCTAACCCAGTAAAggtgtggagggagagggtgacCAGCAGGGCCATGGCTGGGGCCTTCGAGGGTTGGAGGGTCCTCCTGATGGTCAATGAGCCTACTCGCAGAGACATGCTCAGAAGaATCCTAAAAGCTGGGAAGGCCAATGTGTACTcgtaccctcctccctcccatgcTGACGTGACACACGTGTTGACAAAACACGTCACAGAGCATGTGAAGGCCCACAATGCACCGTGCTACTCCATAGAACACATGGCCCTGCATCTTTTTGGGGAGAACGTGTGTTCTGATATGGGTTTAACCTGGACAGAGGGCCAGCCAGAGGAGACACAGGAGGCCAATGATGCACTCTCCACAGACTTTTCAGAGCTGGAGAGCGAGGCCAGGGACTACATCTCTCAAATAGGGGAGCGGAAAAGACTCCCAGATATCCAGAGCTACTATGCCCCCGGACCGTACGCTCAGACTGCTGTAGCCAACTTCAGCAACGTGCAGAGCCTCACTGAGTGTGGTTTATTCACCCAAGCCCTAGAGGAGCTCCAGTTGTACCTGCTGCCAGGGCAGCTCCCCCCAGCTCCATTCCTCCAGCCCCTCATGCGTCACGCTCTCCACGGGGATGCCAAGCCTTTCTTTCTCAGCGAGTTCCGCACGGTTCTCCACAGCATCCTGAGGAACAACCCTCCCTGGGGTTCTCCAGCTAGCGGGACATTCTTCATGAAGGTGCTACAGTGTCCCCAGTGTCGAAAAGGAGTCTGGCCCCTTTTGGAGACATCACTCAGGTTCTGCATGGGTAGCAAGCCCTGTCACTCACTCCCTAGCCCCGCCTCCCCAGAGCTGCTCCGCTTCCATGGTGACCTGCAGGCCTTTATGCTCGAGCTCTTCAAGTGTGACATGTACTCAGCTAGCAAAGGAGAGGCGGGAGGCTTGCGGTCGTCCGTCCTCTACAGGGTGTTCTGGAGCTTGTGGGAGCGCTCGACGCTGGCCTCCAAGGCCGTGCAGCAGATCGCCCAGCTCCTGGTCCAGGCCTCATTGTGGGAACGCTCTGTCTCGGAGGGTCAGGAGAGGGACTGTGAGAGAGACCGGAGGCAGACGCTGGTACTGACCCTGCAGGACACGCTGGGTGTGGTGGTGGACTACTGGTGGCAGGAGTACAGCCGCCTCAACCGCAGCCTGGTGGACAAAGGCCTGGAGGACCTGGCTCAACACATCGCCATCCTCTGTCAGGACCTGCCCCCGGATGTCCTCCAGACGTTTGTTCCCGGGATGGTCCCAACCAGGCTACGGATGGTCACGGCAGACGCCATCTTTAGGAACGTGTGCTGCAGGAACGGCATCATCATAGGAGCAGAGCCCATCTCGCTAAGGAAGATTGTGTCCTCCTACCTGCCAGCCCTGGGGAGGCTGTGCGCGGTCAGGACAGGTGGCTCCAGAGTCTCCCGGGCAGACAGCGGGGGCCCTCGGCCTGGGACTGAACCCACCTCCTGCAGCTGGAGCACCCAGGGGACTGATACAGGAATGGCCAGCAGTCTGGTTAACGGAGCAGGTCTGGGCAAGGAGAACATCCCCAGAGGTCTCAACCGTGTGAACAcagcagGCGAGACACTCCTCCACAGAGCCTGCAAGAGGAACCAGGTTGAGACGCTGCTTCAGATCCTAGCACTTCCTGGGACCGACGTCAACGTGAAAGACCACGCAGGCTGGACGCCCCTGCACGAGGCGTGTAACCATGGCAGCCGTGCGTGTGTGGAGGCCCTGCTGCGCCACCGGCCCACCCCTCACCTGTACAGCCAGGTTGGTGGAGTCAGCCCCCTACATGATTCGCTGCTCAGTGGACACACGGACATCGCCATGATGCTCCTGCAGCATGCAGGCTCTGAGCTGCTGCAGCAGAGGGATGGCCGTGGCCGGACAGCGCTGGACCTGGCCTCCACCGTCACGCTGAGGGAGGAGCTTCAACGCAGCGCCCTTGCCGGAGACGCGGTCCTGGAGGCcctggggtcagaggtcagagacctaCCCTTCCTGGAGGCCTGCTCCTGCCTGCTGACTTGCCTGCTTCTCACCTACCAGATAGAGAGGgctgtccccttccctccctccttctcatccTCCCAGGCCCAGGACAGGCCACTCTCCCTGGGGGTGAAGCTGGCCAGAGCCCTGGAGAGCCACTCTGCCCGGAGGCTGACGGCGGGCTGGGGTGACCCACGGCTGGTGCGCCTGGCTGAGGACATGGAGACCGCGTTGGGGGTGGAGGAATGCCTGGCTCAGTTGTGCCCCGCTATCAGGGATTGCCAGGGCCCACACACACGCCTCCTCATCACCCTGCTGGAGGAGATGAAGGCCCACAGAGCAGCGctgccctctcacacacacactgtgacacacacacctgactgatAATGGACATTGACTGCGGCCGTTATTCAATCCAAAGCACGTTATAGAGCAGAGCACTATAACAGACTTTTAAAGGTGTTTTATGCTTTAGCCAACATGGACAACGTTTCCTGTGAATGTGATCTCCACTGTCTAGGTTCCTGCTCTATACCGCACCTTTTGAGTGAATTGTGACGTGCATAAATGATTGTTGTTTACATTTGAATTCACGTTAATCATGTGACACACTACCACTGTTAGTCTTTTTTTTCAATTGTTCATATACATTTTCATGTTAACACTGTTTTTATAGATtttgaataaatatattttgtattgagAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1115799 lncRNA upstream 22655 42569102 ~ 42569354 (+) True G979987
TU1115797 lncRNA upstream 25547 42566245 ~ 42566462 (+) True G979985
TU1115796 lncRNA upstream 25767 42565817 ~ 42566242 (+) True G979984
TU1115486 lncRNA upstream 467594 42123583 ~ 42124415 (+) True G979707
TU1115485 lncRNA upstream 469317 42122493 ~ 42122692 (+) True G979706
TU1115839 lncRNA downstream 4425 42634156 ~ 42636709 (+) False G980019
TU1115842 lncRNA downstream 4425 42634156 ~ 42636709 (+) True G980019
TU1115906 lncRNA downstream 73837 42703568 ~ 42703849 (+) True G980072
TU1116015 lncRNA downstream 236404 42866135 ~ 42866460 (+) True G980171
TU1116019 lncRNA downstream 241066 42870797 ~ 42871073 (+) True G980175
XM_021620899.2 mRNA upstream 434983 42149498 ~ 42157026 (+) True LOC110535709
XM_036935489.1 mRNA upstream 435857 42146000 ~ 42156152 (+) False LOC110535709
XM_021620900.2 mRNA upstream 435857 42149494 ~ 42156152 (+) False LOC110535709
XR_005034632.1 mRNA upstream 831156 41715130 ~ 41760853 (+) True LOC118937354
XR_005034795.1 mRNA upstream 892759 41669796 ~ 41699250 (+) True LOC118937445
XM_021620910.2 mRNA downstream 209817 42839548 ~ 42861443 (+) True fam81b
XM_036936306.1 mRNA downstream 527901 43157632 ~ 43208004 (+) True LOC110535025
XM_021620919.2 mRNA downstream 1400807 44030538 ~ 44032621 (+) False LOC110535720
XM_021620920.2 mRNA downstream 1489750 44119481 ~ 44178070 (+) False LOC110535722
XM_021620921.2 mRNA downstream 1489750 44119481 ~ 44178070 (+) False LOC110535722
TU1115777 other upstream 58701 42528520 ~ 42533308 (+) True G979965
TU1115468 other upstream 513154 42078492 ~ 42078855 (+) True G979689
TU1114082 other upstream 1575921 41003076 ~ 41016088 (+) True G978396
TU1113929 other upstream 1823780 40767836 ~ 40768229 (+) True G978255
TU1111560 other upstream 3533998 39057676 ~ 39058011 (+) True G976017
TU1115850 other downstream 2093 42631824 ~ 42636709 (+) False G980019
TU1117647 other downstream 1030643 43660374 ~ 43715297 (+) True G981690
TU1118214 other downstream 1651194 44280925 ~ 44285969 (+) True G982236
TU1119620 other downstream 2753676 45383407 ~ 45413082 (+) True LOC110535735
TU1120571 other downstream 3478189 46107920 ~ 46109940 (+) True G984422

Expression Profile